Wall clock time and date at job start Tue Mar 31 2020 07:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35901 * 117.00477 * 2 1 4 4 C 1.38753 * 120.05461 * 0.02928 * 3 2 1 5 5 C 1.38121 * 119.94593 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05321 * 359.73673 * 5 4 3 7 7 C 1.38249 * 120.11206 * 0.51591 * 6 5 4 8 8 C 1.50702 * 119.97412 * 179.76430 * 7 6 5 9 9 H 1.08993 * 109.47270 * 204.72266 * 8 7 6 10 10 O 1.42904 * 109.46978 * 324.72541 * 8 7 6 11 11 C 1.42901 * 113.99518 * 270.00069 * 10 8 7 12 12 C 1.50704 * 109.46949 * 84.71873 * 8 7 6 13 13 O 1.20825 * 120.00077 * 245.00045 * 12 8 7 14 14 O 1.34225 * 119.99598 * 65.00270 * 12 8 7 15 15 C 1.45206 * 117.00211 * 179.97438 * 14 12 8 16 16 H 1.09002 * 109.46590 * 30.00194 * 15 14 12 17 17 C 1.52997 * 109.47226 * 270.00418 * 15 14 12 18 18 C 1.50697 * 109.47178 * 149.99899 * 15 14 12 19 19 H 1.07999 * 120.00055 * 0.02562 * 18 15 14 20 20 C 1.37878 * 119.99687 * 180.02562 * 18 15 14 21 21 N 1.31511 * 120.00458 * 359.97438 * 20 18 15 22 22 Si 1.86805 * 119.99926 * 180.02562 * 20 18 15 23 23 H 1.48506 * 109.46872 * 59.99743 * 22 20 18 24 24 H 1.48503 * 109.47008 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.46914 * 299.99916 * 22 20 18 26 26 C 1.38161 * 120.05421 * 359.48661 * 7 6 5 27 27 H 1.08993 * 109.47594 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47033 * 299.99773 * 1 2 3 29 29 H 1.09000 * 109.47322 * 59.99063 * 1 2 3 30 30 H 1.08003 * 120.02491 * 359.97438 * 4 3 2 31 31 H 1.07993 * 119.97291 * 180.02562 * 5 4 3 32 32 H 1.07996 * 119.94402 * 180.27640 * 6 5 4 33 33 H 1.08999 * 109.47491 * 59.99896 * 11 10 8 34 34 H 1.09005 * 109.46838 * 180.02562 * 11 10 8 35 35 H 1.09000 * 109.46749 * 299.99646 * 11 10 8 36 36 H 1.09002 * 109.47153 * 299.99431 * 17 15 14 37 37 H 1.09001 * 109.46832 * 179.97438 * 17 15 14 38 38 H 1.09004 * 109.47261 * 59.99603 * 17 15 14 39 39 H 0.96999 * 120.00480 * 179.97438 * 21 20 18 40 40 H 1.08003 * 120.02808 * 180.28039 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2916 2.3753 0.0006 5 6 1.9210 3.6047 0.0011 6 6 3.3021 3.6756 0.0066 7 6 4.0561 2.5169 0.0007 8 6 5.5610 2.5978 0.0013 9 1 5.9740 1.6875 -0.4331 10 8 5.9776 3.7258 -0.7710 11 6 6.1876 3.4371 -2.1547 12 6 6.0554 2.7482 1.4169 13 8 6.6199 3.7614 1.7553 14 8 5.8686 1.7564 2.3018 15 6 6.3714 1.9698 3.6473 16 1 6.3424 3.0340 3.8813 17 6 7.8133 1.4666 3.7387 18 6 5.5128 1.2159 4.6299 19 1 4.6736 0.6342 4.2784 20 6 5.7989 1.2689 5.9776 21 7 6.8212 1.9769 6.4056 22 14 4.7351 0.3338 7.1956 23 1 4.7755 -1.1161 6.8769 24 1 5.2493 0.5523 8.5716 25 1 3.3353 0.8214 7.1065 26 6 3.4312 1.2847 0.0001 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 0.2129 2.3204 0.0007 31 1 1.3342 4.5113 0.0020 32 1 3.7924 4.6378 0.0115 33 1 5.2598 3.0712 -2.5945 34 1 6.5022 4.3439 -2.6713 35 1 6.9615 2.6760 -2.2536 36 1 7.8422 0.4024 3.5047 37 1 8.1908 1.6273 4.7485 38 1 8.4343 2.0119 3.0279 39 1 7.0222 2.0145 7.3538 40 1 4.0207 0.3797 0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850842878.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:41 Heat of formation + Delta-G solvation = -158.896761 kcal Electronic energy + Delta-G solvation = -23994.389540 eV Core-core repulsion = 20353.480064 eV Total energy + Delta-G solvation = -3640.909476 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.76218 -40.92088 -39.39346 -38.00199 -37.40923 -35.36715 -33.19001 -31.71382 -31.33474 -29.05603 -28.08240 -27.47963 -26.87105 -24.06494 -23.54485 -22.52951 -21.41511 -19.34762 -18.92513 -18.45512 -17.79987 -17.56669 -17.10119 -16.88428 -16.62679 -16.59373 -16.35439 -16.11448 -15.26347 -14.83339 -14.63328 -14.40086 -14.20588 -14.02909 -13.71161 -13.44799 -13.23022 -13.00025 -12.85239 -12.82137 -12.72868 -12.41123 -12.33932 -12.17931 -12.04691 -11.86059 -11.63175 -11.48534 -11.03696 -10.88573 -10.60804 -9.92713 -9.19962 -8.29335 -6.46372 0.14355 0.44117 1.19820 1.39288 1.44614 1.50027 1.59308 2.33472 2.38989 2.63945 3.00672 3.10688 3.45464 3.75000 3.83260 3.91200 4.11858 4.31707 4.33015 4.43284 4.48800 4.50485 4.53291 4.53721 4.60078 4.75847 4.76142 4.79888 4.82725 4.95902 5.10894 5.25322 5.39433 5.46230 5.48200 5.59698 5.70124 5.87013 5.94814 6.03336 6.44746 6.57724 6.89198 7.24640 8.78369 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.011787 B = 0.005641 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.986482 B = 4962.775646 C = 6727.523952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.116 3.884 4 C -0.196 4.196 5 C -0.082 4.082 6 C -0.142 4.142 7 C -0.086 4.086 8 C 0.154 3.846 9 H 0.131 0.869 10 O -0.377 6.377 11 C 0.021 3.979 12 C 0.452 3.548 13 O -0.535 6.535 14 O -0.352 6.352 15 C 0.219 3.781 16 H 0.005 0.995 17 C -0.143 4.143 18 C -0.547 4.547 19 H 0.066 0.934 20 C 0.018 3.982 21 N -0.916 5.916 22 Si 0.982 3.018 23 H -0.262 1.262 24 H -0.275 1.275 25 H -0.270 1.270 26 C -0.139 4.139 27 H 0.118 0.882 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.159 0.841 31 H 0.156 0.844 32 H 0.123 0.877 33 H 0.059 0.941 34 H 0.110 0.890 35 H 0.059 0.941 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.023 0.977 39 H 0.272 0.728 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.787 -2.035 -17.329 21.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.070 3.930 4 C -0.214 4.214 5 C -0.100 4.100 6 C -0.160 4.160 7 C -0.087 4.087 8 C 0.094 3.906 9 H 0.148 0.852 10 O -0.296 6.296 11 C -0.074 4.074 12 C 0.295 3.705 13 O -0.425 6.425 14 O -0.269 6.269 15 C 0.166 3.834 16 H 0.023 0.977 17 C -0.200 4.200 18 C -0.584 4.584 19 H 0.084 0.916 20 C -0.182 4.182 21 N -0.554 5.554 22 Si 0.804 3.196 23 H -0.187 1.187 24 H -0.200 1.200 25 H -0.195 1.195 26 C -0.158 4.158 27 H 0.136 0.864 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.176 0.824 31 H 0.173 0.827 32 H 0.141 0.859 33 H 0.078 0.922 34 H 0.129 0.871 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.101 0.899 38 H 0.042 0.958 39 H 0.081 0.919 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.398 -1.713 -16.946 20.494 hybrid contribution -0.095 -0.089 0.813 0.823 sum -11.493 -1.803 -16.133 19.890 Atomic orbital electron populations 1.23374 0.76272 1.05663 1.02384 1.86057 1.23653 1.26530 1.88679 1.19013 0.91962 0.85215 0.96781 1.21607 1.01473 0.91595 1.06747 1.21234 0.93606 0.98478 0.96687 1.21054 0.94761 0.97972 1.02248 1.19617 0.93285 0.93921 1.01892 1.20112 0.91621 0.92759 0.86079 0.85210 1.87990 1.87976 1.31612 1.22020 1.23209 1.01259 1.03870 0.79105 1.23865 0.75969 0.81389 0.89265 1.90587 1.40757 1.31113 1.80059 1.86468 1.73219 1.43266 1.23909 1.20395 0.92914 0.96084 0.74038 0.97726 1.21998 0.96081 0.99475 1.02476 1.21212 1.14216 1.31703 0.91307 0.91616 1.25819 0.96765 0.96055 0.99557 1.70007 1.28603 1.40601 1.16186 0.85255 0.78376 0.79036 0.76885 1.18703 1.19979 1.19453 1.20306 0.92594 0.97724 1.05186 0.86360 0.92109 0.90893 0.82351 0.82676 0.85923 0.92230 0.87134 0.92205 0.93197 0.89874 0.95774 0.91910 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -8.45 10.50 -92.43 -0.97 -9.42 16 3 C 0.12 3.17 6.69 22.51 0.15 3.32 16 4 C -0.20 -4.49 9.04 22.36 0.20 -4.29 16 5 C -0.08 -1.98 10.04 22.25 0.22 -1.76 16 6 C -0.14 -4.26 9.35 22.28 0.21 -4.05 16 7 C -0.09 -2.76 4.93 -19.88 -0.10 -2.86 16 8 C 0.15 5.20 2.84 29.10 0.08 5.28 16 9 H 0.13 3.56 7.69 -2.39 -0.02 3.54 16 10 O -0.38 -11.99 9.04 -129.95 -1.17 -13.17 16 11 C 0.02 0.42 10.81 113.37 1.23 1.64 16 12 C 0.45 20.81 7.25 71.24 0.52 21.32 16 13 O -0.54 -28.35 15.73 28.39 0.45 -27.91 16 14 O -0.35 -17.85 9.85 -51.37 -0.51 -18.36 16 15 C 0.22 12.51 2.56 29.85 0.08 12.59 16 16 H 0.00 0.32 7.16 -2.39 -0.02 0.30 16 17 C -0.14 -7.57 9.33 71.98 0.67 -6.90 16 18 C -0.55 -31.95 8.90 25.60 0.23 -31.73 16 19 H 0.07 3.78 7.81 -2.91 -0.02 3.76 16 20 C 0.02 1.00 5.30 84.66 0.45 1.45 16 21 N -0.92 -53.53 11.32 21.45 0.24 -53.29 16 22 Si 0.98 43.59 29.54 68.60 2.03 45.61 16 23 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 26 C -0.14 -4.25 9.62 22.37 0.22 -4.04 16 27 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.06 0.85 7.66 -2.38 -0.02 0.83 16 29 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 30 H 0.16 2.52 6.30 -2.91 -0.02 2.50 16 31 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.12 3.79 7.63 -2.91 -0.02 3.77 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.11 1.78 8.14 -2.38 -0.02 1.77 16 35 H 0.06 1.03 8.08 -2.39 -0.02 1.01 16 36 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.08 4.70 6.07 -2.39 -0.01 4.68 16 38 H 0.02 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 40 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -74.43 344.95 6.36 -68.06 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 1.04 Total: 17.10 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 5.26 Total: -8.64 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.24 Total: -53.29 kcal Atomic # 8 Polarization: -66.65 SS G_CDS: -2.20 Total: -68.85 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -74.43 6.36 -68.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850842878.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.832 kcal (2) G-P(sol) polarization free energy of solvation -74.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds