Wall clock time and date at job start Tue Mar 31 2020 07:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 115.56007 * 2 1 4 4 C 1.53074 * 117.50953 * 214.30016 * 2 1 3 5 5 H 1.08998 * 117.51326 * 359.97438 * 4 2 1 6 6 Cl 1.80304 * 117.49284 * 145.03589 * 4 2 1 7 7 C 1.52993 * 117.49849 * 145.69263 * 2 1 3 8 8 H 1.09004 * 117.50019 * 214.99693 * 7 2 1 9 9 C 1.53002 * 117.50085 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47009 * 243.10115 * 9 7 2 11 11 C 1.46896 * 110.99846 * 62.34296 * 10 9 7 12 12 C 1.50708 * 109.47392 * 66.04244 * 11 10 9 13 13 H 1.08001 * 119.99473 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00103 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00132 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99912 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47275 * 59.99814 * 16 14 12 18 18 H 1.48504 * 109.47426 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47164 * 299.99659 * 16 14 12 20 20 C 1.46898 * 111.00452 * 298.38694 * 10 9 7 21 21 C 1.50698 * 109.46964 * 288.21106 * 20 10 9 22 22 C 1.38671 * 120.42106 * 313.89653 * 21 20 10 23 23 C 1.38630 * 118.42277 * 180.02562 * 22 21 20 24 24 C 1.38227 * 119.16002 * 359.97438 * 23 22 21 25 25 N 1.31860 * 120.76371 * 0.02562 * 24 23 22 26 26 C 1.31882 * 121.72431 * 359.97438 * 25 24 23 27 27 H 1.09006 * 109.46751 * 274.30668 * 1 2 3 28 28 H 1.09002 * 109.47392 * 34.30710 * 1 2 3 29 29 H 1.08995 * 109.47552 * 154.31210 * 1 2 3 30 30 H 1.09005 * 109.46809 * 123.10798 * 9 7 2 31 31 H 1.08995 * 109.46947 * 3.10606 * 9 7 2 32 32 H 1.08999 * 109.47521 * 186.04457 * 11 10 9 33 33 H 1.09002 * 109.47077 * 306.04646 * 11 10 9 34 34 H 0.97001 * 120.00162 * 180.02562 * 15 14 12 35 35 H 1.09002 * 109.47047 * 168.21060 * 20 10 9 36 36 H 1.09001 * 109.46732 * 48.21040 * 20 10 9 37 37 H 1.08000 * 120.78770 * 359.97438 * 22 21 20 38 38 H 1.07997 * 120.42233 * 179.97438 * 23 22 21 39 39 H 1.07994 * 119.61899 * 179.97438 * 24 23 22 40 40 H 1.08004 * 119.61170 * 180.28318 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2371 -1.1216 -0.7651 5 1 1.6122 -1.8596 -1.2680 6 17 3.7841 -0.7148 -1.5971 7 6 2.2364 -1.1210 0.7649 8 1 3.1714 -0.8751 1.2685 9 6 1.3588 -2.1559 1.4718 10 7 1.5917 -2.0877 2.9206 11 6 1.2110 -0.7728 3.4536 12 6 -0.2789 -0.5892 3.3209 13 1 -0.8825 -1.3709 2.8839 14 6 -0.8713 0.5772 3.7564 15 7 -0.1361 1.5293 4.2882 16 14 -2.7181 0.8045 3.5926 17 1 -3.4176 -0.2599 4.3561 18 1 -3.1030 2.1338 4.1313 19 1 -3.1021 0.7202 2.1605 20 6 2.9896 -2.4024 3.2446 21 6 3.2340 -3.8748 3.0369 22 6 2.3348 -4.8115 3.5237 23 6 2.6008 -6.1551 3.3097 24 6 3.7452 -6.5139 2.6224 25 7 4.5782 -5.5957 2.1736 26 6 4.3572 -4.3088 2.3589 27 1 -0.3633 0.0772 1.0248 28 1 -0.3634 0.8489 -0.5792 29 1 -0.3634 -0.9260 -0.4454 30 1 1.6099 -3.1530 1.1100 31 1 0.3099 -1.9467 1.2621 32 1 1.4924 -0.7115 4.5049 33 1 1.7247 0.0088 2.8938 34 1 -0.5529 2.3497 4.5949 35 1 3.1884 -2.1442 4.2848 36 1 3.6510 -1.8291 2.5951 37 1 1.4486 -4.5016 4.0577 38 1 1.9225 -6.9118 3.6752 39 1 3.9598 -7.5585 2.4519 40 1 5.0602 -3.5855 1.9726 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891457886.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:33 Heat of formation + Delta-G solvation = 52.283749 kcal Electronic energy + Delta-G solvation = -21751.100946 eV Core-core repulsion = 18592.350860 eV Total energy + Delta-G solvation = -3158.750086 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.02646 -38.60953 -36.13899 -35.02041 -33.01668 -32.00978 -31.31591 -28.35985 -27.16690 -26.73764 -24.34435 -23.28518 -21.83324 -21.65417 -20.59169 -18.62715 -16.85619 -16.41163 -16.28097 -15.87108 -15.01367 -14.83692 -14.38275 -14.29737 -13.77784 -13.44714 -13.18851 -12.87757 -12.71183 -12.42546 -12.15169 -11.93110 -11.77461 -11.57934 -11.43591 -11.18632 -11.09405 -10.80787 -10.76275 -10.58275 -10.56538 -10.02963 -9.55591 -9.47456 -9.30535 -9.27190 -9.13662 -8.72278 -8.51470 -7.40674 -6.11736 -4.12248 1.30458 1.54774 2.38274 3.24860 3.31447 3.33041 3.86414 4.01344 4.32935 4.60202 4.73495 4.92947 5.02140 5.04709 5.08708 5.17316 5.24284 5.33254 5.37841 5.58646 5.73173 5.81657 5.86254 5.91811 6.00464 6.06492 6.10861 6.19202 6.33265 6.40451 6.50587 6.59524 6.72105 6.92085 7.00898 7.15362 7.28942 7.67693 7.94727 8.05890 8.14374 8.41149 8.93360 9.50280 10.98551 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.011192 B = 0.006134 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.098870 B = 4563.688596 C = 6423.121303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 H 0.106 0.894 4 C -0.082 4.082 5 H 0.131 0.869 6 Cl -0.166 7.166 7 C -0.156 4.156 8 H 0.109 0.891 9 C 0.091 3.909 10 N -0.523 5.523 11 C 0.191 3.809 12 C -0.503 4.503 13 H 0.062 0.938 14 C 0.061 3.939 15 N -0.893 5.893 16 Si 0.888 3.112 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.275 1.275 20 C 0.085 3.915 21 C -0.116 4.116 22 C -0.047 4.047 23 C -0.179 4.179 24 C 0.082 3.918 25 N -0.490 5.490 26 C 0.094 3.906 27 H 0.110 0.890 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.028 0.972 33 H 0.002 0.998 34 H 0.262 0.738 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.143 0.857 38 H 0.129 0.871 39 H 0.148 0.852 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.619 -8.809 -5.577 11.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 H 0.124 0.876 4 C -0.126 4.126 5 H 0.149 0.851 6 Cl -0.140 7.140 7 C -0.177 4.177 8 H 0.127 0.873 9 C -0.038 4.038 10 N -0.245 5.245 11 C 0.066 3.934 12 C -0.541 4.541 13 H 0.080 0.920 14 C -0.141 4.141 15 N -0.532 5.532 16 Si 0.716 3.284 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.201 1.201 20 C -0.043 4.043 21 C -0.119 4.119 22 C -0.073 4.073 23 C -0.199 4.199 24 C -0.075 4.075 25 N -0.199 5.199 26 C -0.063 4.063 27 H 0.128 0.872 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.046 0.954 33 H 0.020 0.980 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.062 0.938 37 H 0.161 0.839 38 H 0.147 0.853 39 H 0.165 0.835 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.166 -9.202 -5.759 12.022 hybrid contribution -1.053 1.172 -0.075 1.577 sum 4.114 -8.029 -5.834 10.744 Atomic orbital electron populations 1.21670 0.91516 1.00479 1.05914 1.22748 0.96381 0.94183 0.99809 0.87571 1.25442 0.88368 1.04930 0.93835 0.85144 1.98671 1.38906 1.94846 1.81532 1.23673 1.02197 1.01428 0.90361 0.87281 1.21800 0.99764 0.94826 0.87426 1.62399 1.16621 1.34821 1.10683 1.19789 0.96407 0.82342 0.94859 1.20979 0.91969 1.01062 1.40096 0.92013 1.24919 0.97825 0.95981 0.95399 1.69930 1.35426 1.06856 1.41000 0.86724 0.85821 0.77316 0.78554 1.20223 1.21393 1.20083 1.21036 0.92036 0.89901 1.01375 1.21034 0.95311 0.97446 0.98060 1.21586 0.98480 0.91732 0.95518 1.22156 0.99110 0.97146 1.01461 1.22627 0.91067 0.98837 0.95006 1.67638 1.31010 1.02010 1.19232 1.22622 0.95773 0.92298 0.95595 0.87194 0.92983 0.93228 0.92512 0.88790 0.95412 0.97989 0.92812 0.89835 0.93844 0.83881 0.85286 0.83507 0.83434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.68 37.16 0.32 -1.97 16 2 C -0.11 -1.81 6.25 -90.58 -0.57 -2.38 16 3 H 0.11 1.77 8.14 -51.93 -0.42 1.34 16 4 C -0.08 -1.18 6.40 -26.69 -0.17 -1.35 16 5 H 0.13 1.73 8.05 -51.93 -0.42 1.32 16 6 Cl -0.17 -2.41 29.40 -51.86 -1.52 -3.94 16 7 C -0.16 -2.51 3.95 -90.62 -0.36 -2.87 16 8 H 0.11 1.84 6.06 -51.93 -0.31 1.52 16 9 C 0.09 1.53 5.17 -3.82 -0.02 1.51 16 10 N -0.52 -9.62 4.20 -237.51 -1.00 -10.61 16 11 C 0.19 4.32 4.55 -4.97 -0.02 4.29 16 12 C -0.50 -12.29 6.35 -34.44 -0.22 -12.50 16 13 H 0.06 1.50 7.11 -52.49 -0.37 1.13 16 14 C 0.06 1.56 5.43 -17.82 -0.10 1.46 16 15 N -0.89 -24.43 13.29 55.43 0.74 -23.69 16 16 Si 0.89 19.97 29.54 -169.99 -5.02 14.95 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 C 0.09 1.36 5.13 -4.98 -0.03 1.34 16 21 C -0.12 -1.70 4.71 -104.48 -0.49 -2.19 16 22 C -0.05 -0.66 9.50 -39.28 -0.37 -1.03 16 23 C -0.18 -2.17 10.11 -39.44 -0.40 -2.57 16 24 C 0.08 1.02 11.18 -17.54 -0.20 0.83 16 25 N -0.49 -7.16 10.36 -13.25 -0.14 -7.30 16 26 C 0.09 1.35 10.83 -17.55 -0.19 1.16 16 27 H 0.11 2.19 5.55 -51.93 -0.29 1.90 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.73 7.52 -51.93 -0.39 0.34 16 30 H 0.06 0.92 7.45 -51.93 -0.39 0.53 16 31 H 0.09 1.71 4.55 -51.93 -0.24 1.47 16 32 H 0.03 0.70 7.86 -51.93 -0.41 0.29 16 33 H 0.00 0.06 6.96 -51.93 -0.36 -0.31 16 34 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.08 1.36 7.81 -51.93 -0.41 0.95 16 36 H 0.04 0.68 5.58 -51.93 -0.29 0.39 16 37 H 0.14 2.08 7.97 -52.49 -0.42 1.66 16 38 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 39 H 0.15 1.41 8.06 -52.49 -0.42 0.98 16 40 H 0.15 1.90 8.00 -52.48 -0.42 1.48 16 LS Contribution 337.54 15.07 5.09 5.09 Total: -1.00 -26.44 337.54 -10.20 -36.64 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.54 Total: 5.15 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -2.81 Total: -16.28 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: -0.40 Total: -41.61 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 17 Polarization: -2.41 SS G_CDS: -1.52 Total: -3.94 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -26.44 -10.20 -36.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891457886.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.925 kcal (2) G-P(sol) polarization free energy of solvation -26.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds