Wall clock time and date at job start Tue Mar 31 2020 07:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.46873 * 2 1 4 4 C 1.42901 * 113.99731 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47213 * 60.00280 * 4 3 2 6 6 C 1.53000 * 109.47234 * 300.00083 * 4 3 2 7 7 C 1.50704 * 109.46928 * 180.02562 * 4 3 2 8 8 O 1.20825 * 120.00199 * 359.97438 * 7 4 3 9 9 O 1.34265 * 119.99869 * 180.02562 * 7 4 3 10 10 C 1.35922 * 117.00003 * 185.33868 * 9 7 4 11 11 C 1.38827 * 120.01820 * 246.46597 * 10 9 7 12 12 C 1.38194 * 120.07844 * 179.74190 * 11 10 9 13 13 C 1.38153 * 120.12464 * 0.50992 * 12 11 10 14 14 C 1.38900 * 120.04047 * 359.76526 * 13 12 11 15 15 O 1.35743 * 120.03889 * 179.97438 * 14 13 12 16 16 C 1.34834 * 116.99997 * 185.96787 * 15 14 13 17 17 H 1.08001 * 119.99641 * 354.90511 * 16 15 14 18 18 C 1.38658 * 120.00118 * 174.90687 * 16 15 14 19 19 N 1.31551 * 119.99986 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99782 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47216 * 60.00513 * 20 18 16 22 22 H 1.48501 * 109.46776 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47590 * 299.99959 * 20 18 16 24 24 C 1.38568 * 120.02302 * 66.74189 * 10 9 7 25 25 H 1.09003 * 109.47012 * 299.99433 * 1 2 3 26 26 H 1.08998 * 109.47471 * 59.99852 * 1 2 3 27 27 H 1.08997 * 109.47030 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47012 * 240.00567 * 2 1 3 29 29 H 1.08998 * 109.47471 * 120.00148 * 2 1 3 30 30 H 1.09010 * 109.46992 * 179.97438 * 5 4 3 31 31 H 1.08994 * 109.47185 * 299.99443 * 5 4 3 32 32 H 1.08993 * 109.47207 * 60.00030 * 5 4 3 33 33 H 1.09008 * 109.47084 * 300.00362 * 6 4 3 34 34 H 1.08995 * 109.46954 * 60.00066 * 6 4 3 35 35 H 1.08998 * 109.47544 * 180.02562 * 6 4 3 36 36 H 1.07997 * 119.96291 * 0.02562 * 11 10 9 37 37 H 1.08000 * 119.93447 * 180.23478 * 12 11 10 38 38 H 1.07994 * 119.98224 * 179.74884 * 13 12 11 39 39 H 0.97000 * 120.00271 * 180.02562 * 19 18 16 40 40 H 1.08006 * 120.06282 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.9956 0.7817 -1.2502 6 6 3.9967 0.7812 1.2483 7 6 3.8193 2.9162 0.0001 8 8 2.9641 3.7697 0.0005 9 8 5.1159 3.2651 -0.0008 10 6 5.3986 4.5897 0.1126 11 6 5.9848 5.2680 -0.9475 12 6 6.2678 6.6159 -0.8355 13 6 5.9783 7.2904 0.3350 14 6 5.3970 6.6155 1.4008 15 8 5.1130 7.2780 2.5510 16 6 4.6653 6.5409 3.5875 17 1 4.4691 5.4871 3.4557 18 6 4.4569 7.1359 4.8225 19 7 4.6954 8.4196 4.9828 20 14 3.8360 6.1147 6.2581 21 1 4.8021 5.0237 6.5440 22 1 3.6966 6.9798 7.4571 23 1 2.5154 5.5291 5.9146 24 6 5.1072 5.2627 1.2883 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 5.0823 0.8682 -1.2508 31 1 3.7147 -0.2714 -1.2502 32 1 3.5925 1.2653 -2.1399 33 1 3.5942 1.2646 2.1386 34 1 3.7157 -0.2719 1.2482 35 1 5.0832 0.8676 1.2481 36 1 6.2156 4.7426 -1.8624 37 1 6.7204 7.1422 -1.6629 38 1 6.2042 8.3429 0.4214 39 1 4.5500 8.8357 5.8468 40 1 4.6549 4.7357 2.1155 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870434752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:52 Heat of formation + Delta-G solvation = -120.372715 kcal Electronic energy + Delta-G solvation = -23863.270151 eV Core-core repulsion = 20224.031202 eV Total energy + Delta-G solvation = -3639.238948 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.12306 -39.29156 -38.48643 -36.82499 -35.71949 -33.47843 -32.30488 -30.87861 -29.67198 -28.91475 -27.75008 -25.55013 -24.94956 -23.13600 -21.79130 -21.42780 -20.15864 -18.28910 -17.75277 -17.46518 -16.63560 -16.12830 -15.85676 -15.69410 -15.12640 -14.54290 -14.42635 -14.18487 -13.78429 -13.64156 -13.52899 -13.16352 -12.78444 -12.67283 -12.58488 -12.47286 -12.25478 -12.05758 -11.91541 -11.60477 -11.39367 -11.31235 -11.19294 -11.05577 -10.82148 -10.52222 -10.35589 -10.05213 -9.83101 -9.52735 -8.87005 -8.15373 -7.35521 -6.48119 -4.07485 1.67236 2.20435 2.34309 2.66088 3.12357 3.14134 3.16281 3.71376 3.94942 4.39162 4.45651 4.59908 4.72691 4.82544 4.96524 5.04250 5.09454 5.19056 5.21057 5.23127 5.44611 5.46935 5.55908 5.59411 5.67979 5.77285 5.79306 5.92843 5.93991 5.99563 6.14174 6.25900 6.55445 6.84900 6.91633 6.99341 7.08539 7.12941 7.32633 7.59691 7.95324 8.14629 8.96815 9.62832 10.69285 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.013045 B = 0.004969 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.955631 B = 5633.242993 C = 7250.611509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.357 6.357 4 C 0.132 3.868 5 C -0.176 4.176 6 C -0.179 4.179 7 C 0.463 3.537 8 O -0.459 6.459 9 O -0.291 6.291 10 C 0.122 3.878 11 C -0.210 4.210 12 C -0.064 4.064 13 C -0.187 4.187 14 C 0.165 3.835 15 O -0.170 6.170 16 C -0.393 4.393 17 H 0.090 0.910 18 C 0.043 3.957 19 N -0.860 5.860 20 Si 0.940 3.060 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.269 1.269 24 C -0.235 4.235 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.272 0.728 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.438 -17.475 -9.776 20.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.277 6.277 4 C 0.091 3.909 5 C -0.234 4.234 6 C -0.237 4.237 7 C 0.303 3.697 8 O -0.341 6.341 9 O -0.206 6.206 10 C 0.081 3.919 11 C -0.229 4.229 12 C -0.082 4.082 13 C -0.207 4.207 14 C 0.111 3.889 15 O -0.072 6.072 16 C -0.469 4.469 17 H 0.107 0.893 18 C -0.162 4.162 19 N -0.494 5.494 20 Si 0.764 3.236 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.194 1.194 24 C -0.254 4.254 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.082 0.918 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.854 -16.592 -9.511 19.214 hybrid contribution -0.255 -0.711 0.774 1.081 sum -2.110 -17.303 -8.737 19.498 Atomic orbital electron populations 1.21737 0.93308 1.02183 1.03598 1.22620 0.95771 0.83499 1.00535 1.88073 1.17644 1.26825 1.95124 1.20715 0.83426 0.89012 0.97753 1.22413 1.03074 1.01233 0.96632 1.22439 1.03190 1.01226 0.96803 1.23207 0.81211 0.91195 0.74059 1.90747 1.50231 1.51672 1.41403 1.84461 1.27115 1.25959 1.83084 1.18238 0.99527 0.80103 0.94034 1.20425 1.10210 0.94591 0.97695 1.20489 0.98255 0.92991 0.96496 1.20336 1.06618 1.00613 0.93101 1.19105 0.91779 0.89662 0.88374 1.83993 1.71555 1.34793 1.16899 1.21265 1.44757 0.93690 0.87209 0.89284 1.25275 0.96824 0.96316 0.97808 1.70020 1.44494 1.09861 1.25010 0.85799 0.79492 0.78977 0.79353 1.19395 1.20079 1.19365 1.21199 1.09956 0.95721 0.98560 0.91573 0.91699 0.90953 0.92763 0.92671 0.89669 0.90631 0.91008 0.90749 0.90566 0.89594 0.86636 0.85901 0.85830 0.91834 0.85155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.15 0.38 -0.92 16 2 C 0.05 0.50 5.86 37.15 0.22 0.71 16 3 O -0.36 -5.09 9.52 -55.18 -0.53 -5.62 16 4 C 0.13 1.76 1.07 -91.77 -0.10 1.66 16 5 C -0.18 -1.73 8.18 37.16 0.30 -1.42 16 6 C -0.18 -1.97 8.18 37.16 0.30 -1.67 16 7 C 0.46 8.40 6.39 36.01 0.23 8.63 16 8 O -0.46 -10.31 15.82 -25.48 -0.40 -10.71 16 9 O -0.29 -5.30 9.85 -23.61 -0.23 -5.54 16 10 C 0.12 2.53 5.34 -39.24 -0.21 2.32 16 11 C -0.21 -3.91 9.99 -39.38 -0.39 -4.30 16 12 C -0.06 -1.16 10.03 -39.63 -0.40 -1.56 16 13 C -0.19 -4.02 9.99 -39.37 -0.39 -4.41 16 14 C 0.17 4.16 6.64 -39.13 -0.26 3.90 16 15 O -0.17 -4.95 9.76 0.06 0.00 -4.95 16 16 C -0.39 -11.34 9.49 30.89 0.29 -11.05 16 17 H 0.09 2.43 5.21 -52.49 -0.27 2.16 16 18 C 0.04 1.20 5.49 -17.52 -0.10 1.10 16 19 N -0.86 -25.42 13.67 55.48 0.76 -24.66 16 20 Si 0.94 20.99 29.55 -169.99 -5.02 15.97 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 C -0.23 -5.58 8.30 -39.25 -0.33 -5.91 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.42 6.42 -51.93 -0.33 0.08 16 29 H 0.06 0.45 6.42 -51.93 -0.33 0.12 16 30 H 0.08 0.77 8.11 -51.92 -0.42 0.35 16 31 H 0.07 0.54 6.54 -51.93 -0.34 0.20 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 34 H 0.08 0.61 6.54 -51.93 -0.34 0.27 16 35 H 0.09 0.88 8.11 -51.93 -0.42 0.46 16 36 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 37 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.13 3.20 5.64 -52.48 -0.30 2.91 16 LS Contribution 340.91 15.07 5.14 5.14 Total: -1.00 -34.15 340.91 -6.01 -40.16 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -5.28 Total: 3.12 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -0.44 Total: -12.90 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.76 Total: -24.66 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -1.16 Total: -26.82 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.15 -6.01 -40.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870434752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.215 kcal (2) G-P(sol) polarization free energy of solvation -34.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds