Wall clock time and date at job start Tue Mar 31 2020 07:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47078 * 2 1 4 4 O 1.42904 * 109.46744 * 179.97438 * 3 2 1 5 5 C 1.42900 * 113.99585 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47027 * 180.02562 * 5 4 3 7 7 O 1.45198 * 109.47213 * 64.99774 * 6 5 4 8 8 C 1.34543 * 117.00090 * 180.02562 * 7 6 5 9 9 O 1.21437 * 119.99969 * 359.97438 * 8 7 6 10 10 O 1.34600 * 119.99914 * 180.02562 * 8 7 6 11 11 C 1.35740 * 116.99502 * 175.17524 * 10 8 7 12 12 C 1.39288 * 119.80929 * 255.64504 * 11 10 8 13 13 C 1.36455 * 120.18466 * 179.76502 * 12 11 10 14 14 C 1.40821 * 119.80661 * 0.51070 * 13 12 11 15 15 C 1.41223 * 120.18001 * 179.72046 * 14 13 12 16 16 H 1.08009 * 120.00026 * 156.78923 * 15 14 13 17 17 C 1.39904 * 120.00153 * 336.79418 * 15 14 13 18 18 N 1.30871 * 119.99526 * 326.36583 * 17 15 14 19 19 Si 1.86798 * 120.00314 * 146.37307 * 17 15 14 20 20 H 1.48499 * 109.47429 * 94.97584 * 19 17 15 21 21 H 1.48503 * 109.47105 * 214.97591 * 19 17 15 22 22 H 1.48502 * 109.47086 * 334.97212 * 19 17 15 23 23 C 1.40826 * 119.63944 * 359.74391 * 14 13 12 24 24 C 1.36455 * 119.80738 * 359.97438 * 23 14 13 25 25 H 1.09003 * 109.47415 * 300.00436 * 1 2 3 26 26 H 1.09008 * 109.46560 * 60.00354 * 1 2 3 27 27 H 1.08998 * 109.47201 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47390 * 239.99763 * 2 1 3 29 29 H 1.09008 * 109.46560 * 119.99646 * 2 1 3 30 30 H 1.09006 * 109.46988 * 59.99874 * 3 2 1 31 31 H 1.08998 * 109.47016 * 299.99394 * 3 2 1 32 32 H 1.08998 * 109.47255 * 59.99810 * 5 4 3 33 33 H 1.09000 * 109.46971 * 300.00202 * 5 4 3 34 34 H 1.08998 * 109.46868 * 304.99392 * 6 5 4 35 35 H 1.08998 * 109.46608 * 184.99855 * 6 5 4 36 36 H 1.07997 * 119.90681 * 0.02562 * 12 11 10 37 37 H 1.07999 * 120.09519 * 180.23555 * 13 12 11 38 38 H 0.97003 * 119.99797 * 179.97438 * 18 17 15 39 39 H 1.08003 * 120.09822 * 179.97438 * 23 14 13 40 40 H 1.07997 * 119.90237 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4425 0.0006 5 6 4.0503 2.7479 0.0012 6 6 5.5755 2.6271 0.0012 7 8 6.0124 2.0127 -1.2397 8 6 7.3361 1.8327 -1.3994 9 8 8.1057 2.1796 -0.5264 10 8 7.8075 1.2690 -2.5271 11 6 9.1562 1.2081 -2.6683 12 6 9.8023 2.0890 -3.5323 13 6 11.1583 2.0378 -3.6766 14 6 11.9032 1.0836 -2.9570 15 6 13.3062 1.0197 -3.1047 16 1 13.9122 0.5842 -2.3239 17 6 13.9112 1.5206 -4.2625 18 7 13.2929 1.4360 -5.4128 19 14 15.6016 2.3098 -4.1664 20 1 16.6395 1.2977 -4.4881 21 1 15.6819 3.4279 -5.1404 22 1 15.8271 2.8313 -2.7944 23 6 11.2413 0.1932 -2.0896 24 6 9.8854 0.2618 -1.9526 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.7282 3.2886 0.8912 33 1 3.7290 3.2891 -0.8887 34 1 5.8911 2.0105 0.8428 35 1 6.0185 3.6190 0.0912 36 1 9.2290 2.8174 -4.0865 37 1 11.6582 2.7240 -4.3440 38 1 13.7122 1.7836 -6.2155 39 1 11.8053 -0.5417 -1.5344 40 1 9.3763 -0.4206 -1.2881 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858880916.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:19 Heat of formation + Delta-G solvation = -177.484417 kcal Electronic energy + Delta-G solvation = -22380.052129 eV Core-core repulsion = 18738.336631 eV Total energy + Delta-G solvation = -3641.715498 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.18195 -40.25263 -39.13564 -38.44440 -37.10037 -35.52597 -34.68999 -31.81197 -31.54883 -31.13749 -27.40872 -26.81186 -24.89429 -23.49586 -23.12120 -22.35733 -22.21765 -20.14815 -19.43639 -19.02214 -18.36739 -17.55190 -17.40284 -17.13889 -16.75219 -16.02586 -15.91759 -15.75176 -15.17677 -14.67600 -14.54825 -14.41635 -14.13309 -13.95285 -13.58595 -13.47648 -13.10536 -13.00390 -12.92794 -12.64333 -12.59232 -12.39138 -12.31844 -12.09846 -11.99456 -11.84661 -11.77902 -11.69635 -11.25828 -10.94939 -10.61558 -9.69079 -9.51663 -8.93881 -6.44010 0.20789 0.99369 1.05703 1.32616 1.38683 1.49200 1.58902 2.14727 2.48214 2.58992 3.32227 3.57012 3.78332 3.99754 4.04949 4.12082 4.21420 4.23999 4.26129 4.37332 4.43710 4.46096 4.63217 4.65324 4.77583 4.86083 4.89256 4.98427 5.06146 5.15448 5.16468 5.23883 5.35873 5.47438 5.48002 5.79881 5.89410 5.94386 6.12347 6.21720 6.42875 6.70359 6.75274 7.11755 8.05047 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.044774 B = 0.002350 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.219352 B =11914.039957 C =12036.432446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.056 3.944 4 O -0.416 6.416 5 C 0.069 3.931 6 C 0.070 3.930 7 O -0.329 6.329 8 C 0.574 3.426 9 O -0.566 6.566 10 O -0.251 6.251 11 C -0.096 4.096 12 C -0.076 4.076 13 C -0.194 4.194 14 C 0.095 3.905 15 C -0.477 4.477 16 H 0.091 0.909 17 C 0.050 3.950 18 N -0.781 5.781 19 Si 0.979 3.021 20 H -0.255 1.255 21 H -0.261 1.261 22 H -0.258 1.258 23 C -0.239 4.239 24 C -0.065 4.065 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.301 0.699 39 H 0.114 0.886 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.280 3.704 7.202 19.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.166 4.166 3 C -0.019 4.019 4 O -0.336 6.336 5 C -0.007 4.007 6 C -0.002 4.002 7 O -0.247 6.247 8 C 0.387 3.613 9 O -0.466 6.466 10 O -0.166 6.166 11 C -0.137 4.137 12 C -0.095 4.095 13 C -0.213 4.213 14 C 0.092 3.908 15 C -0.503 4.503 16 H 0.109 0.891 17 C -0.173 4.173 18 N -0.403 5.403 19 Si 0.798 3.202 20 H -0.180 1.180 21 H -0.185 1.185 22 H -0.181 1.181 23 C -0.258 4.258 24 C -0.084 4.084 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.132 0.868 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.134 0.866 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.132 0.868 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.144 3.579 7.026 18.870 hybrid contribution 0.631 0.352 0.012 0.723 sum -16.512 3.931 7.039 18.375 Atomic orbital electron populations 1.21668 0.93025 1.02817 1.02663 1.21508 0.97110 0.95426 1.02544 1.22748 0.79351 0.98458 1.01391 1.87944 1.21535 1.28371 1.95741 1.22718 0.88603 0.85541 1.03850 1.23633 0.95087 0.99182 0.82338 1.86344 1.19000 1.75625 1.43759 1.21799 0.82357 0.74800 0.82393 1.91003 1.58529 1.53370 1.43717 1.84567 1.23986 1.71196 1.36852 1.17981 0.78558 1.06633 1.10574 1.20557 0.94563 0.96553 0.97799 1.20661 0.92322 1.02282 1.06060 1.18018 0.94037 0.89076 0.89630 1.19950 0.92207 1.34943 1.03183 0.89063 1.26926 1.04497 0.92569 0.93294 1.69929 1.41115 1.28909 1.00300 0.85251 0.76054 0.78921 0.80005 1.17954 1.18509 1.18119 1.20723 0.93084 1.03690 1.08285 1.20594 0.94539 0.96612 0.96614 0.91550 0.92034 0.91614 0.92484 0.91751 0.91365 0.92448 0.86794 0.90842 0.90543 0.87745 0.86568 0.87598 0.88751 0.86835 0.87387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.91 71.98 0.71 -0.82 16 2 C -0.13 -2.01 6.30 30.60 0.19 -1.82 16 3 C 0.06 0.89 5.94 71.98 0.43 1.32 16 4 O -0.42 -9.56 10.31 -145.57 -1.50 -11.07 16 5 C 0.07 1.23 6.33 71.98 0.46 1.69 16 6 C 0.07 1.76 5.85 71.98 0.42 2.18 16 7 O -0.33 -11.56 10.24 -45.96 -0.47 -12.03 16 8 C 0.57 24.58 8.81 113.37 1.00 25.58 16 9 O -0.57 -26.45 15.62 27.87 0.44 -26.01 16 10 O -0.25 -11.68 10.06 10.82 0.11 -11.57 16 11 C -0.10 -4.79 5.19 22.77 0.12 -4.67 16 12 C -0.08 -3.79 9.92 22.11 0.22 -3.57 16 13 C -0.19 -10.20 8.76 22.49 0.20 -10.01 16 14 C 0.10 5.13 5.56 -21.28 -0.12 5.01 16 15 C -0.48 -24.52 8.93 23.41 0.21 -24.31 16 16 H 0.09 4.47 8.03 -2.91 -0.02 4.45 16 17 C 0.05 2.34 4.72 85.24 0.40 2.74 16 18 N -0.78 -38.00 11.96 21.82 0.26 -37.74 16 19 Si 0.98 34.94 29.67 68.60 2.04 36.98 16 20 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16 21 H -0.26 -8.81 7.11 99.48 0.71 -8.11 16 22 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 23 C -0.24 -12.18 9.75 22.49 0.22 -11.96 16 24 C -0.06 -3.23 9.44 22.10 0.21 -3.02 16 25 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.06 0.59 8.14 -2.38 -0.02 0.58 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.07 0.78 8.14 -2.38 -0.02 0.77 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.12 5.18 8.06 -2.91 -0.02 5.15 16 37 H 0.11 5.53 6.65 -2.91 -0.02 5.51 16 38 H 0.30 12.87 8.30 -92.71 -0.77 12.10 16 39 H 0.11 5.33 8.06 -2.91 -0.02 5.31 16 40 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -64.86 351.27 6.56 -58.30 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 1.02 Total: 24.79 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 4.66 Total: -21.65 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.26 Total: -37.74 kcal Atomic # 8 Polarization: -59.25 SS G_CDS: -1.43 Total: -60.68 kcal Atomic # 14 Polarization: 34.94 SS G_CDS: 2.04 Total: 36.98 kcal Total: -64.86 6.56 -58.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858880916.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.182 kcal (2) G-P(sol) polarization free energy of solvation -64.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds