Wall clock time and date at job start Tue Mar 31 2020 07:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09002 * 109.74965 * 2 1 4 4 C 1.50935 * 109.75788 * 239.24689 * 2 1 3 5 5 C 1.34094 * 128.19907 * 44.74266 * 4 2 1 6 6 C 1.41145 * 107.33823 * 180.15880 * 5 4 2 7 7 C 1.35184 * 107.49085 * 359.94953 * 6 5 4 8 8 Cl 1.73593 * 125.92828 * 179.90752 * 7 6 5 9 9 N 1.35722 * 108.14828 * 359.92888 * 7 6 5 10 10 C 1.46808 * 128.05946 * 180.24577 * 9 7 6 11 11 C 1.53361 * 108.21064 * 163.33178 * 10 9 7 12 12 N 1.46954 * 109.79013 * 50.21860 * 11 10 9 13 13 C 1.46897 * 110.99626 * 164.59169 * 12 11 10 14 14 C 1.52993 * 109.47269 * 307.96854 * 13 12 11 15 15 C 1.50695 * 115.55272 * 304.97807 * 14 13 12 16 16 H 1.08002 * 119.99604 * 114.08826 * 15 14 13 17 17 C 1.37872 * 120.00113 * 294.09317 * 15 14 13 18 18 N 1.31519 * 120.00189 * 170.72042 * 17 15 14 19 19 Si 1.86801 * 120.00234 * 350.71556 * 17 15 14 20 20 H 1.48506 * 109.46746 * 94.41116 * 19 17 15 21 21 H 1.48491 * 109.47313 * 214.41531 * 19 17 15 22 22 H 1.48497 * 109.47005 * 334.41935 * 19 17 15 23 23 C 1.53011 * 117.49688 * 159.30750 * 14 13 12 24 24 C 1.53005 * 117.49678 * 90.65425 * 14 13 12 25 25 H 1.08996 * 109.47496 * 296.96536 * 1 2 3 26 26 H 1.09004 * 109.47291 * 56.96786 * 1 2 3 27 27 H 1.09005 * 109.47351 * 176.96470 * 1 2 3 28 28 H 1.07993 * 126.32877 * 0.17919 * 5 4 2 29 29 H 1.07997 * 126.25366 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.71608 * 43.65299 * 10 9 7 31 31 H 1.09008 * 109.71150 * 283.01384 * 10 9 7 32 32 H 1.08997 * 109.41801 * 290.12029 * 11 10 9 33 33 H 1.08998 * 109.41903 * 170.31160 * 11 10 9 34 34 H 1.09003 * 109.47331 * 67.97588 * 13 12 11 35 35 H 1.09008 * 109.47143 * 187.96810 * 13 12 11 36 36 H 0.96993 * 120.00258 * 185.02283 * 18 17 15 37 37 H 1.08999 * 117.49902 * 0.02562 * 23 14 13 38 38 H 1.09001 * 117.49177 * 145.02137 * 23 14 13 39 39 H 1.09005 * 117.49333 * 214.97993 * 24 14 13 40 40 H 1.09005 * 117.49829 * 359.96771 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 6 2.0401 -0.7264 -1.2207 5 6 1.6160 -0.6173 -2.4882 6 6 2.3954 -1.4971 -3.2697 7 6 3.2699 -2.1103 -2.4410 8 17 4.4546 -3.2917 -2.9039 9 7 3.0608 -1.6423 -1.1843 10 6 3.7699 -2.0090 0.0477 11 6 3.4767 -0.9387 1.1061 12 7 2.0280 -0.7080 1.1925 13 6 1.6834 0.0214 2.4201 14 6 2.2968 -0.6920 3.6265 15 6 1.9386 -2.1486 3.7715 16 1 2.7022 -2.9053 3.6679 17 6 0.6361 -2.5152 4.0364 18 7 0.2855 -3.7816 3.9827 19 14 -0.6306 -1.2131 4.4716 20 1 -1.3572 -0.7997 3.2441 21 1 -1.5950 -1.7696 5.4540 22 1 0.0535 -0.0348 5.0622 23 6 2.4815 0.1212 4.9094 24 6 3.6986 -0.2622 4.0639 25 1 -0.3634 0.4660 0.9159 26 1 -0.3634 0.5602 -0.8616 27 1 -0.3634 -1.0263 -0.0544 28 1 0.8247 0.0251 -2.8450 29 1 2.3091 -1.6518 -4.3350 30 1 4.8420 -2.0525 -0.1442 31 1 3.4190 -2.9795 0.3989 32 1 3.9757 -0.0098 0.8301 33 1 3.8484 -1.2748 2.0741 34 1 2.0745 1.0372 2.3611 35 1 0.5995 0.0554 2.5305 36 1 -0.6443 -4.0327 4.0970 37 1 2.1657 1.1643 4.8939 38 1 2.3443 -0.3976 5.8582 39 1 4.3616 -1.0331 4.4568 40 1 4.1840 0.5285 3.4917 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878311094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:07 Heat of formation + Delta-G solvation = 87.209775 kcal Electronic energy + Delta-G solvation = -22502.564060 eV Core-core repulsion = 19345.328479 eV Total energy + Delta-G solvation = -3157.235580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.39851 -38.30588 -36.55320 -35.70923 -33.64283 -32.06528 -30.62352 -28.64338 -27.27957 -26.19264 -24.80735 -22.80968 -21.54172 -21.42881 -20.40830 -18.99809 -18.32116 -17.25158 -16.26215 -15.55948 -15.22057 -14.87016 -14.42918 -14.12715 -13.78503 -13.55747 -13.40826 -12.91022 -12.77057 -12.56815 -12.40094 -12.19736 -11.77834 -11.72857 -11.38398 -11.20590 -11.18722 -11.03019 -10.87076 -10.78328 -10.65207 -10.40252 -10.09097 -9.47744 -9.08138 -8.63785 -8.49073 -8.42465 -7.90815 -7.62609 -6.04355 -4.03643 1.92866 2.28217 3.05379 3.21169 3.28515 3.39940 3.43583 4.14154 4.45844 4.78439 4.88798 4.93805 5.19199 5.32227 5.36011 5.44695 5.49228 5.62972 5.71093 5.76826 5.83312 5.93626 6.00767 6.05050 6.08907 6.13781 6.17076 6.29966 6.34098 6.36343 6.53945 6.58177 6.66866 6.95491 6.98648 7.03956 7.26525 7.30280 7.51317 7.63567 7.81052 8.51203 8.94165 9.58725 11.06768 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.019241 B = 0.005410 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.855458 B = 5174.686739 C = 5379.331061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.145 3.855 3 H 0.052 0.948 4 C 0.056 3.944 5 C -0.191 4.191 6 C -0.178 4.178 7 C 0.059 3.941 8 Cl -0.036 7.036 9 N -0.428 5.428 10 C 0.107 3.893 11 C 0.046 3.954 12 N -0.505 5.505 13 C 0.094 3.906 14 C 0.003 3.997 15 C -0.467 4.467 16 H 0.073 0.927 17 C 0.088 3.912 18 N -0.896 5.896 19 Si 0.862 3.138 20 H -0.279 1.279 21 H -0.295 1.295 22 H -0.251 1.251 23 C -0.190 4.190 24 C -0.193 4.193 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.028 0.972 33 H 0.122 0.878 34 H 0.013 0.987 35 H 0.071 0.929 36 H 0.263 0.737 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.949 7.574 -10.369 13.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.037 3.963 3 H 0.069 0.931 4 C -0.058 4.058 5 C -0.215 4.215 6 C -0.205 4.205 7 C -0.079 4.079 8 Cl -0.007 7.007 9 N -0.105 5.105 10 C -0.014 4.014 11 C -0.082 4.082 12 N -0.229 5.229 13 C -0.033 4.033 14 C 0.002 3.998 15 C -0.505 4.505 16 H 0.091 0.909 17 C -0.115 4.115 18 N -0.533 5.533 19 Si 0.690 3.310 20 H -0.205 1.205 21 H -0.222 1.222 22 H -0.174 1.174 23 C -0.228 4.228 24 C -0.230 4.230 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.158 0.842 29 H 0.159 0.841 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.046 0.954 33 H 0.140 0.860 34 H 0.031 0.969 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.905 6.731 -9.983 13.002 hybrid contribution -0.232 1.117 0.120 1.147 sum 4.673 7.848 -9.863 13.443 Atomic orbital electron populations 1.21763 0.92697 1.03426 1.01431 1.20390 0.96176 0.93654 0.86130 0.93084 1.20383 0.92880 0.96423 0.96065 1.20271 1.04418 1.05314 0.91514 1.20610 0.99004 1.01936 0.98930 1.20611 1.00263 1.01004 0.86002 1.98345 1.56178 1.55687 1.90519 1.44258 1.28109 1.32175 1.06006 1.22284 0.96027 1.01525 0.81526 1.22456 0.89483 0.95874 1.00391 1.61903 1.12431 1.47909 1.00637 1.21843 1.00339 0.92074 0.89018 1.19459 0.94089 0.96036 0.90195 1.19998 0.95181 0.87221 1.48057 0.90860 1.24792 0.97992 0.94644 0.94071 1.69866 1.17456 1.16181 1.49815 0.87088 0.81763 0.83592 0.78550 1.20512 1.22155 1.17448 1.23075 1.03092 0.98896 0.97744 1.22925 0.92042 1.02486 1.05594 0.92067 0.92160 0.91098 0.84166 0.84110 0.89822 0.88382 0.95407 0.86027 0.96932 0.91046 0.92709 0.91474 0.89435 0.89600 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.91 37.15 0.33 -1.78 16 2 C 0.15 2.38 2.65 -68.50 -0.18 2.20 16 3 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 4 C 0.06 0.91 6.17 -81.54 -0.50 0.41 16 5 C -0.19 -2.82 10.32 -39.94 -0.41 -3.23 16 6 C -0.18 -2.59 10.85 -39.57 -0.43 -3.02 16 7 C 0.06 0.91 7.47 -16.92 -0.13 0.79 16 8 Cl -0.04 -0.48 29.13 -51.86 -1.51 -1.99 16 9 N -0.43 -7.09 3.16 -108.65 -0.34 -7.43 16 10 C 0.11 1.72 7.07 -3.69 -0.03 1.70 16 11 C 0.05 0.78 5.06 -3.61 -0.02 0.76 16 12 N -0.50 -9.49 4.22 -227.26 -0.96 -10.45 16 13 C 0.09 1.84 4.36 -3.83 -0.02 1.83 16 14 C 0.00 0.07 0.08 -155.66 -0.01 0.06 16 15 C -0.47 -12.09 8.75 -34.44 -0.30 -12.40 16 16 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 17 C 0.09 2.40 5.46 -17.82 -0.10 2.30 16 18 N -0.90 -26.54 13.95 55.43 0.77 -25.77 16 19 Si 0.86 20.57 25.18 -169.99 -4.28 16.29 16 20 H -0.28 -6.55 7.07 56.52 0.40 -6.15 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.25 -5.57 5.56 56.52 0.31 -5.25 16 23 C -0.19 -3.74 7.80 -26.69 -0.21 -3.95 16 24 C -0.19 -3.54 7.88 -26.69 -0.21 -3.75 16 25 H 0.06 0.97 6.57 -51.93 -0.34 0.63 16 26 H 0.06 0.76 7.95 -51.93 -0.41 0.34 16 27 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.14 1.73 7.96 -52.49 -0.42 1.32 16 29 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 32 H 0.03 0.44 8.07 -51.93 -0.42 0.02 16 33 H 0.12 2.19 4.72 -51.93 -0.25 1.94 16 34 H 0.01 0.22 8.07 -51.93 -0.42 -0.19 16 35 H 0.07 1.49 3.94 -51.92 -0.20 1.28 16 36 H 0.26 7.43 8.32 -40.82 -0.34 7.09 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 39 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 325.01 15.07 4.90 4.90 Total: -1.00 -28.58 325.01 -9.54 -38.12 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -5.91 Total: 4.40 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -2.21 Total: -18.07 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: -0.53 Total: -43.65 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.28 Total: 16.29 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.51 Total: -1.99 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.58 -9.54 -38.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878311094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.333 kcal (2) G-P(sol) polarization free energy of solvation -28.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds