Wall clock time and date at job start Tue Mar 31 2020 07:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 115.56007 * 2 1 4 4 C 1.53074 * 117.50953 * 214.30016 * 2 1 3 5 5 H 1.08998 * 117.51326 * 359.97438 * 4 2 1 6 6 Cl 1.80304 * 117.49284 * 145.03589 * 4 2 1 7 7 C 1.52993 * 117.49849 * 145.69263 * 2 1 3 8 8 H 1.09004 * 117.50019 * 214.99693 * 7 2 1 9 9 C 1.53002 * 117.50085 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47009 * 243.10115 * 9 7 2 11 11 C 1.46896 * 110.99846 * 62.34296 * 10 9 7 12 12 C 1.50708 * 109.47392 * 66.04244 * 11 10 9 13 13 H 1.08001 * 119.99473 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00103 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00132 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99912 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47275 * 59.99814 * 16 14 12 18 18 H 1.48504 * 109.47426 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47164 * 299.99659 * 16 14 12 20 20 C 1.46898 * 111.00452 * 298.38694 * 10 9 7 21 21 C 1.50698 * 109.46964 * 288.21106 * 20 10 9 22 22 C 1.38671 * 120.42106 * 313.89653 * 21 20 10 23 23 C 1.38630 * 118.42277 * 180.02562 * 22 21 20 24 24 C 1.38227 * 119.16002 * 359.97438 * 23 22 21 25 25 N 1.31860 * 120.76371 * 0.02562 * 24 23 22 26 26 C 1.31882 * 121.72431 * 359.97438 * 25 24 23 27 27 H 1.09006 * 109.46751 * 274.30668 * 1 2 3 28 28 H 1.09002 * 109.47392 * 34.30710 * 1 2 3 29 29 H 1.08995 * 109.47552 * 154.31210 * 1 2 3 30 30 H 1.09005 * 109.46809 * 123.10798 * 9 7 2 31 31 H 1.08995 * 109.46947 * 3.10606 * 9 7 2 32 32 H 1.08999 * 109.47521 * 186.04457 * 11 10 9 33 33 H 1.09002 * 109.47077 * 306.04646 * 11 10 9 34 34 H 0.97001 * 120.00162 * 180.02562 * 15 14 12 35 35 H 1.09002 * 109.47047 * 168.21060 * 20 10 9 36 36 H 1.09001 * 109.46732 * 48.21040 * 20 10 9 37 37 H 1.08000 * 120.78770 * 359.97438 * 22 21 20 38 38 H 1.07997 * 120.42233 * 179.97438 * 23 22 21 39 39 H 1.07994 * 119.61899 * 179.97438 * 24 23 22 40 40 H 1.08004 * 119.61170 * 180.28318 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2371 -1.1216 -0.7651 5 1 1.6122 -1.8596 -1.2680 6 17 3.7841 -0.7148 -1.5971 7 6 2.2364 -1.1210 0.7649 8 1 3.1714 -0.8751 1.2685 9 6 1.3588 -2.1559 1.4718 10 7 1.5917 -2.0877 2.9206 11 6 1.2110 -0.7728 3.4536 12 6 -0.2789 -0.5892 3.3209 13 1 -0.8825 -1.3709 2.8839 14 6 -0.8713 0.5772 3.7564 15 7 -0.1361 1.5293 4.2882 16 14 -2.7181 0.8045 3.5926 17 1 -3.4176 -0.2599 4.3561 18 1 -3.1030 2.1338 4.1313 19 1 -3.1021 0.7202 2.1605 20 6 2.9896 -2.4024 3.2446 21 6 3.2340 -3.8748 3.0369 22 6 2.3348 -4.8115 3.5237 23 6 2.6008 -6.1551 3.3097 24 6 3.7452 -6.5139 2.6224 25 7 4.5782 -5.5957 2.1736 26 6 4.3572 -4.3088 2.3589 27 1 -0.3633 0.0772 1.0248 28 1 -0.3634 0.8489 -0.5792 29 1 -0.3634 -0.9260 -0.4454 30 1 1.6099 -3.1530 1.1100 31 1 0.3099 -1.9467 1.2621 32 1 1.4924 -0.7115 4.5049 33 1 1.7247 0.0088 2.8938 34 1 -0.5529 2.3497 4.5949 35 1 3.1884 -2.1442 4.2848 36 1 3.6510 -1.8291 2.5951 37 1 1.4486 -4.5016 4.0577 38 1 1.9225 -6.9118 3.6752 39 1 3.9598 -7.5585 2.4519 40 1 5.0602 -3.5855 1.9726 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891457886.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:33 Heat of formation + Delta-G solvation = 39.135353 kcal Electronic energy + Delta-G solvation = -21751.671104 eV Core-core repulsion = 18592.350860 eV Total energy + Delta-G solvation = -3159.320244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.14150 -39.92457 -37.48642 -36.27286 -34.80902 -33.25514 -32.47302 -29.85104 -28.73484 -28.07435 -25.88923 -24.39554 -23.31428 -22.86126 -21.94612 -20.00751 -18.31285 -17.81985 -17.59908 -17.14563 -16.54360 -16.04845 -15.87364 -15.71432 -15.07546 -14.64730 -14.39851 -14.33504 -13.99768 -13.79444 -13.55391 -13.35281 -13.11795 -13.02874 -12.77955 -12.71553 -12.54834 -12.41969 -12.26179 -12.01079 -11.88445 -11.82203 -11.27332 -10.64484 -10.61035 -10.56020 -10.44631 -10.28784 -9.80224 -8.95520 -8.09930 -6.15032 0.26841 0.47442 1.17644 1.46213 1.47841 1.53934 2.45629 2.58576 2.95269 3.23915 3.33725 3.61768 3.65535 3.74327 3.81268 3.98738 4.10413 4.24363 4.25348 4.39830 4.48069 4.58283 4.63155 4.67215 4.76457 4.78474 4.87859 4.96483 5.01673 5.20515 5.24460 5.33399 5.36904 5.44654 5.53693 5.62108 5.75365 5.88921 6.14934 6.38218 6.66043 6.98065 7.10404 7.51560 9.00510 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.011192 B = 0.006134 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.098870 B = 4563.688596 C = 6423.121303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.124 4.124 3 H 0.096 0.904 4 C -0.056 4.056 5 H 0.152 0.848 6 Cl -0.162 7.162 7 C -0.163 4.163 8 H 0.099 0.901 9 C 0.100 3.900 10 N -0.525 5.525 11 C 0.209 3.791 12 C -0.495 4.495 13 H 0.064 0.936 14 C 0.014 3.986 15 N -0.931 5.931 16 Si 0.944 3.056 17 H -0.274 1.274 18 H -0.293 1.293 19 H -0.262 1.262 20 C 0.091 3.909 21 C -0.125 4.125 22 C -0.059 4.059 23 C -0.169 4.169 24 C 0.082 3.918 25 N -0.509 5.509 26 C 0.089 3.911 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.083 0.917 32 H -0.003 1.003 33 H -0.019 1.019 34 H 0.260 0.740 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.134 0.866 38 H 0.160 0.840 39 H 0.180 0.820 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.202 -10.934 -6.959 13.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.143 4.143 3 H 0.114 0.886 4 C -0.100 4.100 5 H 0.169 0.831 6 Cl -0.135 7.135 7 C -0.183 4.183 8 H 0.117 0.883 9 C -0.029 4.029 10 N -0.246 5.246 11 C 0.084 3.916 12 C -0.534 4.534 13 H 0.082 0.918 14 C -0.184 4.184 15 N -0.572 5.572 16 Si 0.770 3.230 17 H -0.199 1.199 18 H -0.220 1.220 19 H -0.187 1.187 20 C -0.038 4.038 21 C -0.127 4.127 22 C -0.085 4.085 23 C -0.189 4.189 24 C -0.074 4.074 25 N -0.218 5.218 26 C -0.067 4.067 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.015 0.985 33 H -0.001 1.001 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.152 0.848 38 H 0.177 0.823 39 H 0.197 0.803 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.755 -11.348 -7.158 14.235 hybrid contribution -0.856 1.744 0.352 1.975 sum 3.898 -9.604 -6.805 12.399 Atomic orbital electron populations 1.21547 0.91597 1.01948 1.03918 1.22710 0.96378 0.94153 1.01056 0.88570 1.25419 0.88147 1.03738 0.92695 0.83060 1.98679 1.38761 1.94855 1.81254 1.23522 1.01698 1.01472 0.91657 0.88312 1.21691 0.99229 0.95648 0.86324 1.62272 1.18458 1.31972 1.11941 1.19382 0.95491 0.83925 0.92841 1.21196 0.92775 1.00682 1.38724 0.91827 1.25607 1.01592 0.95867 0.95340 1.70060 1.37059 1.07388 1.42715 0.85817 0.81269 0.76783 0.79093 1.19925 1.21952 1.18664 1.20951 0.90563 0.91429 1.00809 1.20816 0.96214 0.96242 0.99427 1.21642 0.98215 0.92826 0.95811 1.22438 0.99326 0.96744 1.00381 1.23205 0.90478 0.99974 0.93792 1.67693 1.31899 1.02186 1.20005 1.22702 0.95716 0.92712 0.95590 0.90681 0.92022 0.91361 0.91220 0.89889 0.98533 1.00148 0.93155 0.90923 0.93515 0.84785 0.82264 0.80311 0.82748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.28 8.68 71.98 0.62 -3.65 16 2 C -0.12 -3.94 6.25 -10.77 -0.07 -4.00 16 3 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 4 C -0.06 -1.52 6.40 30.62 0.20 -1.33 16 5 H 0.15 3.54 8.05 -2.39 -0.02 3.52 16 6 Cl -0.16 -4.44 29.40 -2.72 -0.08 -4.52 16 7 C -0.16 -5.17 3.95 -10.80 -0.04 -5.21 16 8 H 0.10 3.36 6.06 -2.38 -0.01 3.34 16 9 C 0.10 3.30 5.17 86.30 0.45 3.74 16 10 N -0.52 -19.55 4.20 -905.36 -3.81 -23.35 16 11 C 0.21 9.83 4.55 85.56 0.39 10.22 16 12 C -0.50 -24.61 6.35 25.60 0.16 -24.45 16 13 H 0.06 3.09 7.11 -2.91 -0.02 3.07 16 14 C 0.01 0.74 5.43 84.65 0.46 1.20 16 15 N -0.93 -52.44 13.29 21.45 0.28 -52.16 16 16 Si 0.94 41.13 29.54 68.60 2.03 43.16 16 17 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 18 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 19 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 20 C 0.09 2.96 5.13 85.56 0.44 3.39 16 21 C -0.12 -3.56 4.71 -19.77 -0.09 -3.65 16 22 C -0.06 -1.57 9.50 22.47 0.21 -1.35 16 23 C -0.17 -3.62 10.11 22.36 0.23 -3.39 16 24 C 0.08 1.80 11.18 84.69 0.95 2.75 16 25 N -0.51 -13.77 10.36 -195.84 -2.03 -15.80 16 26 C 0.09 2.45 10.83 84.67 0.92 3.36 16 27 H 0.07 2.99 5.55 -2.38 -0.01 2.98 16 28 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.07 1.88 7.52 -2.39 -0.02 1.86 16 30 H 0.07 2.14 7.45 -2.38 -0.02 2.12 16 31 H 0.08 2.95 4.55 -2.39 -0.01 2.94 16 32 H 0.00 -0.18 7.86 -2.39 -0.02 -0.20 16 33 H -0.02 -0.98 6.96 -2.39 -0.02 -0.99 16 34 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 35 H 0.07 2.48 7.81 -2.39 -0.02 2.46 16 36 H 0.05 1.48 5.58 -2.39 -0.01 1.47 16 37 H 0.13 3.81 7.97 -2.91 -0.02 3.79 16 38 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 40 H 0.16 3.86 8.00 -2.91 -0.02 3.83 16 Total: -1.00 -57.07 337.54 2.25 -54.82 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 1.04 Total: 20.22 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: 4.82 Total: -22.37 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -5.55 Total: -91.31 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Atomic # 17 Polarization: -4.44 SS G_CDS: -0.08 Total: -4.52 kcal Total: -57.07 2.25 -54.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891457886.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.953 kcal (2) G-P(sol) polarization free energy of solvation -57.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds