Wall clock time and date at job start Tue Mar 31 2020 07:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09002 * 109.74965 * 2 1 4 4 C 1.50935 * 109.75788 * 239.24689 * 2 1 3 5 5 C 1.34094 * 128.19907 * 44.74266 * 4 2 1 6 6 C 1.41145 * 107.33823 * 180.15880 * 5 4 2 7 7 C 1.35184 * 107.49085 * 359.94953 * 6 5 4 8 8 Cl 1.73593 * 125.92828 * 179.90752 * 7 6 5 9 9 N 1.35722 * 108.14828 * 359.92888 * 7 6 5 10 10 C 1.46808 * 128.05946 * 180.24577 * 9 7 6 11 11 C 1.53361 * 108.21064 * 163.33178 * 10 9 7 12 12 N 1.46954 * 109.79013 * 50.21860 * 11 10 9 13 13 C 1.46897 * 110.99626 * 164.59169 * 12 11 10 14 14 C 1.52993 * 109.47269 * 307.96854 * 13 12 11 15 15 C 1.50695 * 115.55272 * 304.97807 * 14 13 12 16 16 H 1.08002 * 119.99604 * 114.08826 * 15 14 13 17 17 C 1.37872 * 120.00113 * 294.09317 * 15 14 13 18 18 N 1.31519 * 120.00189 * 170.72042 * 17 15 14 19 19 Si 1.86801 * 120.00234 * 350.71556 * 17 15 14 20 20 H 1.48506 * 109.46746 * 94.41116 * 19 17 15 21 21 H 1.48491 * 109.47313 * 214.41531 * 19 17 15 22 22 H 1.48497 * 109.47005 * 334.41935 * 19 17 15 23 23 C 1.53011 * 117.49688 * 159.30750 * 14 13 12 24 24 C 1.53005 * 117.49678 * 90.65425 * 14 13 12 25 25 H 1.08996 * 109.47496 * 296.96536 * 1 2 3 26 26 H 1.09004 * 109.47291 * 56.96786 * 1 2 3 27 27 H 1.09005 * 109.47351 * 176.96470 * 1 2 3 28 28 H 1.07993 * 126.32877 * 0.17919 * 5 4 2 29 29 H 1.07997 * 126.25366 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.71608 * 43.65299 * 10 9 7 31 31 H 1.09008 * 109.71150 * 283.01384 * 10 9 7 32 32 H 1.08997 * 109.41801 * 290.12029 * 11 10 9 33 33 H 1.08998 * 109.41903 * 170.31160 * 11 10 9 34 34 H 1.09003 * 109.47331 * 67.97588 * 13 12 11 35 35 H 1.09008 * 109.47143 * 187.96810 * 13 12 11 36 36 H 0.96993 * 120.00258 * 185.02283 * 18 17 15 37 37 H 1.08999 * 117.49902 * 0.02562 * 23 14 13 38 38 H 1.09001 * 117.49177 * 145.02137 * 23 14 13 39 39 H 1.09005 * 117.49333 * 214.97993 * 24 14 13 40 40 H 1.09005 * 117.49829 * 359.96771 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 6 2.0401 -0.7264 -1.2207 5 6 1.6160 -0.6173 -2.4882 6 6 2.3954 -1.4971 -3.2697 7 6 3.2699 -2.1103 -2.4410 8 17 4.4546 -3.2917 -2.9039 9 7 3.0608 -1.6423 -1.1843 10 6 3.7699 -2.0090 0.0477 11 6 3.4767 -0.9387 1.1061 12 7 2.0280 -0.7080 1.1925 13 6 1.6834 0.0214 2.4201 14 6 2.2968 -0.6920 3.6265 15 6 1.9386 -2.1486 3.7715 16 1 2.7022 -2.9053 3.6679 17 6 0.6361 -2.5152 4.0364 18 7 0.2855 -3.7816 3.9827 19 14 -0.6306 -1.2131 4.4716 20 1 -1.3572 -0.7997 3.2441 21 1 -1.5950 -1.7696 5.4540 22 1 0.0535 -0.0348 5.0622 23 6 2.4815 0.1212 4.9094 24 6 3.6986 -0.2622 4.0639 25 1 -0.3634 0.4660 0.9159 26 1 -0.3634 0.5602 -0.8616 27 1 -0.3634 -1.0263 -0.0544 28 1 0.8247 0.0251 -2.8450 29 1 2.3091 -1.6518 -4.3350 30 1 4.8420 -2.0525 -0.1442 31 1 3.4190 -2.9795 0.3989 32 1 3.9757 -0.0098 0.8301 33 1 3.8484 -1.2748 2.0741 34 1 2.0745 1.0372 2.3611 35 1 0.5995 0.0554 2.5305 36 1 -0.6443 -4.0327 4.0970 37 1 2.1657 1.1643 4.8939 38 1 2.3443 -0.3976 5.8582 39 1 4.3616 -1.0331 4.4568 40 1 4.1840 0.5285 3.4917 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878311094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:06 Heat of formation + Delta-G solvation = 70.866170 kcal Electronic energy + Delta-G solvation = -22503.272772 eV Core-core repulsion = 19345.328479 eV Total energy + Delta-G solvation = -3157.944292 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.58448 -39.76491 -37.71405 -37.11154 -34.87100 -34.12909 -31.90512 -29.91175 -28.49074 -27.95305 -26.42532 -24.13244 -22.96549 -22.78281 -21.56773 -20.74989 -19.55648 -18.61627 -17.96475 -16.97106 -16.63801 -16.44906 -15.71982 -15.60413 -15.07992 -15.06131 -14.81745 -14.54744 -14.03957 -13.90624 -13.80864 -13.50850 -13.15489 -13.00845 -12.79356 -12.70107 -12.60510 -12.42705 -12.23188 -12.14299 -12.10639 -11.94180 -11.72921 -11.31289 -10.84522 -10.48348 -10.20002 -9.66792 -9.19234 -8.84676 -8.15413 -6.16403 0.79710 1.10035 1.37896 1.44227 1.54601 1.92627 2.01339 2.46427 2.79059 3.16849 3.39181 3.59877 3.70531 3.95235 4.05966 4.21494 4.25495 4.29918 4.34840 4.44245 4.51393 4.57681 4.62275 4.67350 4.78231 4.86715 4.88625 4.91636 5.02459 5.11715 5.16920 5.21618 5.32494 5.41799 5.52735 5.79195 5.84749 6.05932 6.10789 6.22510 6.33097 6.42728 6.85033 7.49074 8.99572 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.019241 B = 0.005410 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.855458 B = 5174.686739 C = 5379.331061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.148 3.852 3 H 0.071 0.929 4 C 0.031 3.969 5 C -0.186 4.186 6 C -0.179 4.179 7 C 0.042 3.958 8 Cl -0.025 7.025 9 N -0.440 5.440 10 C 0.112 3.888 11 C 0.052 3.948 12 N -0.535 5.535 13 C 0.102 3.898 14 C -0.023 4.023 15 C -0.450 4.450 16 H 0.028 0.972 17 C 0.028 3.972 18 N -0.954 5.954 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.308 1.308 22 H -0.220 1.220 23 C -0.186 4.186 24 C -0.169 4.169 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.040 0.960 28 H 0.166 0.834 29 H 0.164 0.836 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.105 0.895 34 H 0.041 0.959 35 H 0.057 0.943 36 H 0.259 0.741 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.374 10.831 -11.563 16.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.039 3.961 3 H 0.088 0.912 4 C -0.081 4.081 5 C -0.210 4.210 6 C -0.205 4.205 7 C -0.095 4.095 8 Cl 0.003 6.997 9 N -0.118 5.118 10 C -0.010 4.010 11 C -0.076 4.076 12 N -0.260 5.260 13 C -0.025 4.025 14 C -0.024 4.024 15 C -0.488 4.488 16 H 0.046 0.954 17 C -0.168 4.168 18 N -0.594 5.594 19 Si 0.745 3.255 20 H -0.200 1.200 21 H -0.236 1.236 22 H -0.142 1.142 23 C -0.224 4.224 24 C -0.206 4.206 25 H 0.075 0.925 26 H 0.111 0.889 27 H 0.059 0.941 28 H 0.183 0.817 29 H 0.181 0.819 30 H 0.124 0.876 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.123 0.877 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.357 10.021 -11.183 15.943 hybrid contribution -0.249 0.015 0.427 0.495 sum 5.107 10.036 -10.756 15.572 Atomic orbital electron populations 1.21752 0.92473 1.01965 1.02713 1.20446 0.96310 0.94285 0.85044 0.91159 1.20633 0.93487 0.97203 0.96776 1.20632 1.04423 1.05087 0.90849 1.20987 0.98252 1.01267 1.00010 1.20959 1.01071 1.01569 0.85947 1.98344 1.55726 1.55253 1.90341 1.44336 1.28583 1.32723 1.06181 1.22159 0.97186 0.99833 0.81791 1.22351 0.88794 0.96685 0.99736 1.61816 1.13611 1.49154 1.01416 1.21665 0.99355 0.93172 0.88307 1.19339 0.97233 0.93607 0.92217 1.20145 0.93723 0.89370 1.45573 0.95423 1.25571 1.00385 0.96290 0.94589 1.70038 1.17553 1.18701 1.53153 0.86182 0.79166 0.81988 0.78162 1.19955 1.23615 1.14172 1.23099 1.03520 0.99739 0.96076 1.22934 0.90828 1.02550 1.04248 0.92501 0.88896 0.94082 0.81700 0.81854 0.87606 0.91515 0.93425 0.87651 0.94058 0.92486 0.93261 0.88696 0.90813 0.90372 0.88118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.84 8.91 71.98 0.64 -3.19 16 2 C 0.15 4.49 2.65 44.15 0.12 4.61 16 3 H 0.07 1.87 8.11 -2.39 -0.02 1.85 16 4 C 0.03 0.96 6.17 40.85 0.25 1.22 16 5 C -0.19 -4.97 10.32 22.04 0.23 -4.74 16 6 C -0.18 -4.77 10.85 22.28 0.24 -4.53 16 7 C 0.04 1.24 7.47 83.39 0.62 1.86 16 8 Cl -0.02 -0.65 29.13 -2.72 -0.08 -0.73 16 9 N -0.44 -14.09 3.16 -497.64 -1.57 -15.66 16 10 C 0.11 3.57 7.07 86.44 0.61 4.18 16 11 C 0.05 1.71 5.06 86.41 0.44 2.14 16 12 N -0.54 -19.45 4.22 -872.92 -3.68 -23.13 16 13 C 0.10 3.74 4.36 86.30 0.38 4.11 16 14 C -0.02 -0.94 0.08 -52.93 0.00 -0.94 16 15 C -0.45 -23.94 8.75 25.60 0.22 -23.71 16 16 H 0.03 1.67 8.06 -2.91 -0.02 1.65 16 17 C 0.03 1.59 5.46 84.65 0.46 2.05 16 18 N -0.95 -59.38 13.95 21.45 0.30 -59.08 16 19 Si 0.92 42.78 25.18 68.60 1.73 44.51 16 20 H -0.27 -12.39 7.07 99.48 0.70 -11.68 16 21 H -0.31 -14.91 7.11 99.48 0.71 -14.21 16 22 H -0.22 -8.97 5.56 99.48 0.55 -8.42 16 23 C -0.19 -6.77 7.80 30.62 0.24 -6.53 16 24 C -0.17 -5.74 7.88 30.62 0.24 -5.50 16 25 H 0.06 1.69 6.57 -2.39 -0.02 1.68 16 26 H 0.09 2.04 7.95 -2.38 -0.02 2.02 16 27 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.17 3.45 7.96 -2.91 -0.02 3.43 16 29 H 0.16 3.49 8.06 -2.91 -0.02 3.46 16 30 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 31 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 32 H 0.05 1.36 8.07 -2.39 -0.02 1.34 16 33 H 0.11 3.74 4.72 -2.39 -0.01 3.72 16 34 H 0.04 1.28 8.07 -2.39 -0.02 1.26 16 35 H 0.06 2.24 3.94 -2.38 -0.01 2.23 16 36 H 0.26 15.41 8.32 -92.71 -0.77 14.64 16 37 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 38 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 39 H 0.08 2.78 8.14 -2.38 -0.02 2.76 16 40 H 0.10 2.82 8.14 -2.38 -0.02 2.80 16 Total: -1.00 -64.28 325.01 2.26 -62.03 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.87 Total: 21.04 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: 4.69 Total: -28.97 kcal Atomic # 7 Polarization: -92.92 SS G_CDS: -4.95 Total: -97.87 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.73 Total: 44.51 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.73 kcal Total: -64.28 2.26 -62.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878311094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.891 kcal (2) G-P(sol) polarization free energy of solvation -64.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds