Wall clock time and date at job start Tue Mar 31 2020 07:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35901 * 117.00477 * 2 1 4 4 C 1.38753 * 120.05461 * 0.02928 * 3 2 1 5 5 C 1.38121 * 119.94593 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05321 * 359.73673 * 5 4 3 7 7 C 1.38249 * 120.11206 * 0.51591 * 6 5 4 8 8 C 1.50702 * 119.97412 * 179.76430 * 7 6 5 9 9 H 1.08993 * 109.47270 * 204.72266 * 8 7 6 10 10 O 1.42904 * 109.46978 * 324.72541 * 8 7 6 11 11 C 1.42901 * 113.99518 * 270.00069 * 10 8 7 12 12 C 1.50704 * 109.46949 * 84.71873 * 8 7 6 13 13 O 1.20825 * 120.00077 * 245.00045 * 12 8 7 14 14 O 1.34225 * 119.99598 * 65.00270 * 12 8 7 15 15 C 1.45206 * 117.00211 * 179.97438 * 14 12 8 16 16 H 1.09002 * 109.46590 * 30.00194 * 15 14 12 17 17 C 1.52997 * 109.47226 * 270.00418 * 15 14 12 18 18 C 1.50697 * 109.47178 * 149.99899 * 15 14 12 19 19 H 1.07999 * 120.00055 * 0.02562 * 18 15 14 20 20 C 1.37878 * 119.99687 * 180.02562 * 18 15 14 21 21 N 1.31511 * 120.00458 * 359.97438 * 20 18 15 22 22 Si 1.86805 * 119.99926 * 180.02562 * 20 18 15 23 23 H 1.48506 * 109.46872 * 59.99743 * 22 20 18 24 24 H 1.48503 * 109.47008 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.46914 * 299.99916 * 22 20 18 26 26 C 1.38161 * 120.05421 * 359.48661 * 7 6 5 27 27 H 1.08993 * 109.47594 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47033 * 299.99773 * 1 2 3 29 29 H 1.09000 * 109.47322 * 59.99063 * 1 2 3 30 30 H 1.08003 * 120.02491 * 359.97438 * 4 3 2 31 31 H 1.07993 * 119.97291 * 180.02562 * 5 4 3 32 32 H 1.07996 * 119.94402 * 180.27640 * 6 5 4 33 33 H 1.08999 * 109.47491 * 59.99896 * 11 10 8 34 34 H 1.09005 * 109.46838 * 180.02562 * 11 10 8 35 35 H 1.09000 * 109.46749 * 299.99646 * 11 10 8 36 36 H 1.09002 * 109.47153 * 299.99431 * 17 15 14 37 37 H 1.09001 * 109.46832 * 179.97438 * 17 15 14 38 38 H 1.09004 * 109.47261 * 59.99603 * 17 15 14 39 39 H 0.96999 * 120.00480 * 179.97438 * 21 20 18 40 40 H 1.08003 * 120.02808 * 180.28039 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2916 2.3753 0.0006 5 6 1.9210 3.6047 0.0011 6 6 3.3021 3.6756 0.0066 7 6 4.0561 2.5169 0.0007 8 6 5.5610 2.5978 0.0013 9 1 5.9740 1.6875 -0.4331 10 8 5.9776 3.7258 -0.7710 11 6 6.1876 3.4371 -2.1547 12 6 6.0554 2.7482 1.4169 13 8 6.6199 3.7614 1.7553 14 8 5.8686 1.7564 2.3018 15 6 6.3714 1.9698 3.6473 16 1 6.3424 3.0340 3.8813 17 6 7.8133 1.4666 3.7387 18 6 5.5128 1.2159 4.6299 19 1 4.6736 0.6342 4.2784 20 6 5.7989 1.2689 5.9776 21 7 6.8212 1.9769 6.4056 22 14 4.7351 0.3338 7.1956 23 1 4.7755 -1.1161 6.8769 24 1 5.2493 0.5523 8.5716 25 1 3.3353 0.8214 7.1065 26 6 3.4312 1.2847 0.0001 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 0.2129 2.3204 0.0007 31 1 1.3342 4.5113 0.0020 32 1 3.7924 4.6378 0.0115 33 1 5.2598 3.0712 -2.5945 34 1 6.5022 4.3439 -2.6713 35 1 6.9615 2.6760 -2.2536 36 1 7.8422 0.4024 3.5047 37 1 8.1908 1.6273 4.7485 38 1 8.4343 2.0119 3.0279 39 1 7.0222 2.0145 7.3538 40 1 4.0207 0.3797 0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850842878.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:42 Heat of formation + Delta-G solvation = -138.707795 kcal Electronic energy + Delta-G solvation = -23993.514081 eV Core-core repulsion = 20353.480064 eV Total energy + Delta-G solvation = -3640.034017 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.38381 -39.54005 -38.09331 -36.89260 -35.52174 -33.26359 -31.98768 -30.39354 -29.56507 -27.89107 -27.28144 -25.81233 -25.27003 -22.64032 -22.21379 -21.08808 -19.66970 -18.14506 -17.12783 -16.91040 -16.34230 -16.05094 -15.79738 -15.68888 -15.58088 -15.35753 -14.61279 -14.54283 -13.88245 -13.79611 -13.42292 -12.95745 -12.83138 -12.51450 -12.22104 -12.00880 -11.82385 -11.62222 -11.26108 -11.20223 -11.11642 -11.02218 -10.89648 -10.82021 -10.37284 -10.25659 -10.04096 -9.57133 -9.50811 -8.89651 -8.76606 -8.45950 -8.13672 -6.15417 -4.21984 1.26145 1.53176 2.88638 3.05327 3.28512 3.28967 3.31887 3.36800 3.74704 4.27176 4.46159 4.62360 4.78338 4.96844 5.03258 5.07215 5.09649 5.17483 5.32400 5.34194 5.35135 5.44984 5.54033 5.59970 5.63303 5.67232 6.00788 6.30954 6.47379 6.56940 6.65307 6.73741 6.89839 6.92571 7.04330 7.17435 7.40571 7.62340 7.74730 7.95758 8.16244 8.65441 8.90675 9.42966 10.92074 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.011787 B = 0.005641 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.986482 B = 4962.775646 C = 6727.523952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.123 3.877 4 C -0.201 4.201 5 C -0.086 4.086 6 C -0.124 4.124 7 C -0.072 4.072 8 C 0.140 3.860 9 H 0.103 0.897 10 O -0.353 6.353 11 C 0.028 3.972 12 C 0.459 3.541 13 O -0.497 6.497 14 O -0.349 6.349 15 C 0.217 3.783 16 H 0.047 0.953 17 C -0.155 4.155 18 C -0.519 4.519 19 H 0.069 0.931 20 C 0.063 3.937 21 N -0.890 5.890 22 Si 0.911 3.089 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.121 4.121 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.045 0.955 34 H 0.091 0.909 35 H 0.045 0.955 36 H 0.037 0.963 37 H 0.100 0.900 38 H 0.016 0.984 39 H 0.267 0.733 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.631 -0.991 -16.550 19.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.078 3.922 4 C -0.220 4.220 5 C -0.104 4.104 6 C -0.142 4.142 7 C -0.073 4.073 8 C 0.080 3.920 9 H 0.121 0.879 10 O -0.271 6.271 11 C -0.068 4.068 12 C 0.299 3.701 13 O -0.385 6.385 14 O -0.265 6.265 15 C 0.165 3.835 16 H 0.065 0.935 17 C -0.213 4.213 18 C -0.557 4.557 19 H 0.087 0.913 20 C -0.139 4.139 21 N -0.527 5.527 22 Si 0.738 3.262 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.200 1.200 26 C -0.140 4.140 27 H 0.116 0.884 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.118 0.882 38 H 0.035 0.965 39 H 0.076 0.924 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.239 -0.664 -16.129 18.599 hybrid contribution -0.718 -0.463 0.660 1.079 sum -9.957 -1.127 -15.469 18.431 Atomic orbital electron populations 1.23029 0.78637 1.03796 1.01215 1.86078 1.21155 1.26858 1.88864 1.18853 0.92060 0.84160 0.97110 1.21243 0.99868 0.92478 1.08429 1.20886 0.94349 0.96987 0.98146 1.20941 0.93520 0.98543 1.01173 1.19671 0.94017 0.93246 1.00350 1.20201 0.90795 0.91372 0.89603 0.87917 1.88024 1.87838 1.31539 1.19661 1.22908 0.99974 1.02238 0.81686 1.22658 0.77182 0.82647 0.87605 1.90619 1.38971 1.29891 1.79012 1.86476 1.73077 1.42288 1.24699 1.20670 0.91855 0.98626 0.72353 0.93531 1.22176 0.96959 0.98818 1.03364 1.20975 1.13622 1.30832 0.90255 0.91320 1.24871 0.95586 0.95506 0.97947 1.69887 1.27414 1.39963 1.15483 0.86340 0.80309 0.80128 0.79404 1.19912 1.21020 1.20015 1.20200 0.91570 0.97953 1.04264 0.88355 0.92590 0.92895 0.85570 0.85633 0.85090 0.93617 0.89024 0.93613 0.94353 0.88151 0.96476 0.92355 0.84608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.26 10.50 -19.43 -0.20 -4.47 16 3 C 0.12 1.78 6.69 -39.22 -0.26 1.52 16 4 C -0.20 -2.57 9.04 -39.43 -0.36 -2.92 16 5 C -0.09 -1.11 10.04 -39.61 -0.40 -1.51 16 6 C -0.12 -1.87 9.35 -39.56 -0.37 -2.24 16 7 C -0.07 -1.16 4.93 -104.65 -0.52 -1.67 16 8 C 0.14 2.35 2.84 -29.03 -0.08 2.27 16 9 H 0.10 1.44 7.69 -51.93 -0.40 1.04 16 10 O -0.35 -5.62 9.04 -55.14 -0.50 -6.12 16 11 C 0.03 0.31 10.81 101.05 1.09 1.40 16 12 C 0.46 10.22 7.25 36.01 0.26 10.48 16 13 O -0.50 -12.58 15.73 -25.46 -0.40 -12.98 16 14 O -0.35 -8.57 9.85 -39.25 -0.39 -8.96 16 15 C 0.22 5.99 2.56 -27.89 -0.07 5.92 16 16 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 17 C -0.16 -4.02 9.33 37.16 0.35 -3.67 16 18 C -0.52 -14.87 8.90 -34.44 -0.31 -15.18 16 19 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 20 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 21 N -0.89 -25.62 11.32 55.43 0.63 -25.00 16 22 Si 0.91 21.45 29.54 -169.99 -5.02 16.42 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 26 C -0.12 -1.87 9.62 -39.43 -0.38 -2.25 16 27 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 29 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 30 H 0.13 1.25 6.30 -52.48 -0.33 0.92 16 31 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 32 H 0.13 1.99 7.63 -52.49 -0.40 1.59 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.43 8.08 -51.93 -0.42 0.01 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.10 2.76 6.07 -51.93 -0.32 2.44 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.14 1.98 8.06 -52.48 -0.42 1.55 16 LS Contribution 344.95 15.07 5.20 5.20 Total: -1.00 -33.47 344.95 -6.37 -39.84 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.54 Total: 1.03 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -0.14 Total: -4.96 kcal Atomic # 7 Polarization: -25.62 SS G_CDS: 0.63 Total: -25.00 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -1.49 Total: -32.53 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.47 -6.37 -39.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850842878.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.868 kcal (2) G-P(sol) polarization free energy of solvation -33.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds