Wall clock time and date at job start Tue Mar 31 2020 06:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47038 * 2 1 4 4 C 1.52998 * 109.47544 * 119.99790 * 2 1 3 5 5 C 1.52999 * 109.47363 * 64.99827 * 4 2 1 6 6 O 1.45199 * 109.47373 * 180.02562 * 5 4 2 7 7 C 1.34543 * 116.99746 * 179.97438 * 6 5 4 8 8 O 1.21431 * 120.00383 * 0.02562 * 7 6 5 9 9 O 1.34578 * 119.99728 * 179.97438 * 7 6 5 10 10 C 1.35932 * 117.00052 * 185.35160 * 9 7 6 11 11 C 1.38816 * 120.02245 * 246.55872 * 10 9 7 12 12 C 1.38194 * 120.08514 * 179.72126 * 11 10 9 13 13 C 1.38160 * 120.11870 * 0.55429 * 12 11 10 14 14 C 1.38889 * 120.03962 * 359.72082 * 13 12 11 15 15 O 1.35750 * 120.04297 * 179.97438 * 14 13 12 16 16 C 1.34828 * 117.00026 * 186.02082 * 15 14 13 17 17 H 1.08001 * 120.00266 * 354.89150 * 16 15 14 18 18 C 1.38658 * 119.99885 * 174.89726 * 16 15 14 19 19 N 1.31561 * 119.99918 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00039 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47591 * 59.99501 * 20 18 16 22 22 H 1.48504 * 109.47198 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47097 * 299.99602 * 20 18 16 24 24 C 1.38566 * 120.01735 * 66.83420 * 10 9 7 25 25 H 1.08998 * 109.46555 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47200 * 299.99825 * 1 2 3 27 27 H 1.08997 * 109.46952 * 60.00408 * 1 2 3 28 28 H 1.08994 * 109.47638 * 239.99918 * 2 1 3 29 29 H 1.09000 * 109.47604 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46687 * 299.99742 * 3 2 1 31 31 H 1.08998 * 109.47442 * 59.99425 * 3 2 1 32 32 H 1.09008 * 109.46934 * 304.99941 * 4 2 1 33 33 H 1.08998 * 109.47878 * 185.00662 * 4 2 1 34 34 H 1.09005 * 109.46516 * 60.00094 * 5 4 2 35 35 H 1.09005 * 109.47214 * 300.00787 * 5 4 2 36 36 H 1.07999 * 119.95637 * 359.97438 * 11 10 9 37 37 H 1.07992 * 119.94214 * 180.25530 * 12 11 10 38 38 H 1.07995 * 119.97935 * 179.70565 * 13 12 11 39 39 H 0.97000 * 119.99801 * 180.02562 * 19 18 16 40 40 H 1.07992 * 120.06153 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1881 6 8 2.1189 -2.8797 2.3739 7 6 1.8443 -4.1928 2.4760 8 8 1.2184 -4.7523 1.5986 9 8 2.2643 -4.8865 3.5500 10 6 2.0520 -6.2291 3.5391 11 6 1.1683 -6.7999 4.4449 12 6 0.9472 -8.1640 4.4312 13 6 1.6132 -8.9652 3.5238 14 6 2.5027 -8.4002 2.6191 15 8 3.1575 -9.1875 1.7279 16 6 4.0972 -8.5958 0.9633 17 1 4.2424 -7.5269 1.0166 18 6 4.8771 -9.3596 0.1083 19 7 4.7005 -10.6617 0.0436 20 14 6.1796 -8.5399 -0.9505 21 1 7.1677 -7.8556 -0.0787 22 1 6.8709 -9.5680 -1.7694 23 1 5.5358 -7.5446 -1.8452 24 6 2.7218 -7.0295 2.6277 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6054 -0.2616 2.1370 33 1 3.1263 -0.6442 1.2952 34 1 2.0700 -2.6549 0.3003 35 1 0.5490 -2.2724 1.1421 36 1 0.6500 -6.1767 5.1585 37 1 0.2561 -8.6051 5.1341 38 1 1.4422 -10.0315 3.5183 39 1 5.2463 -11.1960 -0.5543 40 1 3.4126 -6.5877 1.9250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859191186.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:03 Heat of formation + Delta-G solvation = -137.026050 kcal Electronic energy + Delta-G solvation = -22992.978876 eV Core-core repulsion = 19353.017785 eV Total energy + Delta-G solvation = -3639.961091 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.12666 -39.36431 -38.34777 -36.98465 -36.03157 -35.67767 -32.34581 -30.38755 -29.64611 -28.96762 -27.52741 -25.54085 -24.55837 -22.92270 -21.75969 -21.05938 -20.37638 -18.90760 -18.37029 -17.79930 -17.01095 -16.57602 -15.73286 -15.29653 -15.19474 -14.90378 -14.38458 -14.32805 -14.09879 -13.78576 -13.65665 -13.20632 -12.98990 -12.77168 -12.53641 -12.20670 -12.00747 -11.90074 -11.63893 -11.33439 -11.31875 -11.18878 -11.11137 -11.00400 -10.92999 -10.76792 -10.58718 -10.56314 -10.42117 -9.60085 -8.90661 -8.24228 -7.41270 -6.51489 -4.11027 1.26485 2.12001 2.28291 2.58190 3.10852 3.11921 3.14520 3.92120 4.11282 4.42821 4.45609 4.48917 4.69734 4.83768 5.00063 5.01277 5.11451 5.16567 5.28295 5.31013 5.44808 5.49761 5.53585 5.55792 5.65126 5.71478 5.79071 5.86893 5.94457 5.97369 6.01197 6.09620 6.41198 6.52490 6.84601 6.97612 7.02971 7.06600 7.28373 7.55565 7.91755 8.21408 8.93270 9.58316 10.65723 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.012686 B = 0.003934 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.654136 B = 7116.073647 C = 8911.996411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.115 4.115 5 C 0.078 3.922 6 O -0.331 6.331 7 C 0.593 3.407 8 O -0.524 6.524 9 O -0.263 6.263 10 C 0.127 3.873 11 C -0.203 4.203 12 C -0.064 4.064 13 C -0.182 4.182 14 C 0.164 3.836 15 O -0.168 6.168 16 C -0.394 4.394 17 H 0.090 0.910 18 C 0.043 3.957 19 N -0.859 5.859 20 Si 0.941 3.059 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.269 1.269 24 C -0.229 4.229 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.118 0.882 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.272 0.728 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.685 18.706 2.423 19.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.153 4.153 5 C 0.005 3.995 6 O -0.250 6.250 7 C 0.402 3.598 8 O -0.420 6.420 9 O -0.179 6.179 10 C 0.087 3.913 11 C -0.222 4.222 12 C -0.082 4.082 13 C -0.201 4.201 14 C 0.109 3.891 15 O -0.071 6.071 16 C -0.470 4.470 17 H 0.108 0.892 18 C -0.162 4.162 19 N -0.493 5.493 20 Si 0.765 3.235 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.194 1.194 24 C -0.248 4.248 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.137 0.863 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.082 0.918 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.669 18.214 2.116 19.193 hybrid contribution 0.629 0.431 -0.701 1.036 sum -5.040 18.645 1.415 19.366 Atomic orbital electron populations 1.21968 0.94899 1.02277 1.02124 1.21046 0.96225 0.96479 0.97488 1.21816 1.01199 0.95267 1.02023 1.21683 1.02656 0.91619 0.99331 1.23358 1.00162 0.91607 0.84402 1.86216 1.73805 1.18725 1.46221 1.20636 0.76578 0.81772 0.80777 1.91138 1.40847 1.70093 1.39969 1.84267 1.74377 1.20260 1.38991 1.18150 0.97936 0.76745 0.98509 1.20445 1.02077 0.95686 1.04029 1.20496 0.98074 0.92148 0.97530 1.20375 1.01539 1.00271 0.97912 1.19093 0.91964 0.88814 0.89210 1.83997 1.45629 1.35017 1.42412 1.21275 1.12599 0.93400 1.19750 0.89227 1.25289 0.98013 0.95477 0.97448 1.70024 1.38581 1.04624 1.36049 0.85782 0.79688 0.78657 0.79387 1.19344 1.20060 1.19406 1.21235 1.06048 0.94280 1.03272 0.92242 0.92362 0.92356 0.90578 0.92408 0.92363 0.92457 0.90411 0.90323 0.90490 0.90404 0.86348 0.85635 0.85641 0.91783 0.84928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 8.95 37.16 0.33 -0.76 16 2 C -0.09 -0.68 2.92 -90.62 -0.26 -0.94 16 3 C -0.15 -0.89 9.19 37.16 0.34 -0.55 16 4 C -0.12 -0.99 5.06 -26.73 -0.14 -1.13 16 5 C 0.08 0.92 5.23 37.16 0.19 1.11 16 6 O -0.33 -5.07 10.27 -47.98 -0.49 -5.57 16 7 C 0.59 11.10 8.71 101.05 0.88 11.98 16 8 O -0.52 -11.08 15.49 -27.41 -0.42 -11.51 16 9 O -0.26 -5.13 10.09 -32.38 -0.33 -5.46 16 10 C 0.13 2.65 5.34 -39.25 -0.21 2.44 16 11 C -0.20 -3.73 9.98 -39.38 -0.39 -4.12 16 12 C -0.06 -1.13 10.04 -39.63 -0.40 -1.53 16 13 C -0.18 -3.79 9.99 -39.37 -0.39 -4.18 16 14 C 0.16 4.04 6.64 -39.13 -0.26 3.78 16 15 O -0.17 -4.81 9.76 0.06 0.00 -4.81 16 16 C -0.39 -11.21 9.49 30.89 0.29 -10.92 16 17 H 0.09 2.41 5.21 -52.49 -0.27 2.14 16 18 C 0.04 1.18 5.49 -17.51 -0.10 1.09 16 19 N -0.86 -25.10 13.67 55.48 0.76 -24.34 16 20 Si 0.94 20.74 29.55 -169.99 -5.02 15.71 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 C -0.23 -5.36 8.30 -39.25 -0.33 -5.69 16 25 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 0.88 6.56 -51.93 -0.34 0.54 16 36 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 37 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.13 2.43 8.06 -52.49 -0.42 2.01 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.13 3.21 5.64 -52.49 -0.30 2.92 16 LS Contribution 345.21 15.07 5.20 5.20 Total: -1.00 -32.07 345.21 -6.20 -38.27 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -5.46 Total: 1.91 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -0.43 Total: -9.41 kcal Atomic # 7 Polarization: -25.10 SS G_CDS: 0.76 Total: -24.34 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -1.24 Total: -27.34 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.07 -6.20 -38.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859191186.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.754 kcal (2) G-P(sol) polarization free energy of solvation -32.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds