Wall clock time and date at job start Tue Mar 31 2020 07:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47215 * 2 1 4 4 C 1.50699 * 109.47324 * 239.99831 * 2 1 3 5 5 H 1.08004 * 120.00222 * 274.99740 * 4 2 1 6 6 C 1.37874 * 119.99960 * 95.00163 * 4 2 1 7 7 N 1.31516 * 120.00018 * 184.91081 * 6 4 2 8 8 Si 1.86797 * 120.00171 * 4.91707 * 6 4 2 9 9 H 1.48496 * 109.47582 * 84.83349 * 8 6 4 10 10 H 1.48497 * 109.47404 * 204.83555 * 8 6 4 11 11 H 1.48505 * 109.47083 * 324.83450 * 8 6 4 12 12 N 1.46498 * 109.46969 * 119.99691 * 2 1 3 13 13 N 1.40104 * 120.00324 * 270.00161 * 12 2 1 14 14 C 1.29915 * 120.00340 * 180.02562 * 13 12 2 15 15 C 1.46941 * 120.00193 * 179.97438 * 14 13 12 16 16 C 1.38154 * 126.52148 * 179.97438 * 15 14 13 17 17 C 1.39060 * 108.06583 * 179.87053 * 16 15 14 18 18 N 1.31581 * 108.22446 * 359.94028 * 17 16 15 19 19 N 1.36483 * 126.51882 * 0.02562 * 15 14 13 20 20 C 1.46497 * 126.14902 * 0.04799 * 19 15 14 21 21 C 1.50733 * 127.75982 * 180.20230 * 17 16 15 22 22 C 1.52742 * 110.93052 * 340.47626 * 21 17 16 23 23 S 1.81800 * 108.98006 * 52.67929 * 22 21 17 24 24 C 1.51109 * 125.07017 * 359.76293 * 16 15 14 25 25 H 1.08999 * 109.47631 * 295.02573 * 1 2 3 26 26 H 1.09004 * 109.47250 * 55.03224 * 1 2 3 27 27 H 1.09001 * 109.46981 * 175.02468 * 1 2 3 28 28 H 0.96997 * 120.00082 * 179.97438 * 7 6 4 29 29 H 0.97007 * 120.00322 * 90.00814 * 12 2 1 30 30 H 1.08002 * 120.00170 * 359.97438 * 14 13 12 31 31 H 1.09006 * 109.46629 * 90.00493 * 20 19 15 32 32 H 1.08998 * 109.47228 * 210.00646 * 20 19 15 33 33 H 1.08995 * 109.47399 * 330.00598 * 20 19 15 34 34 H 1.09002 * 109.17739 * 100.84409 * 21 17 16 35 35 H 1.09000 * 109.18614 * 220.09682 * 21 17 16 36 36 H 1.09000 * 109.55114 * 172.53253 * 22 21 17 37 37 H 1.08999 * 109.54718 * 292.73119 * 22 21 17 38 38 H 1.08997 * 109.70365 * 42.96881 * 24 16 15 39 39 H 1.09003 * 109.71732 * 282.41159 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1355 -1.7855 -1.2290 6 6 2.3603 0.0120 -2.3580 7 7 2.7061 -0.6132 -3.4621 8 14 2.3136 1.8790 -2.3174 9 1 3.5991 2.3949 -1.7822 10 1 2.1058 2.3990 -3.6928 11 1 1.1986 2.3275 -1.4450 12 7 2.0182 -0.6905 1.1962 13 7 2.2517 0.0300 2.3749 14 6 2.6852 -0.5823 3.4355 15 6 2.9306 0.1735 4.6715 16 6 3.3882 -0.3376 5.8707 17 6 3.4843 0.7118 6.7781 18 7 3.1067 1.8165 6.1712 19 7 2.7489 1.5139 4.8535 20 6 2.2705 2.4656 3.8477 21 6 3.9403 0.6519 8.2135 22 6 3.8539 -0.7739 8.7545 23 16 4.7410 -1.8893 7.6257 24 6 3.7172 -1.7901 6.1263 25 1 -0.3634 0.4347 0.9311 26 1 -0.3634 0.5890 -0.8422 27 1 -0.3633 -1.0238 -0.0891 28 1 2.9365 -0.1050 -4.2555 29 1 2.1800 -1.6467 1.1723 30 1 2.8652 -1.6469 3.4089 31 1 1.1835 2.5299 3.8964 32 1 2.7017 3.4475 4.0424 33 1 2.5704 2.1274 2.8558 34 1 4.9725 0.9968 8.2760 35 1 3.3086 1.3032 8.8176 36 1 4.3103 -0.8171 9.7434 37 1 2.8088 -1.0759 8.8215 38 1 4.2677 -2.1970 5.2781 39 1 2.7968 -2.3556 6.2720 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884442222.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:27 Heat of formation + Delta-G solvation = 111.833029 kcal Electronic energy + Delta-G solvation = -20898.333645 eV Core-core repulsion = 17776.502267 eV Total energy + Delta-G solvation = -3121.831378 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.11675 -36.87367 -35.19524 -34.14561 -32.45184 -31.96934 -31.16747 -28.74107 -27.19966 -25.67215 -25.38874 -23.40206 -22.83961 -20.44941 -19.62280 -19.39860 -17.52111 -16.41875 -16.23113 -15.90049 -15.67838 -15.18246 -14.87168 -14.12353 -14.00559 -13.80520 -13.53035 -13.38754 -13.02771 -12.83913 -12.69163 -12.67785 -12.40801 -12.38319 -11.78687 -11.47113 -11.33696 -11.20908 -10.92968 -10.59400 -10.56575 -10.10406 -10.06910 -9.81728 -9.36256 -9.16108 -8.82181 -8.37873 -7.79992 -7.14094 -6.36629 -4.41145 1.33559 1.64695 2.31701 2.49746 2.53465 3.10314 3.20527 3.21725 3.21950 3.35649 4.17173 4.33305 4.57388 4.80260 4.88205 5.03155 5.06034 5.14703 5.22337 5.26275 5.36466 5.39498 5.49742 5.61637 5.68968 5.71438 5.80235 6.05251 6.09826 6.36382 6.46252 6.51621 6.60974 6.81972 7.04233 7.09806 7.35756 7.75307 7.83220 8.20375 8.65253 8.88801 9.23051 10.75231 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.026277 B = 0.003388 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.296292 B = 8262.156340 C = 8808.754717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.263 3.737 3 H 0.044 0.956 4 C -0.531 4.531 5 H 0.079 0.921 6 C 0.082 3.918 7 N -0.884 5.884 8 Si 0.877 3.123 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.262 1.262 12 N -0.607 5.607 13 N -0.197 5.197 14 C 0.005 3.995 15 C 0.180 3.820 16 C -0.243 4.243 17 C 0.079 3.921 18 N -0.302 5.302 19 N -0.350 5.350 20 C 0.100 3.900 21 C -0.036 4.036 22 C -0.077 4.077 23 S -0.258 6.258 24 C 0.007 3.993 25 H 0.027 0.973 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.270 0.730 29 H 0.377 0.623 30 H 0.126 0.874 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.197 1.403 20.436 20.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.161 3.839 3 H 0.061 0.939 4 C -0.570 4.570 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.520 5.520 8 Si 0.703 3.297 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.186 1.186 12 N -0.345 5.345 13 N -0.013 5.013 14 C -0.204 4.204 15 C 0.048 3.952 16 C -0.258 4.258 17 C -0.085 4.085 18 N -0.126 5.126 19 N -0.132 5.132 20 C -0.041 4.041 21 C -0.076 4.076 22 C -0.226 4.226 23 S -0.031 6.031 24 C -0.142 4.142 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.215 0.785 30 H 0.143 0.857 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.127 0.873 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.130 0.870 37 H 0.106 0.894 38 H 0.126 0.874 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.617 3.156 19.863 20.122 hybrid contribution -0.733 -0.369 -0.518 0.971 sum -0.116 2.787 19.345 19.545 Atomic orbital electron populations 1.22347 0.98847 1.00902 0.98978 1.18993 0.90231 0.93793 0.80904 0.93851 1.21000 1.45601 0.95829 0.94582 0.90334 1.24952 0.93512 0.98753 0.95118 1.69868 1.44054 1.36362 1.01740 0.86866 0.79482 0.85627 0.77690 1.19796 1.20988 1.18618 1.49357 1.71039 1.08331 1.05755 1.73858 1.04338 1.28622 0.94433 1.22662 1.10562 0.97136 0.90040 1.19237 0.99192 0.83656 0.93116 1.19597 1.17506 0.95481 0.93240 1.21767 0.99906 0.90471 0.96309 1.77347 1.22871 1.22463 0.89941 1.48610 1.49640 1.05777 1.09153 1.22122 1.00059 0.91749 0.90135 1.19959 1.02728 0.96185 0.88770 1.23280 1.03393 0.95615 1.00326 1.86845 1.42380 1.61392 1.12466 1.21634 1.01089 0.94044 0.97388 0.95430 0.92760 0.93295 0.92020 0.78546 0.85704 0.90791 0.89925 0.87335 0.89040 0.89383 0.87030 0.89445 0.87375 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.50 37.15 0.35 -2.66 16 2 C 0.26 5.76 2.89 -69.09 -0.20 5.56 16 3 H 0.04 0.99 5.29 -51.93 -0.27 0.71 16 4 C -0.53 -13.66 9.08 -34.44 -0.31 -13.97 16 5 H 0.08 2.18 8.06 -52.48 -0.42 1.75 16 6 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 7 N -0.88 -25.22 13.96 55.43 0.77 -24.44 16 8 Si 0.88 20.04 26.99 -169.99 -4.59 15.45 16 9 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.26 -5.65 6.82 56.52 0.39 -5.27 16 12 N -0.61 -11.74 6.10 -5.89 -0.04 -11.77 16 13 N -0.20 -3.45 8.88 32.06 0.28 -3.17 16 14 C 0.00 0.07 10.70 -14.84 -0.16 -0.09 16 15 C 0.18 2.73 6.95 -82.30 -0.57 2.16 16 16 C -0.24 -3.32 5.92 -104.15 -0.62 -3.94 16 17 C 0.08 1.07 6.84 -82.38 -0.56 0.51 16 18 N -0.30 -4.66 12.55 33.64 0.42 -4.24 16 19 N -0.35 -5.41 4.06 -64.05 -0.26 -5.67 16 20 C 0.10 1.36 10.91 59.85 0.65 2.01 16 21 C -0.04 -0.35 6.06 -28.00 -0.17 -0.52 16 22 C -0.08 -0.65 6.45 37.03 0.24 -0.41 16 23 S -0.26 -2.80 22.26 -107.50 -2.39 -5.20 16 24 C 0.01 0.08 6.41 36.21 0.23 0.32 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.38 6.86 8.60 -182.59 -1.57 5.28 16 30 H 0.13 1.64 7.94 -52.49 -0.42 1.23 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.11 1.61 6.17 -51.93 -0.32 1.29 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 336.93 15.07 5.08 5.08 Total: -1.00 -29.37 336.93 -8.74 -38.11 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -6.81 Total: 4.79 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -1.21 Total: -8.94 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 1.18 Total: -49.29 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.59 Total: 15.45 kcal Atomic # 16 Polarization: -2.80 SS G_CDS: -2.39 Total: -5.20 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.37 -8.74 -38.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884442222.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.945 kcal (2) G-P(sol) polarization free energy of solvation -29.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds