Wall clock time and date at job start Tue Mar 31 2020 06:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47038 * 2 1 4 4 C 1.52998 * 109.47544 * 119.99790 * 2 1 3 5 5 C 1.52999 * 109.47363 * 64.99827 * 4 2 1 6 6 O 1.45199 * 109.47373 * 180.02562 * 5 4 2 7 7 C 1.34543 * 116.99746 * 179.97438 * 6 5 4 8 8 O 1.21431 * 120.00383 * 0.02562 * 7 6 5 9 9 O 1.34578 * 119.99728 * 179.97438 * 7 6 5 10 10 C 1.35932 * 117.00052 * 185.35160 * 9 7 6 11 11 C 1.38816 * 120.02245 * 246.55872 * 10 9 7 12 12 C 1.38194 * 120.08514 * 179.72126 * 11 10 9 13 13 C 1.38160 * 120.11870 * 0.55429 * 12 11 10 14 14 C 1.38889 * 120.03962 * 359.72082 * 13 12 11 15 15 O 1.35750 * 120.04297 * 179.97438 * 14 13 12 16 16 C 1.34828 * 117.00026 * 186.02082 * 15 14 13 17 17 H 1.08001 * 120.00266 * 354.89150 * 16 15 14 18 18 C 1.38658 * 119.99885 * 174.89726 * 16 15 14 19 19 N 1.31561 * 119.99918 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00039 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47591 * 59.99501 * 20 18 16 22 22 H 1.48504 * 109.47198 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47097 * 299.99602 * 20 18 16 24 24 C 1.38566 * 120.01735 * 66.83420 * 10 9 7 25 25 H 1.08998 * 109.46555 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47200 * 299.99825 * 1 2 3 27 27 H 1.08997 * 109.46952 * 60.00408 * 1 2 3 28 28 H 1.08994 * 109.47638 * 239.99918 * 2 1 3 29 29 H 1.09000 * 109.47604 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46687 * 299.99742 * 3 2 1 31 31 H 1.08998 * 109.47442 * 59.99425 * 3 2 1 32 32 H 1.09008 * 109.46934 * 304.99941 * 4 2 1 33 33 H 1.08998 * 109.47878 * 185.00662 * 4 2 1 34 34 H 1.09005 * 109.46516 * 60.00094 * 5 4 2 35 35 H 1.09005 * 109.47214 * 300.00787 * 5 4 2 36 36 H 1.07999 * 119.95637 * 359.97438 * 11 10 9 37 37 H 1.07992 * 119.94214 * 180.25530 * 12 11 10 38 38 H 1.07995 * 119.97935 * 179.70565 * 13 12 11 39 39 H 0.97000 * 119.99801 * 180.02562 * 19 18 16 40 40 H 1.07992 * 120.06153 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1881 6 8 2.1189 -2.8797 2.3739 7 6 1.8443 -4.1928 2.4760 8 8 1.2184 -4.7523 1.5986 9 8 2.2643 -4.8865 3.5500 10 6 2.0520 -6.2291 3.5391 11 6 1.1683 -6.7999 4.4449 12 6 0.9472 -8.1640 4.4312 13 6 1.6132 -8.9652 3.5238 14 6 2.5027 -8.4002 2.6191 15 8 3.1575 -9.1875 1.7279 16 6 4.0972 -8.5958 0.9633 17 1 4.2424 -7.5269 1.0166 18 6 4.8771 -9.3596 0.1083 19 7 4.7005 -10.6617 0.0436 20 14 6.1796 -8.5399 -0.9505 21 1 7.1677 -7.8556 -0.0787 22 1 6.8709 -9.5680 -1.7694 23 1 5.5358 -7.5446 -1.8452 24 6 2.7218 -7.0295 2.6277 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6054 -0.2616 2.1370 33 1 3.1263 -0.6442 1.2952 34 1 2.0700 -2.6549 0.3003 35 1 0.5490 -2.2724 1.1421 36 1 0.6500 -6.1767 5.1585 37 1 0.2561 -8.6051 5.1341 38 1 1.4422 -10.0315 3.5183 39 1 5.2463 -11.1960 -0.5543 40 1 3.4126 -6.5877 1.9250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859191186.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:02 Heat of formation + Delta-G solvation = -154.726104 kcal Electronic energy + Delta-G solvation = -22993.746408 eV Core-core repulsion = 19353.017785 eV Total energy + Delta-G solvation = -3640.728623 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.65042 -40.93450 -39.92176 -38.11951 -37.47797 -37.04794 -34.36897 -31.63171 -30.98845 -30.59499 -28.05622 -27.52891 -25.84071 -24.10208 -23.44811 -22.59413 -21.12949 -20.27448 -20.20088 -19.48006 -18.41065 -18.19462 -16.93686 -16.88166 -16.71365 -16.11035 -16.03435 -15.71068 -15.39464 -15.02336 -14.89859 -14.73732 -14.44913 -13.95932 -13.71211 -13.34953 -13.11529 -13.07725 -12.94951 -12.80984 -12.70092 -12.56286 -12.43210 -12.22594 -12.08338 -12.00401 -11.86785 -11.59840 -11.56965 -11.46793 -10.88187 -9.88193 -9.20971 -8.55121 -6.24700 -0.26092 0.49376 0.75438 1.07022 1.29348 1.39719 1.45495 2.11527 2.64086 2.91989 3.03220 3.36578 3.70627 3.75416 3.91692 3.93915 4.04628 4.10744 4.15602 4.26037 4.30332 4.42161 4.51318 4.69909 4.78168 4.82022 4.86178 4.90944 4.98004 4.99893 5.05450 5.07138 5.26088 5.29095 5.40237 5.41092 5.44300 5.47058 5.51716 5.90979 5.94758 6.70358 6.88329 7.62390 8.66752 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.012686 B = 0.003934 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.654136 B = 7116.073647 C = 8911.996411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.092 4.092 3 C -0.143 4.143 4 C -0.107 4.107 5 C 0.069 3.931 6 O -0.323 6.323 7 C 0.595 3.405 8 O -0.553 6.553 9 O -0.262 6.262 10 C 0.115 3.885 11 C -0.178 4.178 12 C -0.044 4.044 13 C -0.185 4.185 14 C 0.128 3.872 15 O -0.217 6.217 16 C -0.421 4.421 17 H 0.090 0.910 18 C -0.014 4.014 19 N -0.911 5.911 20 Si 1.013 2.987 21 H -0.257 1.257 22 H -0.262 1.262 23 H -0.262 1.262 24 C -0.246 4.246 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.162 0.838 37 H 0.183 0.817 38 H 0.136 0.864 39 H 0.276 0.724 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.704 21.002 3.862 22.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.110 4.110 3 C -0.201 4.201 4 C -0.145 4.145 5 C -0.003 4.003 6 O -0.241 6.241 7 C 0.406 3.594 8 O -0.452 6.452 9 O -0.177 6.177 10 C 0.074 3.926 11 C -0.197 4.197 12 C -0.062 4.062 13 C -0.204 4.204 14 C 0.077 3.923 15 O -0.123 6.123 16 C -0.496 4.496 17 H 0.107 0.893 18 C -0.212 4.212 19 N -0.548 5.548 20 Si 0.831 3.169 21 H -0.181 1.181 22 H -0.186 1.186 23 H -0.187 1.187 24 C -0.266 4.266 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.179 0.821 37 H 0.200 0.800 38 H 0.154 0.846 39 H 0.086 0.914 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.714 20.562 3.597 21.927 hybrid contribution 0.711 -0.098 -0.915 1.163 sum -6.003 20.464 2.681 21.494 Atomic orbital electron populations 1.21980 0.94679 1.01794 1.02892 1.21056 0.96406 0.97081 0.96505 1.21800 1.01308 0.94271 1.02691 1.21724 1.02968 0.89210 1.00554 1.23769 1.00600 0.92958 0.82989 1.86277 1.73439 1.16752 1.47665 1.20757 0.75971 0.82605 0.80085 1.91122 1.42328 1.70920 1.40822 1.84250 1.74606 1.19615 1.39260 1.18375 0.98297 0.77260 0.98626 1.21075 0.99528 0.96532 1.02563 1.21121 0.97082 0.91485 0.96499 1.20793 1.00594 1.01516 0.97486 1.19686 0.93076 0.89435 0.90131 1.83957 1.47362 1.36423 1.44583 1.21642 1.13524 0.93755 1.20720 0.89259 1.26510 1.00094 0.96123 0.98517 1.70143 1.40512 1.06300 1.37834 0.84747 0.76649 0.77927 0.77539 1.18138 1.18626 1.18653 1.21188 1.06830 0.94391 1.04172 0.93318 0.91708 0.91546 0.90909 0.92262 0.91637 0.91882 0.89441 0.90034 0.91170 0.89855 0.82051 0.80000 0.84595 0.91433 0.87169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 8.95 71.98 0.64 -1.30 16 2 C -0.09 -1.18 2.92 -10.79 -0.03 -1.21 16 3 C -0.14 -1.45 9.19 71.98 0.66 -0.79 16 4 C -0.11 -1.68 5.06 30.59 0.15 -1.52 16 5 C 0.07 1.58 5.23 71.98 0.38 1.95 16 6 O -0.32 -9.62 10.27 -46.94 -0.48 -10.10 16 7 C 0.60 22.02 8.71 113.37 0.99 23.01 16 8 O -0.55 -23.57 15.49 27.89 0.43 -23.14 16 9 O -0.26 -9.91 10.09 8.90 0.09 -9.82 16 10 C 0.12 4.68 5.34 22.49 0.12 4.80 16 11 C -0.18 -5.83 9.98 22.40 0.22 -5.61 16 12 C -0.04 -1.38 10.04 22.24 0.22 -1.15 16 13 C -0.18 -7.52 9.99 22.41 0.22 -7.29 16 14 C 0.13 6.52 6.64 22.56 0.15 6.67 16 15 O -0.22 -13.23 9.76 -22.72 -0.22 -13.45 16 16 C -0.42 -25.34 9.49 67.92 0.64 -24.70 16 17 H 0.09 5.15 5.21 -2.91 -0.02 5.13 16 18 C -0.01 -0.78 5.49 84.83 0.47 -0.31 16 19 N -0.91 -55.80 13.67 21.61 0.30 -55.51 16 20 Si 1.01 43.81 29.55 68.60 2.03 45.84 16 21 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 22 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 23 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 24 C -0.25 -11.89 8.30 22.49 0.19 -11.70 16 25 H 0.05 0.70 6.56 -2.39 -0.02 0.69 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.58 8.14 -2.38 -0.02 0.57 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.08 1.82 6.56 -2.38 -0.02 1.80 16 36 H 0.16 3.99 8.06 -2.91 -0.02 3.97 16 37 H 0.18 3.70 8.06 -2.91 -0.02 3.68 16 38 H 0.14 5.17 8.06 -2.91 -0.02 5.14 16 39 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 40 H 0.11 5.70 5.64 -2.91 -0.02 5.69 16 Total: -1.00 -74.49 345.21 8.21 -66.28 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 1.04 Total: 19.06 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: 5.03 Total: -19.16 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.30 Total: -55.51 kcal Atomic # 8 Polarization: -56.33 SS G_CDS: -0.18 Total: -56.51 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -74.49 8.21 -66.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859191186.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.449 kcal (2) G-P(sol) polarization free energy of solvation -74.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds