Wall clock time and date at job start Tue Mar 31 2020 07:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 115.56385 * 2 1 4 4 C 1.52998 * 117.49880 * 214.30368 * 2 1 3 5 5 H 1.09006 * 117.49937 * 145.01720 * 4 2 1 6 6 Cl 1.80306 * 117.49847 * 0.02562 * 4 2 1 7 7 C 1.52990 * 60.00298 * 252.51562 * 4 2 1 8 8 H 1.09006 * 117.49630 * 252.50838 * 7 4 2 9 9 C 1.52998 * 117.50280 * 107.49154 * 7 4 2 10 10 N 1.46896 * 109.47414 * 116.49179 * 9 7 4 11 11 C 1.46894 * 111.00623 * 290.36306 * 10 9 7 12 12 C 1.50699 * 109.47623 * 164.80330 * 11 10 9 13 13 H 1.07997 * 119.99834 * 358.78627 * 12 11 10 14 14 C 1.37877 * 119.99905 * 178.79707 * 12 11 10 15 15 N 1.31512 * 120.00476 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99760 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47100 * 89.99452 * 16 14 12 18 18 H 1.48495 * 109.47126 * 209.99610 * 16 14 12 19 19 H 1.48500 * 109.47220 * 329.99798 * 16 14 12 20 20 C 1.46900 * 111.00070 * 166.40064 * 10 9 7 21 21 C 1.50697 * 109.47705 * 293.95902 * 20 10 9 22 22 C 1.38673 * 120.41785 * 269.72561 * 21 20 10 23 23 C 1.38636 * 118.41735 * 179.78029 * 22 21 20 24 24 C 1.38221 * 119.15994 * 0.46616 * 23 22 21 25 25 N 1.31860 * 120.76621 * 359.77060 * 24 23 22 26 26 C 1.31877 * 121.72355 * 0.02562 * 25 24 23 27 27 H 1.08999 * 109.46764 * 274.31645 * 1 2 3 28 28 H 1.08996 * 109.46796 * 34.31324 * 1 2 3 29 29 H 1.08998 * 109.46827 * 154.31173 * 1 2 3 30 30 H 1.08994 * 109.47801 * 236.49966 * 9 7 4 31 31 H 1.09004 * 109.46669 * 356.49871 * 9 7 4 32 32 H 1.09006 * 109.46836 * 284.80296 * 11 10 9 33 33 H 1.09000 * 109.47302 * 44.79337 * 11 10 9 34 34 H 0.97000 * 120.00291 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.46787 * 53.96030 * 20 10 9 36 36 H 1.09004 * 109.47162 * 173.95620 * 20 10 9 37 37 H 1.07991 * 120.79174 * 0.02562 * 22 21 20 38 38 H 1.07996 * 120.41742 * 180.21758 * 23 22 21 39 39 H 1.08005 * 119.61811 * 179.75330 * 24 23 22 40 40 H 1.08009 * 119.61800 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2365 -1.1211 -0.7648 5 1 3.1716 -0.8753 -1.2682 6 17 1.2022 -2.3407 -1.5978 7 6 2.2364 -1.1210 0.7651 8 1 3.1716 -0.8752 1.2684 9 6 1.3588 -2.1561 1.4716 10 7 2.2078 -3.0714 2.2458 11 6 2.9938 -3.9384 1.3579 12 6 4.1041 -4.5874 2.1434 13 1 4.2268 -4.3618 3.1924 14 6 4.9635 -5.4691 1.5228 15 7 4.8139 -5.7441 0.2454 16 14 6.3402 -6.2731 2.4963 17 1 5.8530 -7.5475 3.0827 18 1 7.4876 -6.5495 1.5951 19 1 6.7743 -5.3613 3.5851 20 6 1.4051 -3.8675 3.1837 21 6 0.8083 -2.9612 4.2294 22 6 1.4919 -2.7036 5.4081 23 6 0.9064 -1.8600 6.3395 24 6 -0.3347 -1.3153 6.0684 25 7 -0.9580 -1.5863 4.9385 26 6 -0.4296 -2.3810 4.0283 27 1 -0.3633 0.0773 1.0248 28 1 -0.3633 0.8488 -0.5793 29 1 -0.3633 -0.9261 -0.4455 30 1 0.6661 -1.6481 2.1424 31 1 0.7963 -2.7226 0.7295 32 1 2.3477 -4.7090 0.9374 33 1 3.4199 -3.3417 0.5514 34 1 5.4183 -6.3647 -0.1911 35 1 0.6056 -4.3715 2.6406 36 1 2.0406 -4.6101 3.6664 37 1 2.4591 -3.1465 5.5944 38 1 1.4119 -1.6345 7.2668 39 1 -0.7994 -0.6603 6.7905 40 1 -0.9699 -2.5795 3.1144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891457888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:39 Heat of formation + Delta-G solvation = 53.613004 kcal Electronic energy + Delta-G solvation = -21627.538410 eV Core-core repulsion = 18468.845964 eV Total energy + Delta-G solvation = -3158.692446 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.02115 -38.44364 -36.17357 -35.01883 -32.83666 -32.15871 -31.21883 -28.60319 -27.56185 -26.65165 -24.12943 -23.28652 -21.95729 -21.10692 -20.49814 -18.94182 -16.89040 -16.50047 -16.18345 -15.98841 -15.10513 -14.94325 -14.30512 -14.21995 -13.70601 -13.43247 -13.14781 -13.09072 -12.85638 -12.77079 -12.25585 -11.95594 -11.80856 -11.69357 -11.32890 -11.14654 -10.93850 -10.75359 -10.67479 -10.53199 -10.34738 -9.97839 -9.54701 -9.51872 -9.32360 -9.27230 -9.18570 -8.71850 -8.43138 -7.29383 -6.02230 -4.04357 1.30915 1.52703 2.49076 3.29502 3.36616 3.39450 3.76814 3.99196 4.40854 4.60204 4.68992 4.74207 5.02298 5.04031 5.11338 5.23701 5.27605 5.33173 5.34709 5.43318 5.68869 5.75757 5.83027 5.88596 5.91010 5.95978 6.04459 6.08328 6.18913 6.32132 6.33893 6.41809 6.56061 6.70087 6.91351 7.26934 7.37190 7.78696 8.07453 8.12912 8.16280 8.51745 9.03309 9.59780 11.07684 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.009400 B = 0.007108 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.879740 B = 3938.227066 C = 6403.865591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.149 4.149 3 H 0.111 0.889 4 C -0.075 4.075 5 H 0.133 0.867 6 Cl -0.137 7.137 7 C -0.112 4.112 8 H 0.123 0.877 9 C 0.072 3.928 10 N -0.528 5.528 11 C 0.197 3.803 12 C -0.510 4.510 13 H 0.061 0.939 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.101 3.899 21 C -0.109 4.109 22 C -0.057 4.057 23 C -0.175 4.175 24 C 0.081 3.919 25 N -0.489 5.489 26 C 0.095 3.905 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.044 0.956 32 H -0.007 1.007 33 H 0.037 0.963 34 H 0.261 0.739 35 H 0.033 0.967 36 H 0.096 0.904 37 H 0.136 0.864 38 H 0.129 0.871 39 H 0.148 0.852 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.314 10.019 4.461 13.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.168 4.168 3 H 0.129 0.871 4 C -0.118 4.118 5 H 0.151 0.849 6 Cl -0.110 7.110 7 C -0.131 4.131 8 H 0.140 0.860 9 C -0.056 4.056 10 N -0.252 5.252 11 C 0.073 3.927 12 C -0.548 4.548 13 H 0.080 0.920 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.028 4.028 21 C -0.112 4.112 22 C -0.083 4.083 23 C -0.195 4.195 24 C -0.076 4.076 25 N -0.198 5.198 26 C -0.062 4.062 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.011 0.989 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.114 0.886 37 H 0.154 0.846 38 H 0.147 0.853 39 H 0.166 0.834 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.799 10.453 4.343 14.337 hybrid contribution 1.259 -1.386 -0.009 1.872 sum -7.540 9.067 4.334 12.564 Atomic orbital electron populations 1.21424 0.92370 1.02817 1.02071 1.22842 0.96365 0.94313 1.03246 0.87080 1.25156 0.97266 0.94690 0.94731 0.84910 1.98666 1.71617 1.60569 1.80149 1.22764 1.01867 0.97586 0.90874 0.85957 1.21754 0.94132 0.93780 0.95953 1.62134 1.22627 1.20961 1.19526 1.19730 0.91578 0.90152 0.91281 1.21159 1.12689 1.24367 0.96629 0.92046 1.24963 0.97792 0.96772 0.94882 1.69964 1.38233 1.35404 1.09716 0.86587 0.81825 0.79652 0.79865 1.20800 1.21320 1.19868 1.20915 0.95934 0.93633 0.92303 1.21105 0.95071 0.98688 0.96295 1.21562 0.99288 0.95078 0.92380 1.22111 0.97260 0.99373 1.00722 1.22612 0.92529 0.98073 0.94357 1.67630 1.35725 1.14076 1.02322 1.22637 0.93036 0.93127 0.97436 0.91917 0.92382 0.91249 0.91292 0.93828 0.98934 0.94485 0.92970 0.94851 0.88581 0.84584 0.85259 0.83434 0.83479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 9.09 37.16 0.34 -1.22 16 2 C -0.15 -1.92 6.41 -90.62 -0.58 -2.50 16 3 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 4 C -0.07 -1.14 6.89 -26.74 -0.18 -1.32 16 5 H 0.13 1.89 8.14 -51.93 -0.42 1.47 16 6 Cl -0.14 -2.28 25.37 -51.86 -1.32 -3.60 16 7 C -0.11 -1.79 4.85 -90.62 -0.44 -2.23 16 8 H 0.12 2.08 8.14 -51.93 -0.42 1.66 16 9 C 0.07 1.24 4.07 -3.83 -0.02 1.22 16 10 N -0.53 -10.56 4.42 -237.52 -1.05 -11.61 16 11 C 0.20 4.84 4.59 -4.98 -0.02 4.82 16 12 C -0.51 -13.63 8.42 -34.44 -0.29 -13.92 16 13 H 0.06 1.62 7.57 -52.49 -0.40 1.22 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 15 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 16 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 C 0.10 1.82 4.99 -4.98 -0.02 1.80 16 21 C -0.11 -1.71 4.93 -104.48 -0.52 -2.22 16 22 C -0.06 -0.81 9.86 -39.27 -0.39 -1.20 16 23 C -0.17 -2.14 10.11 -39.44 -0.40 -2.54 16 24 C 0.08 1.03 11.18 -17.55 -0.20 0.83 16 25 N -0.49 -7.21 10.36 -13.25 -0.14 -7.35 16 26 C 0.09 1.41 9.04 -17.55 -0.16 1.25 16 27 H 0.06 0.75 7.83 -51.93 -0.41 0.34 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.91 6.12 -51.93 -0.32 0.59 16 30 H 0.07 1.11 4.89 -51.93 -0.25 0.86 16 31 H 0.04 0.79 6.00 -51.93 -0.31 0.48 16 32 H -0.01 -0.20 8.06 -51.93 -0.42 -0.61 16 33 H 0.04 0.97 6.97 -51.93 -0.36 0.61 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 36 H 0.10 1.88 7.03 -51.93 -0.36 1.51 16 37 H 0.14 1.91 8.06 -52.49 -0.42 1.48 16 38 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 39 H 0.15 1.41 8.06 -52.48 -0.42 0.98 16 40 H 0.15 2.03 7.78 -52.48 -0.41 1.62 16 LS Contribution 339.56 15.07 5.12 5.12 Total: -1.00 -29.45 339.56 -10.40 -39.85 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -5.75 Total: 2.51 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -2.97 Total: -15.76 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: -0.45 Total: -44.19 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -1.32 Total: -3.60 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.45 -10.40 -39.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891457888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.466 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds