Wall clock time and date at job start Tue Mar 31 2020 07:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47215 * 2 1 4 4 C 1.50699 * 109.47324 * 239.99831 * 2 1 3 5 5 H 1.08004 * 120.00222 * 274.99740 * 4 2 1 6 6 C 1.37874 * 119.99960 * 95.00163 * 4 2 1 7 7 N 1.31516 * 120.00018 * 184.91081 * 6 4 2 8 8 Si 1.86797 * 120.00171 * 4.91707 * 6 4 2 9 9 H 1.48496 * 109.47582 * 84.83349 * 8 6 4 10 10 H 1.48497 * 109.47404 * 204.83555 * 8 6 4 11 11 H 1.48505 * 109.47083 * 324.83450 * 8 6 4 12 12 N 1.46498 * 109.46969 * 119.99691 * 2 1 3 13 13 N 1.40104 * 120.00324 * 270.00161 * 12 2 1 14 14 C 1.29915 * 120.00340 * 180.02562 * 13 12 2 15 15 C 1.46941 * 120.00193 * 179.97438 * 14 13 12 16 16 C 1.38154 * 126.52148 * 179.97438 * 15 14 13 17 17 C 1.39060 * 108.06583 * 179.87053 * 16 15 14 18 18 N 1.31581 * 108.22446 * 359.94028 * 17 16 15 19 19 N 1.36483 * 126.51882 * 0.02562 * 15 14 13 20 20 C 1.46497 * 126.14902 * 0.04799 * 19 15 14 21 21 C 1.50733 * 127.75982 * 180.20230 * 17 16 15 22 22 C 1.52742 * 110.93052 * 340.47626 * 21 17 16 23 23 S 1.81800 * 108.98006 * 52.67929 * 22 21 17 24 24 C 1.51109 * 125.07017 * 359.76293 * 16 15 14 25 25 H 1.08999 * 109.47631 * 295.02573 * 1 2 3 26 26 H 1.09004 * 109.47250 * 55.03224 * 1 2 3 27 27 H 1.09001 * 109.46981 * 175.02468 * 1 2 3 28 28 H 0.96997 * 120.00082 * 179.97438 * 7 6 4 29 29 H 0.97007 * 120.00322 * 90.00814 * 12 2 1 30 30 H 1.08002 * 120.00170 * 359.97438 * 14 13 12 31 31 H 1.09006 * 109.46629 * 90.00493 * 20 19 15 32 32 H 1.08998 * 109.47228 * 210.00646 * 20 19 15 33 33 H 1.08995 * 109.47399 * 330.00598 * 20 19 15 34 34 H 1.09002 * 109.17739 * 100.84409 * 21 17 16 35 35 H 1.09000 * 109.18614 * 220.09682 * 21 17 16 36 36 H 1.09000 * 109.55114 * 172.53253 * 22 21 17 37 37 H 1.08999 * 109.54718 * 292.73119 * 22 21 17 38 38 H 1.08997 * 109.70365 * 42.96881 * 24 16 15 39 39 H 1.09003 * 109.71732 * 282.41159 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1355 -1.7855 -1.2290 6 6 2.3603 0.0120 -2.3580 7 7 2.7061 -0.6132 -3.4621 8 14 2.3136 1.8790 -2.3174 9 1 3.5991 2.3949 -1.7822 10 1 2.1058 2.3990 -3.6928 11 1 1.1986 2.3275 -1.4450 12 7 2.0182 -0.6905 1.1962 13 7 2.2517 0.0300 2.3749 14 6 2.6852 -0.5823 3.4355 15 6 2.9306 0.1735 4.6715 16 6 3.3882 -0.3376 5.8707 17 6 3.4843 0.7118 6.7781 18 7 3.1067 1.8165 6.1712 19 7 2.7489 1.5139 4.8535 20 6 2.2705 2.4656 3.8477 21 6 3.9403 0.6519 8.2135 22 6 3.8539 -0.7739 8.7545 23 16 4.7410 -1.8893 7.6257 24 6 3.7172 -1.7901 6.1263 25 1 -0.3634 0.4347 0.9311 26 1 -0.3634 0.5890 -0.8422 27 1 -0.3633 -1.0238 -0.0891 28 1 2.9365 -0.1050 -4.2555 29 1 2.1800 -1.6467 1.1723 30 1 2.8652 -1.6469 3.4089 31 1 1.1835 2.5299 3.8964 32 1 2.7017 3.4475 4.0424 33 1 2.5704 2.1274 2.8558 34 1 4.9725 0.9968 8.2760 35 1 3.3086 1.3032 8.8176 36 1 4.3103 -0.8171 9.7434 37 1 2.8088 -1.0759 8.8215 38 1 4.2677 -2.1970 5.2781 39 1 2.7968 -2.3556 6.2720 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884442222.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:26 Heat of formation + Delta-G solvation = 93.863004 kcal Electronic energy + Delta-G solvation = -20899.112884 eV Core-core repulsion = 17776.502267 eV Total energy + Delta-G solvation = -3122.610617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.21142 -38.30125 -36.30334 -35.62240 -33.96456 -33.15544 -32.36651 -30.01402 -28.38875 -27.31327 -26.60583 -24.25878 -24.12629 -22.10056 -20.70347 -20.61225 -19.22435 -17.68521 -17.34636 -17.22183 -16.79045 -16.54917 -15.87351 -15.46288 -15.04071 -14.90531 -14.64308 -14.58011 -14.52253 -14.27546 -14.03052 -13.72147 -13.56637 -13.45565 -13.00182 -12.96238 -12.74378 -12.54462 -12.33656 -12.19600 -11.86994 -11.62928 -11.32178 -11.03257 -10.91739 -10.82490 -10.31440 -9.48887 -8.63332 -8.53085 -8.39850 -6.48080 0.13764 0.85247 1.31606 1.34738 1.38257 1.43977 1.45039 1.59331 1.92939 2.03671 2.26796 3.01042 3.39833 3.62945 3.87056 4.00033 4.13410 4.22272 4.31777 4.34466 4.36712 4.42557 4.50163 4.58105 4.66116 4.77947 4.81443 4.81981 4.85621 4.95915 5.02870 5.04361 5.29787 5.46393 5.53338 5.60868 5.92600 6.06558 6.41458 6.60866 6.65908 7.20199 7.50559 8.75701 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.026277 B = 0.003388 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.296292 B = 8262.156340 C = 8808.754717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.273 3.727 3 H 0.038 0.962 4 C -0.531 4.531 5 H 0.044 0.956 6 C 0.027 3.973 7 N -0.935 5.935 8 Si 0.936 3.064 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.239 1.239 12 N -0.625 5.625 13 N -0.220 5.220 14 C 0.037 3.963 15 C 0.151 3.849 16 C -0.233 4.233 17 C 0.073 3.927 18 N -0.320 5.320 19 N -0.360 5.360 20 C 0.099 3.901 21 C -0.035 4.035 22 C -0.066 4.066 23 S -0.283 6.283 24 C 0.007 3.993 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.271 0.729 29 H 0.379 0.621 30 H 0.147 0.853 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.139 0.861 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.035 2.328 23.449 23.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.169 3.831 3 H 0.056 0.944 4 C -0.570 4.570 5 H 0.062 0.938 6 C -0.174 4.174 7 N -0.574 5.574 8 Si 0.759 3.241 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.162 1.162 12 N -0.363 5.363 13 N -0.034 5.034 14 C -0.174 4.174 15 C 0.020 3.980 16 C -0.249 4.249 17 C -0.091 4.091 18 N -0.145 5.145 19 N -0.142 5.142 20 C -0.041 4.041 21 C -0.076 4.076 22 C -0.215 4.215 23 S -0.055 6.055 24 C -0.142 4.142 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.217 0.783 30 H 0.164 0.836 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.124 0.876 36 H 0.157 0.843 37 H 0.114 0.886 38 H 0.129 0.871 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.372 4.078 22.895 23.259 hybrid contribution -0.578 -0.739 -1.159 1.491 sum -0.206 3.339 21.736 21.992 Atomic orbital electron populations 1.22231 0.97370 1.00979 0.99820 1.18676 0.91184 0.92871 0.80386 0.94417 1.21239 1.44802 0.94550 0.96443 0.93789 1.25765 0.93434 1.03472 0.94690 1.70004 1.46461 1.38238 1.02654 0.85917 0.80108 0.79987 0.78044 1.19771 1.20807 1.16240 1.48792 1.73175 1.08187 1.06118 1.73892 1.06732 1.28382 0.94345 1.23058 1.06766 0.98198 0.89331 1.19407 1.01069 0.84033 0.93541 1.19968 1.15615 0.96755 0.92576 1.22431 0.98954 0.89787 0.97889 1.77320 1.23482 1.23582 0.90118 1.48820 1.49844 1.06077 1.09491 1.22162 1.00664 0.92139 0.89158 1.20113 1.03246 0.97503 0.86692 1.23375 1.03749 0.93757 1.00575 1.86982 1.43152 1.62471 1.12931 1.21691 1.01918 0.92598 0.97974 0.93574 0.92959 0.93481 0.92016 0.78336 0.83583 0.89960 0.88458 0.88727 0.88466 0.87614 0.84275 0.88649 0.87083 0.87887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.62 9.50 71.98 0.68 -4.94 16 2 C 0.27 11.86 2.89 44.24 0.13 11.99 16 3 H 0.04 1.68 5.29 -2.39 -0.01 1.67 16 4 C -0.53 -28.00 9.08 25.60 0.23 -27.76 16 5 H 0.04 2.55 8.06 -2.91 -0.02 2.53 16 6 C 0.03 1.45 5.47 84.65 0.46 1.91 16 7 N -0.94 -55.08 13.96 21.45 0.30 -54.78 16 8 Si 0.94 41.38 26.99 68.60 1.85 43.24 16 9 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.24 -9.61 6.82 99.48 0.68 -8.93 16 12 N -0.63 -23.97 6.10 -172.53 -1.05 -25.03 16 13 N -0.22 -7.51 8.88 -52.50 -0.47 -7.98 16 14 C 0.04 1.06 10.70 87.26 0.93 2.00 16 15 C 0.15 4.32 6.95 40.68 0.28 4.61 16 16 C -0.23 -5.87 5.92 -19.56 -0.12 -5.99 16 17 C 0.07 1.80 6.84 42.80 0.29 2.09 16 18 N -0.32 -9.27 12.55 -47.50 -0.60 -9.86 16 19 N -0.36 -10.57 4.06 -356.56 -1.45 -12.02 16 20 C 0.10 2.56 10.91 127.77 1.39 3.95 16 21 C -0.04 -0.57 6.06 29.77 0.18 -0.39 16 22 C -0.07 -0.87 6.45 71.90 0.46 -0.41 16 23 S -0.28 -5.40 22.26 -56.49 -1.26 -6.66 16 24 C 0.01 0.14 6.41 71.37 0.46 0.60 16 25 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 29 H 0.38 13.86 8.60 -213.31 -1.83 12.03 16 30 H 0.15 3.55 7.94 -2.91 -0.02 3.53 16 31 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.09 2.73 6.17 -2.39 -0.01 2.71 16 34 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16 38 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -64.07 336.93 1.93 -62.15 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: -0.80 Total: 23.27 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 5.40 Total: -12.33 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -3.26 Total: -109.67 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 1.85 Total: 43.24 kcal Atomic # 16 Polarization: -5.40 SS G_CDS: -1.26 Total: -6.66 kcal Total: -64.07 1.93 -62.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884442222.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.010 kcal (2) G-P(sol) polarization free energy of solvation -64.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds