Wall clock time and date at job start Tue Mar 31 2020 07:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 115.56361 * 2 1 4 4 C 1.52995 * 117.49962 * 145.69815 * 2 1 3 5 5 H 1.08997 * 117.52091 * 0.02562 * 4 2 1 6 6 C 1.53003 * 117.50178 * 214.97467 * 4 2 1 7 7 N 1.46894 * 109.47182 * 169.92012 * 6 4 2 8 8 C 1.46897 * 110.99796 * 74.88362 * 7 6 4 9 9 C 1.50703 * 109.47033 * 199.58249 * 8 7 6 10 10 H 1.08000 * 120.00136 * 355.08354 * 9 8 7 11 11 C 1.37881 * 120.00117 * 175.35225 * 9 8 7 12 12 N 1.31516 * 119.99759 * 359.72911 * 11 9 8 13 13 Si 1.86794 * 120.00069 * 179.72805 * 11 9 8 14 14 H 1.48500 * 109.47349 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47096 * 120.00070 * 13 11 9 16 16 H 1.48505 * 109.47383 * 240.00025 * 13 11 9 17 17 C 1.46903 * 111.00034 * 198.83233 * 7 6 4 18 18 C 1.50702 * 109.46886 * 66.04876 * 17 7 6 19 19 C 1.38671 * 120.41984 * 90.00294 * 18 17 7 20 20 C 1.38630 * 118.42118 * 180.02562 * 19 18 17 21 21 C 1.38226 * 119.16152 * 359.97438 * 20 19 18 22 22 N 1.31858 * 120.76243 * 359.97438 * 21 20 19 23 23 C 1.31878 * 121.72473 * 359.70553 * 22 21 20 24 24 C 1.52996 * 60.00431 * 107.48517 * 4 2 1 25 25 H 1.09002 * 117.49743 * 107.51306 * 24 4 2 26 26 Cl 1.80298 * 117.50011 * 252.51184 * 24 4 2 27 27 H 1.09002 * 109.47087 * 274.30953 * 1 2 3 28 28 H 1.09008 * 109.47251 * 34.30549 * 1 2 3 29 29 H 1.08997 * 109.47367 * 154.30397 * 1 2 3 30 30 H 1.09000 * 109.46704 * 49.92125 * 6 4 2 31 31 H 1.08996 * 109.47225 * 289.92878 * 6 4 2 32 32 H 1.09001 * 109.47838 * 79.58829 * 8 7 6 33 33 H 1.09001 * 109.47286 * 319.58247 * 8 7 6 34 34 H 0.97005 * 119.99825 * 180.02562 * 12 11 9 35 35 H 1.08997 * 109.47281 * 186.04877 * 17 7 6 36 36 H 1.09001 * 109.47165 * 306.05192 * 17 7 6 37 37 H 1.07995 * 120.78750 * 0.02562 * 19 18 17 38 38 H 1.08001 * 120.41834 * 179.97438 * 20 19 18 39 39 H 1.07996 * 119.61712 * 180.02562 * 21 20 19 40 40 H 1.08009 * 119.61720 * 180.31220 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1211 0.7648 5 1 1.6115 -1.8591 1.2677 6 6 3.5490 -0.7762 1.4712 7 7 3.9467 -1.8933 2.3382 8 6 4.4779 -3.0109 1.5465 9 6 4.4238 -4.2759 2.3638 10 1 4.1087 -4.2388 3.3961 11 6 4.7818 -5.4799 1.7952 12 7 5.1655 -5.5251 0.5380 13 14 4.7220 -7.0467 2.8104 14 1 4.2611 -6.7282 4.1856 15 1 3.7803 -8.0079 2.1822 16 1 6.0778 -7.6497 2.8705 17 6 4.9188 -1.4553 3.3488 18 6 4.2579 -0.4854 4.2942 19 6 3.6259 -0.9426 5.4407 20 6 3.0310 -0.0142 6.2810 21 6 3.0878 1.3268 5.9507 22 7 3.6986 1.7257 4.8523 23 6 4.2805 0.8714 4.0333 24 6 2.2363 -1.1210 -0.7652 25 1 3.1715 -0.8755 -1.2685 26 17 1.2021 -2.3407 -1.5977 27 1 -0.3633 0.0772 1.0248 28 1 -0.3634 0.8489 -0.5792 29 1 -0.3634 -0.9260 -0.4456 30 1 3.4119 0.1211 2.0747 31 1 4.3260 -0.5987 0.7278 32 1 5.5111 -2.8013 1.2695 33 1 3.8780 -3.1349 0.6449 34 1 5.4170 -6.3722 0.1379 35 1 5.2770 -2.3200 3.9072 36 1 5.7597 -0.9669 2.8564 37 1 3.5977 -1.9968 5.6733 38 1 2.5296 -0.3347 7.1822 39 1 2.6272 2.0564 6.6003 40 1 4.7756 1.2361 3.1453 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891457887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:37 Heat of formation + Delta-G solvation = 51.223137 kcal Electronic energy + Delta-G solvation = -21344.326494 eV Core-core repulsion = 18185.530416 eV Total energy + Delta-G solvation = -3158.796078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.05934 -38.32329 -36.31925 -35.01227 -32.86858 -32.21202 -31.27928 -29.09184 -27.28357 -26.45271 -24.08766 -23.31638 -21.98540 -21.06802 -20.31206 -19.84479 -16.91207 -16.48462 -16.14506 -15.47508 -15.36581 -14.78082 -14.58529 -14.24635 -13.61604 -13.49544 -13.33819 -13.02360 -12.81853 -12.75435 -12.24191 -12.04896 -11.68800 -11.60257 -11.41720 -11.26367 -11.09339 -10.99951 -10.69954 -10.59279 -10.43786 -9.98072 -9.57731 -9.55221 -9.31198 -9.25609 -9.20050 -8.75841 -8.44176 -7.40376 -6.03817 -4.05253 1.26975 1.49223 2.48569 3.29301 3.37417 3.40468 3.76200 3.95019 4.39746 4.56165 4.59700 4.77440 4.98458 5.06556 5.07884 5.18555 5.23990 5.31764 5.34711 5.38965 5.62756 5.72369 5.77455 5.83241 5.86899 5.88924 5.96692 6.03606 6.07561 6.29652 6.30252 6.33341 6.57888 6.65590 6.87259 7.16154 7.26045 7.76296 8.03585 8.08872 8.11713 8.46536 9.01267 9.58883 11.06590 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.008567 B = 0.006909 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3267.487449 B = 4051.816107 C = 6694.437228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.147 4.147 3 H 0.110 0.890 4 C -0.108 4.108 5 H 0.125 0.875 6 C 0.077 3.923 7 N -0.526 5.526 8 C 0.193 3.807 9 C -0.506 4.506 10 H 0.062 0.938 11 C 0.057 3.943 12 N -0.895 5.895 13 Si 0.894 3.106 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.286 1.286 17 C 0.100 3.900 18 C -0.111 4.111 19 C -0.055 4.055 20 C -0.174 4.174 21 C 0.083 3.917 22 N -0.489 5.489 23 C 0.094 3.906 24 C -0.072 4.072 25 H 0.131 0.869 26 Cl -0.145 7.145 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.030 0.970 32 H -0.011 1.011 33 H 0.041 0.959 34 H 0.260 0.740 35 H 0.095 0.905 36 H 0.034 0.966 37 H 0.137 0.863 38 H 0.130 0.870 39 H 0.149 0.851 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.132 12.455 4.065 14.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.166 4.166 3 H 0.128 0.872 4 C -0.127 4.127 5 H 0.143 0.857 6 C -0.052 4.052 7 N -0.250 5.250 8 C 0.068 3.932 9 C -0.544 4.544 10 H 0.080 0.920 11 C -0.144 4.144 12 N -0.534 5.534 13 Si 0.722 3.278 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.212 1.212 17 C -0.028 4.028 18 C -0.113 4.113 19 C -0.082 4.082 20 C -0.194 4.194 21 C -0.074 4.074 22 N -0.198 5.198 23 C -0.063 4.063 24 C -0.116 4.116 25 H 0.149 0.851 26 Cl -0.117 7.117 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.007 0.993 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.113 0.887 36 H 0.052 0.948 37 H 0.155 0.845 38 H 0.148 0.852 39 H 0.166 0.834 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.535 12.940 3.893 14.603 hybrid contribution 0.660 -1.721 0.071 1.845 sum -4.875 11.219 3.964 12.859 Atomic orbital electron populations 1.21433 0.92259 1.02838 1.02050 1.22883 0.96275 0.94448 1.03021 0.87185 1.22886 0.99301 0.99891 0.90624 0.85737 1.21748 0.93524 0.94893 0.95025 1.62144 1.40762 1.06850 1.15251 1.19816 0.93150 0.86896 0.93306 1.21134 1.43980 0.91240 0.98085 0.91985 1.24958 0.95479 0.99029 0.94947 1.69960 1.45407 1.26060 1.11994 0.86509 0.77509 0.83409 0.80378 1.19737 1.21038 1.21181 1.20940 0.92233 0.96610 0.93047 1.21079 0.98512 0.95428 0.96280 1.21564 0.93404 1.00491 0.92722 1.22121 1.01601 0.94565 1.01116 1.22618 0.96489 0.94382 0.93959 1.67627 1.08651 1.39401 1.04093 1.22621 0.96522 0.89422 0.97732 1.25285 0.97227 0.94496 0.94566 0.85090 1.98675 1.71552 1.60617 1.80904 0.91992 0.92363 0.91218 0.90965 0.95162 0.99326 0.94048 0.92986 0.88668 0.94797 0.84549 0.85206 0.83391 0.83471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 10.08 37.15 0.37 -1.17 16 2 C -0.15 -1.92 6.13 -90.62 -0.56 -2.48 16 3 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 4 C -0.11 -1.74 4.66 -90.62 -0.42 -2.16 16 5 H 0.12 2.30 8.14 -51.93 -0.42 1.88 16 6 C 0.08 1.27 5.10 -3.83 -0.02 1.25 16 7 N -0.53 -10.27 4.35 -237.52 -1.03 -11.30 16 8 C 0.19 4.68 4.57 -4.98 -0.02 4.66 16 9 C -0.51 -13.50 8.61 -34.44 -0.30 -13.79 16 10 H 0.06 1.64 7.65 -52.49 -0.40 1.24 16 11 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 12 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 13 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 14 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 17 C 0.10 1.73 4.97 -4.97 -0.02 1.71 16 18 C -0.11 -1.67 4.95 -104.48 -0.52 -2.18 16 19 C -0.06 -0.78 9.86 -39.28 -0.39 -1.17 16 20 C -0.17 -2.09 10.11 -39.44 -0.40 -2.49 16 21 C 0.08 1.02 11.18 -17.54 -0.20 0.82 16 22 N -0.49 -7.01 10.36 -13.25 -0.14 -7.14 16 23 C 0.09 1.34 9.05 -17.55 -0.16 1.18 16 24 C -0.07 -1.10 6.67 -26.73 -0.18 -1.28 16 25 H 0.13 1.91 8.03 -51.93 -0.42 1.49 16 26 Cl -0.14 -2.40 27.39 -51.86 -1.42 -3.82 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 29 H 0.07 0.91 6.12 -51.93 -0.32 0.59 16 30 H 0.07 1.09 5.03 -51.93 -0.26 0.82 16 31 H 0.03 0.50 7.74 -51.93 -0.40 0.10 16 32 H -0.01 -0.29 8.00 -51.93 -0.42 -0.70 16 33 H 0.04 1.10 7.27 -51.93 -0.38 0.72 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.10 1.78 7.26 -51.93 -0.38 1.41 16 36 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 37 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 38 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 39 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.15 1.88 7.67 -52.48 -0.40 1.48 16 LS Contribution 345.55 15.07 5.21 5.21 Total: -1.00 -29.37 345.55 -10.46 -39.83 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -5.89 Total: 1.90 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -2.90 Total: -15.62 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: -0.43 Total: -43.68 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 17 Polarization: -2.40 SS G_CDS: -1.42 Total: -3.82 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.37 -10.46 -39.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891457887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.051 kcal (2) G-P(sol) polarization free energy of solvation -29.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds