Wall clock time and date at job start Tue Mar 31 2020 07:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47078 * 2 1 4 4 O 1.42904 * 109.46744 * 179.97438 * 3 2 1 5 5 C 1.42900 * 113.99585 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47027 * 180.02562 * 5 4 3 7 7 O 1.45198 * 109.47213 * 64.99774 * 6 5 4 8 8 C 1.34543 * 117.00090 * 180.02562 * 7 6 5 9 9 O 1.21437 * 119.99969 * 359.97438 * 8 7 6 10 10 O 1.34600 * 119.99914 * 180.02562 * 8 7 6 11 11 C 1.35740 * 116.99502 * 175.17524 * 10 8 7 12 12 C 1.39288 * 119.80929 * 255.64504 * 11 10 8 13 13 C 1.36455 * 120.18466 * 179.76502 * 12 11 10 14 14 C 1.40821 * 119.80661 * 0.51070 * 13 12 11 15 15 C 1.41223 * 120.18001 * 179.72046 * 14 13 12 16 16 H 1.08009 * 120.00026 * 156.78923 * 15 14 13 17 17 C 1.39904 * 120.00153 * 336.79418 * 15 14 13 18 18 N 1.30871 * 119.99526 * 326.36583 * 17 15 14 19 19 Si 1.86798 * 120.00314 * 146.37307 * 17 15 14 20 20 H 1.48499 * 109.47429 * 94.97584 * 19 17 15 21 21 H 1.48503 * 109.47105 * 214.97591 * 19 17 15 22 22 H 1.48502 * 109.47086 * 334.97212 * 19 17 15 23 23 C 1.40826 * 119.63944 * 359.74391 * 14 13 12 24 24 C 1.36455 * 119.80738 * 359.97438 * 23 14 13 25 25 H 1.09003 * 109.47415 * 300.00436 * 1 2 3 26 26 H 1.09008 * 109.46560 * 60.00354 * 1 2 3 27 27 H 1.08998 * 109.47201 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47390 * 239.99763 * 2 1 3 29 29 H 1.09008 * 109.46560 * 119.99646 * 2 1 3 30 30 H 1.09006 * 109.46988 * 59.99874 * 3 2 1 31 31 H 1.08998 * 109.47016 * 299.99394 * 3 2 1 32 32 H 1.08998 * 109.47255 * 59.99810 * 5 4 3 33 33 H 1.09000 * 109.46971 * 300.00202 * 5 4 3 34 34 H 1.08998 * 109.46868 * 304.99392 * 6 5 4 35 35 H 1.08998 * 109.46608 * 184.99855 * 6 5 4 36 36 H 1.07997 * 119.90681 * 0.02562 * 12 11 10 37 37 H 1.07999 * 120.09519 * 180.23555 * 13 12 11 38 38 H 0.97003 * 119.99797 * 179.97438 * 18 17 15 39 39 H 1.08003 * 120.09822 * 179.97438 * 23 14 13 40 40 H 1.07997 * 119.90237 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4425 0.0006 5 6 4.0503 2.7479 0.0012 6 6 5.5755 2.6271 0.0012 7 8 6.0124 2.0127 -1.2397 8 6 7.3361 1.8327 -1.3994 9 8 8.1057 2.1796 -0.5264 10 8 7.8075 1.2690 -2.5271 11 6 9.1562 1.2081 -2.6683 12 6 9.8023 2.0890 -3.5323 13 6 11.1583 2.0378 -3.6766 14 6 11.9032 1.0836 -2.9570 15 6 13.3062 1.0197 -3.1047 16 1 13.9122 0.5842 -2.3239 17 6 13.9112 1.5206 -4.2625 18 7 13.2929 1.4360 -5.4128 19 14 15.6016 2.3098 -4.1664 20 1 16.6395 1.2977 -4.4881 21 1 15.6819 3.4279 -5.1404 22 1 15.8271 2.8313 -2.7944 23 6 11.2413 0.1932 -2.0896 24 6 9.8854 0.2618 -1.9526 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.7282 3.2886 0.8912 33 1 3.7290 3.2891 -0.8887 34 1 5.8911 2.0105 0.8428 35 1 6.0185 3.6190 0.0912 36 1 9.2290 2.8174 -4.0865 37 1 11.6582 2.7240 -4.3440 38 1 13.7122 1.7836 -6.2155 39 1 11.8053 -0.5417 -1.5344 40 1 9.3763 -0.4206 -1.2881 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858880916.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:20 Heat of formation + Delta-G solvation = -162.407702 kcal Electronic energy + Delta-G solvation = -22379.398354 eV Core-core repulsion = 18738.336631 eV Total energy + Delta-G solvation = -3641.061722 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.47212 -38.78363 -38.02841 -36.73757 -35.41298 -34.02838 -33.67119 -30.51022 -29.78724 -29.40039 -26.25949 -25.47444 -23.48472 -22.17298 -21.67072 -21.25102 -20.45059 -18.49950 -17.55642 -17.35244 -17.20484 -16.44482 -16.21729 -15.57795 -15.35234 -14.87374 -14.40745 -14.24626 -14.07716 -13.38681 -13.09658 -12.91657 -12.69384 -12.36947 -12.30759 -12.22822 -12.12811 -11.64025 -11.48549 -11.31946 -11.19629 -11.15017 -10.90950 -10.88789 -10.58760 -10.49403 -10.36810 -10.08035 -9.86533 -9.39270 -9.11727 -7.74236 -7.58146 -7.13481 -4.51103 1.87869 2.70678 2.94603 2.96769 2.98226 3.04137 3.16987 3.34177 3.75744 4.27270 4.59666 4.65431 4.77449 4.80962 4.94630 5.00349 5.13338 5.16673 5.20663 5.36156 5.43089 5.48633 5.57286 5.68383 5.83660 5.92949 6.10312 6.14597 6.30788 6.76495 6.81499 6.93919 6.98906 7.01017 7.27869 7.39143 7.68951 7.81787 7.83592 8.01846 8.33695 8.61420 8.63209 8.91546 9.80754 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.044774 B = 0.002350 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.219352 B =11914.039957 C =12036.432446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.061 3.939 4 O -0.382 6.382 5 C 0.065 3.935 6 C 0.082 3.918 7 O -0.330 6.330 8 C 0.569 3.431 9 O -0.544 6.544 10 O -0.243 6.243 11 C -0.085 4.085 12 C -0.071 4.071 13 C -0.178 4.178 14 C 0.123 3.877 15 C -0.451 4.451 16 H 0.088 0.912 17 C 0.086 3.914 18 N -0.753 5.753 19 Si 0.901 3.099 20 H -0.267 1.267 21 H -0.272 1.272 22 H -0.255 1.255 23 C -0.224 4.224 24 C -0.058 4.058 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.289 0.711 39 H 0.102 0.898 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.741 2.633 6.751 18.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.016 4.016 4 O -0.301 6.301 5 C -0.011 4.011 6 C 0.008 3.992 7 O -0.249 6.249 8 C 0.380 3.620 9 O -0.443 6.443 10 O -0.158 6.158 11 C -0.127 4.127 12 C -0.090 4.090 13 C -0.197 4.197 14 C 0.120 3.880 15 C -0.477 4.477 16 H 0.106 0.894 17 C -0.138 4.138 18 N -0.374 5.374 19 Si 0.724 3.276 20 H -0.192 1.192 21 H -0.196 1.196 22 H -0.178 1.178 23 C -0.243 4.243 24 C -0.077 4.077 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.129 0.871 38 H 0.100 0.900 39 H 0.120 0.880 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.563 2.516 6.577 17.998 hybrid contribution 0.622 0.705 0.123 0.948 sum -15.941 3.221 6.700 17.590 Atomic orbital electron populations 1.21696 0.94817 1.02254 1.01892 1.21471 0.95560 0.95639 1.03656 1.22562 0.80948 0.98035 1.00024 1.87990 1.19587 1.27092 1.95420 1.22577 0.91214 0.85793 1.01540 1.23104 0.92705 0.98884 0.84496 1.86305 1.21601 1.75679 1.41330 1.21960 0.81264 0.75346 0.83413 1.91023 1.57592 1.52394 1.43241 1.84687 1.24721 1.70580 1.35781 1.17890 0.78006 1.06456 1.10367 1.20356 0.94655 0.96178 0.97770 1.20649 0.91763 1.01878 1.05387 1.17668 0.93118 0.88397 0.88803 1.19658 0.92213 1.33617 1.02212 0.89354 1.26062 1.00471 0.92958 0.94314 1.69938 1.39186 1.28921 0.99369 0.86416 0.81323 0.79743 0.80165 1.19180 1.19625 1.17824 1.20524 0.92625 1.03314 1.07881 1.20401 0.94516 0.96356 0.96439 0.92656 0.92516 0.92004 0.90829 0.91121 0.93480 0.93222 0.90694 0.91844 0.90098 0.89327 0.88433 0.87142 0.90035 0.88011 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.13 -1.04 6.30 -26.73 -0.17 -1.21 16 3 C 0.06 0.54 5.94 37.16 0.22 0.76 16 4 O -0.38 -4.68 10.31 -38.80 -0.40 -5.08 16 5 C 0.07 0.66 6.33 37.16 0.24 0.90 16 6 C 0.08 1.09 5.85 37.16 0.22 1.30 16 7 O -0.33 -5.93 10.24 -49.01 -0.50 -6.43 16 8 C 0.57 12.21 8.81 101.05 0.89 13.10 16 9 O -0.54 -12.73 15.62 -27.41 -0.43 -13.15 16 10 O -0.24 -5.64 10.06 -31.84 -0.32 -5.96 16 11 C -0.09 -2.12 5.19 -38.81 -0.20 -2.32 16 12 C -0.07 -1.74 9.92 -39.83 -0.40 -2.14 16 13 C -0.18 -4.58 8.76 -39.25 -0.34 -4.92 16 14 C 0.12 3.24 5.56 -106.81 -0.59 2.65 16 15 C -0.45 -11.46 8.93 -37.83 -0.34 -11.80 16 16 H 0.09 2.14 8.03 -52.48 -0.42 1.72 16 17 C 0.09 2.05 4.72 -17.34 -0.08 1.97 16 18 N -0.75 -18.35 11.96 55.55 0.66 -17.69 16 19 Si 0.90 17.40 29.67 -169.99 -5.04 12.35 16 20 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16 21 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 22 H -0.25 -4.96 7.11 56.52 0.40 -4.56 16 23 C -0.22 -5.61 9.75 -39.25 -0.38 -5.99 16 24 C -0.06 -1.43 9.44 -39.84 -0.38 -1.81 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 37 H 0.11 2.82 6.65 -52.49 -0.35 2.47 16 38 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 39 H 0.10 2.35 8.06 -52.48 -0.42 1.92 16 40 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 351.27 15.07 5.29 5.29 Total: -1.00 -30.02 351.27 -7.51 -37.53 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.82 Total: 3.17 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -0.95 Total: -10.04 kcal Atomic # 7 Polarization: -18.35 SS G_CDS: 0.66 Total: -17.69 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -1.65 Total: -30.62 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.04 Total: 12.35 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.02 -7.51 -37.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858880916.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.878 kcal (2) G-P(sol) polarization free energy of solvation -30.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds