Wall clock time and date at job start Tue Mar 31 2020 07:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 115.56361 * 2 1 4 4 C 1.52995 * 117.49962 * 145.69815 * 2 1 3 5 5 H 1.08997 * 117.52091 * 0.02562 * 4 2 1 6 6 C 1.53003 * 117.50178 * 214.97467 * 4 2 1 7 7 N 1.46894 * 109.47182 * 169.92012 * 6 4 2 8 8 C 1.46897 * 110.99796 * 74.88362 * 7 6 4 9 9 C 1.50703 * 109.47033 * 199.58249 * 8 7 6 10 10 H 1.08000 * 120.00136 * 355.08354 * 9 8 7 11 11 C 1.37881 * 120.00117 * 175.35225 * 9 8 7 12 12 N 1.31516 * 119.99759 * 359.72911 * 11 9 8 13 13 Si 1.86794 * 120.00069 * 179.72805 * 11 9 8 14 14 H 1.48500 * 109.47349 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47096 * 120.00070 * 13 11 9 16 16 H 1.48505 * 109.47383 * 240.00025 * 13 11 9 17 17 C 1.46903 * 111.00034 * 198.83233 * 7 6 4 18 18 C 1.50702 * 109.46886 * 66.04876 * 17 7 6 19 19 C 1.38671 * 120.41984 * 90.00294 * 18 17 7 20 20 C 1.38630 * 118.42118 * 180.02562 * 19 18 17 21 21 C 1.38226 * 119.16152 * 359.97438 * 20 19 18 22 22 N 1.31858 * 120.76243 * 359.97438 * 21 20 19 23 23 C 1.31878 * 121.72473 * 359.70553 * 22 21 20 24 24 C 1.52996 * 60.00431 * 107.48517 * 4 2 1 25 25 H 1.09002 * 117.49743 * 107.51306 * 24 4 2 26 26 Cl 1.80298 * 117.50011 * 252.51184 * 24 4 2 27 27 H 1.09002 * 109.47087 * 274.30953 * 1 2 3 28 28 H 1.09008 * 109.47251 * 34.30549 * 1 2 3 29 29 H 1.08997 * 109.47367 * 154.30397 * 1 2 3 30 30 H 1.09000 * 109.46704 * 49.92125 * 6 4 2 31 31 H 1.08996 * 109.47225 * 289.92878 * 6 4 2 32 32 H 1.09001 * 109.47838 * 79.58829 * 8 7 6 33 33 H 1.09001 * 109.47286 * 319.58247 * 8 7 6 34 34 H 0.97005 * 119.99825 * 180.02562 * 12 11 9 35 35 H 1.08997 * 109.47281 * 186.04877 * 17 7 6 36 36 H 1.09001 * 109.47165 * 306.05192 * 17 7 6 37 37 H 1.07995 * 120.78750 * 0.02562 * 19 18 17 38 38 H 1.08001 * 120.41834 * 179.97438 * 20 19 18 39 39 H 1.07996 * 119.61712 * 180.02562 * 21 20 19 40 40 H 1.08009 * 119.61720 * 180.31220 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1211 0.7648 5 1 1.6115 -1.8591 1.2677 6 6 3.5490 -0.7762 1.4712 7 7 3.9467 -1.8933 2.3382 8 6 4.4779 -3.0109 1.5465 9 6 4.4238 -4.2759 2.3638 10 1 4.1087 -4.2388 3.3961 11 6 4.7818 -5.4799 1.7952 12 7 5.1655 -5.5251 0.5380 13 14 4.7220 -7.0467 2.8104 14 1 4.2611 -6.7282 4.1856 15 1 3.7803 -8.0079 2.1822 16 1 6.0778 -7.6497 2.8705 17 6 4.9188 -1.4553 3.3488 18 6 4.2579 -0.4854 4.2942 19 6 3.6259 -0.9426 5.4407 20 6 3.0310 -0.0142 6.2810 21 6 3.0878 1.3268 5.9507 22 7 3.6986 1.7257 4.8523 23 6 4.2805 0.8714 4.0333 24 6 2.2363 -1.1210 -0.7652 25 1 3.1715 -0.8755 -1.2685 26 17 1.2021 -2.3407 -1.5977 27 1 -0.3633 0.0772 1.0248 28 1 -0.3634 0.8489 -0.5792 29 1 -0.3634 -0.9260 -0.4456 30 1 3.4119 0.1211 2.0747 31 1 4.3260 -0.5987 0.7278 32 1 5.5111 -2.8013 1.2695 33 1 3.8780 -3.1349 0.6449 34 1 5.4170 -6.3722 0.1379 35 1 5.2770 -2.3200 3.9072 36 1 5.7597 -0.9669 2.8564 37 1 3.5977 -1.9968 5.6733 38 1 2.5296 -0.3347 7.1822 39 1 2.6272 2.0564 6.6003 40 1 4.7756 1.2361 3.1453 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891457887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:36 Heat of formation + Delta-G solvation = 35.049752 kcal Electronic energy + Delta-G solvation = -21345.027825 eV Core-core repulsion = 18185.530416 eV Total energy + Delta-G solvation = -3159.497409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.15357 -39.58607 -37.74502 -36.29397 -34.77579 -33.45486 -32.43971 -30.36621 -28.99840 -27.68628 -25.74023 -24.38289 -23.47592 -22.36213 -21.51962 -21.19565 -18.50998 -17.92250 -17.33159 -16.91073 -16.58920 -16.39920 -15.84218 -15.70468 -15.01582 -14.81794 -14.51456 -14.18768 -14.05189 -13.89182 -13.83846 -13.37987 -13.16468 -13.02071 -12.83855 -12.74595 -12.51329 -12.46809 -12.31471 -12.26123 -11.80182 -11.70184 -11.29771 -10.73835 -10.62967 -10.59695 -10.45878 -10.32723 -9.85992 -9.02193 -8.15873 -6.24372 0.23322 0.42465 1.25105 1.40111 1.41912 1.53531 2.41400 2.57545 2.85949 3.16906 3.28845 3.56234 3.58819 3.79790 3.91544 3.96153 4.04524 4.17071 4.20895 4.35085 4.43203 4.51342 4.59454 4.66367 4.69219 4.77344 4.81877 4.92382 4.96040 5.04977 5.17241 5.20825 5.27248 5.34399 5.43104 5.52513 5.69588 5.85050 6.11237 6.36277 6.61856 6.90573 7.07084 7.44493 8.94411 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.008567 B = 0.006909 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3267.487449 B = 4051.816107 C = 6694.437228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.112 4.112 3 H 0.137 0.863 4 C -0.128 4.128 5 H 0.097 0.903 6 C 0.082 3.918 7 N -0.532 5.532 8 C 0.213 3.787 9 C -0.514 4.514 10 H 0.061 0.939 11 C 0.005 3.995 12 N -0.931 5.931 13 Si 0.959 3.041 14 H -0.262 1.262 15 H -0.284 1.284 16 H -0.280 1.280 17 C 0.106 3.894 18 C -0.124 4.124 19 C -0.069 4.069 20 C -0.165 4.165 21 C 0.085 3.915 22 N -0.504 5.504 23 C 0.092 3.908 24 C -0.084 4.084 25 H 0.136 0.864 26 Cl -0.161 7.161 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.030 0.970 32 H -0.038 1.038 33 H 0.014 0.986 34 H 0.261 0.739 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.132 0.868 38 H 0.162 0.838 39 H 0.183 0.817 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.195 14.176 5.771 16.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.130 4.130 3 H 0.155 0.845 4 C -0.147 4.147 5 H 0.115 0.885 6 C -0.046 4.046 7 N -0.256 5.256 8 C 0.087 3.913 9 C -0.553 4.553 10 H 0.079 0.921 11 C -0.193 4.193 12 N -0.572 5.572 13 Si 0.784 3.216 14 H -0.186 1.186 15 H -0.210 1.210 16 H -0.206 1.206 17 C -0.022 4.022 18 C -0.127 4.127 19 C -0.096 4.096 20 C -0.185 4.185 21 C -0.072 4.072 22 N -0.213 5.213 23 C -0.065 4.065 24 C -0.127 4.127 25 H 0.154 0.846 26 Cl -0.134 7.134 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.048 0.952 32 H -0.021 1.021 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.150 0.850 38 H 0.180 0.820 39 H 0.200 0.800 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.603 14.681 5.615 17.049 hybrid contribution 0.967 -2.178 -0.388 2.414 sum -5.636 12.503 5.227 14.677 Atomic orbital electron populations 1.21480 0.91222 1.03212 1.02759 1.23029 0.96954 0.94264 0.98782 0.84512 1.22740 0.99344 1.01665 0.90927 0.88505 1.21770 0.93610 0.94341 0.94843 1.62028 1.40903 1.07220 1.15423 1.19372 0.91065 0.88289 0.92582 1.21466 1.43228 0.92388 0.98217 0.92061 1.25794 0.95195 1.02385 0.95964 1.70085 1.46623 1.26848 1.13660 0.85487 0.77577 0.79276 0.79214 1.18593 1.20997 1.20600 1.20810 0.92230 0.96465 0.92738 1.20822 0.99973 0.95334 0.96551 1.21703 0.93865 1.00972 0.93035 1.22428 1.00501 0.94037 1.01493 1.23241 0.95216 0.95300 0.93452 1.67702 1.09255 1.39450 1.04912 1.22701 0.96598 0.88892 0.98281 1.25466 0.97981 0.95394 0.93899 0.84648 1.98669 1.71950 1.61621 1.81177 0.91393 0.89949 0.92575 0.88962 0.95222 1.02054 0.96763 0.92975 0.90829 0.94468 0.84997 0.82029 0.79997 0.82525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 10.08 71.98 0.73 -2.11 16 2 C -0.11 -2.70 6.13 -10.80 -0.07 -2.77 16 3 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 4 C -0.13 -4.11 4.66 -10.80 -0.05 -4.16 16 5 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 6 C 0.08 2.72 5.10 86.31 0.44 3.16 16 7 N -0.53 -21.33 4.35 -905.37 -3.94 -25.27 16 8 C 0.21 10.80 4.57 85.56 0.39 11.20 16 9 C -0.51 -28.28 8.61 25.60 0.22 -28.06 16 10 H 0.06 3.30 7.65 -2.91 -0.02 3.28 16 11 C 0.00 0.26 5.46 84.66 0.46 0.72 16 12 N -0.93 -55.65 13.29 21.45 0.28 -55.37 16 13 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 14 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 15 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 17 C 0.11 3.74 4.97 85.56 0.42 4.16 16 18 C -0.12 -3.67 4.95 -19.77 -0.10 -3.76 16 19 C -0.07 -1.86 9.86 22.47 0.22 -1.64 16 20 C -0.17 -3.46 10.11 22.36 0.23 -3.23 16 21 C 0.08 1.79 11.18 84.69 0.95 2.74 16 22 N -0.50 -13.11 10.36 -195.84 -2.03 -15.14 16 23 C 0.09 2.47 9.05 84.67 0.77 3.23 16 24 C -0.08 -2.56 6.67 30.59 0.20 -2.35 16 25 H 0.14 3.95 8.03 -2.39 -0.02 3.93 16 26 Cl -0.16 -5.43 27.39 -2.72 -0.07 -5.51 16 27 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.06 1.40 6.12 -2.39 -0.01 1.39 16 30 H 0.09 2.66 5.03 -2.39 -0.01 2.65 16 31 H 0.03 0.98 7.74 -2.39 -0.02 0.96 16 32 H -0.04 -2.10 8.00 -2.39 -0.02 -2.12 16 33 H 0.01 0.79 7.27 -2.39 -0.02 0.78 16 34 H 0.26 14.81 8.31 -92.70 -0.77 14.04 16 35 H 0.07 2.87 7.26 -2.39 -0.02 2.86 16 36 H 0.04 1.27 8.07 -2.39 -0.02 1.25 16 37 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 38 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 39 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 40 H 0.16 3.76 7.67 -2.91 -0.02 3.74 16 Total: -1.00 -64.83 345.55 2.10 -62.72 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 1.02 Total: 15.36 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 4.82 Total: -22.88 kcal Atomic # 7 Polarization: -90.10 SS G_CDS: -5.68 Total: -95.78 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 17 Polarization: -5.43 SS G_CDS: -0.07 Total: -5.51 kcal Total: -64.83 2.10 -62.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891457887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.774 kcal (2) G-P(sol) polarization free energy of solvation -64.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds