Wall clock time and date at job start Tue Mar 31 2020 07:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 115.56385 * 2 1 4 4 C 1.52998 * 117.49880 * 214.30368 * 2 1 3 5 5 H 1.09006 * 117.49937 * 145.01720 * 4 2 1 6 6 Cl 1.80306 * 117.49847 * 0.02562 * 4 2 1 7 7 C 1.52990 * 60.00298 * 252.51562 * 4 2 1 8 8 H 1.09006 * 117.49630 * 252.50838 * 7 4 2 9 9 C 1.52998 * 117.50280 * 107.49154 * 7 4 2 10 10 N 1.46896 * 109.47414 * 116.49179 * 9 7 4 11 11 C 1.46894 * 111.00623 * 290.36306 * 10 9 7 12 12 C 1.50699 * 109.47623 * 164.80330 * 11 10 9 13 13 H 1.07997 * 119.99834 * 358.78627 * 12 11 10 14 14 C 1.37877 * 119.99905 * 178.79707 * 12 11 10 15 15 N 1.31512 * 120.00476 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99760 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47100 * 89.99452 * 16 14 12 18 18 H 1.48495 * 109.47126 * 209.99610 * 16 14 12 19 19 H 1.48500 * 109.47220 * 329.99798 * 16 14 12 20 20 C 1.46900 * 111.00070 * 166.40064 * 10 9 7 21 21 C 1.50697 * 109.47705 * 293.95902 * 20 10 9 22 22 C 1.38673 * 120.41785 * 269.72561 * 21 20 10 23 23 C 1.38636 * 118.41735 * 179.78029 * 22 21 20 24 24 C 1.38221 * 119.15994 * 0.46616 * 23 22 21 25 25 N 1.31860 * 120.76621 * 359.77060 * 24 23 22 26 26 C 1.31877 * 121.72355 * 0.02562 * 25 24 23 27 27 H 1.08999 * 109.46764 * 274.31645 * 1 2 3 28 28 H 1.08996 * 109.46796 * 34.31324 * 1 2 3 29 29 H 1.08998 * 109.46827 * 154.31173 * 1 2 3 30 30 H 1.08994 * 109.47801 * 236.49966 * 9 7 4 31 31 H 1.09004 * 109.46669 * 356.49871 * 9 7 4 32 32 H 1.09006 * 109.46836 * 284.80296 * 11 10 9 33 33 H 1.09000 * 109.47302 * 44.79337 * 11 10 9 34 34 H 0.97000 * 120.00291 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.46787 * 53.96030 * 20 10 9 36 36 H 1.09004 * 109.47162 * 173.95620 * 20 10 9 37 37 H 1.07991 * 120.79174 * 0.02562 * 22 21 20 38 38 H 1.07996 * 120.41742 * 180.21758 * 23 22 21 39 39 H 1.08005 * 119.61811 * 179.75330 * 24 23 22 40 40 H 1.08009 * 119.61800 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2365 -1.1211 -0.7648 5 1 3.1716 -0.8753 -1.2682 6 17 1.2022 -2.3407 -1.5978 7 6 2.2364 -1.1210 0.7651 8 1 3.1716 -0.8752 1.2684 9 6 1.3588 -2.1561 1.4716 10 7 2.2078 -3.0714 2.2458 11 6 2.9938 -3.9384 1.3579 12 6 4.1041 -4.5874 2.1434 13 1 4.2268 -4.3618 3.1924 14 6 4.9635 -5.4691 1.5228 15 7 4.8139 -5.7441 0.2454 16 14 6.3402 -6.2731 2.4963 17 1 5.8530 -7.5475 3.0827 18 1 7.4876 -6.5495 1.5951 19 1 6.7743 -5.3613 3.5851 20 6 1.4051 -3.8675 3.1837 21 6 0.8083 -2.9612 4.2294 22 6 1.4919 -2.7036 5.4081 23 6 0.9064 -1.8600 6.3395 24 6 -0.3347 -1.3153 6.0684 25 7 -0.9580 -1.5863 4.9385 26 6 -0.4296 -2.3810 4.0283 27 1 -0.3633 0.0773 1.0248 28 1 -0.3633 0.8488 -0.5793 29 1 -0.3633 -0.9261 -0.4455 30 1 0.6661 -1.6481 2.1424 31 1 0.7963 -2.7226 0.7295 32 1 2.3477 -4.7090 0.9374 33 1 3.4199 -3.3417 0.5514 34 1 5.4183 -6.3647 -0.1911 35 1 0.6056 -4.3715 2.6406 36 1 2.0406 -4.6101 3.6664 37 1 2.4591 -3.1465 5.5944 38 1 1.4119 -1.6345 7.2668 39 1 -0.7994 -0.6603 6.7905 40 1 -0.9699 -2.5795 3.1144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891457888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:39 Heat of formation + Delta-G solvation = 37.074303 kcal Electronic energy + Delta-G solvation = -21628.255582 eV Core-core repulsion = 18468.845964 eV Total energy + Delta-G solvation = -3159.409618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.16328 -39.70880 -37.64745 -36.29502 -34.76002 -33.43691 -32.43091 -29.85991 -29.20450 -28.03149 -25.81509 -24.38891 -23.49320 -22.37362 -21.84541 -20.23680 -18.50556 -17.96663 -17.46746 -17.14326 -16.73151 -16.30795 -15.88700 -15.58982 -15.01273 -14.69137 -14.51160 -14.28386 -14.17102 -13.93905 -13.84263 -13.34454 -13.23498 -12.97965 -12.89407 -12.74580 -12.50057 -12.37899 -12.21182 -11.97717 -11.76626 -11.67628 -11.24055 -10.73539 -10.64840 -10.61097 -10.50704 -10.33168 -9.86682 -8.97868 -8.14418 -6.24175 0.22822 0.42069 1.26018 1.41952 1.42626 1.53588 2.42065 2.58413 2.86839 3.17893 3.33387 3.57213 3.58269 3.80410 3.86391 3.97731 4.05742 4.17130 4.20876 4.35749 4.54154 4.55072 4.60646 4.68970 4.73358 4.80162 4.81974 4.92922 4.96185 5.09213 5.14854 5.26677 5.29214 5.38913 5.41405 5.52951 5.70437 5.84737 6.12661 6.34669 6.65108 6.92414 7.06464 7.45120 8.95476 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.009400 B = 0.007108 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.879740 B = 3938.227066 C = 6403.865591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.112 4.112 3 H 0.141 0.859 4 C -0.088 4.088 5 H 0.140 0.860 6 Cl -0.155 7.155 7 C -0.136 4.136 8 H 0.110 0.890 9 C 0.080 3.920 10 N -0.530 5.530 11 C 0.220 3.780 12 C -0.520 4.520 13 H 0.063 0.937 14 C 0.005 3.995 15 N -0.931 5.931 16 Si 0.961 3.039 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.263 1.263 20 C 0.106 3.894 21 C -0.124 4.124 22 C -0.068 4.068 23 C -0.163 4.163 24 C 0.084 3.916 25 N -0.504 5.504 26 C 0.091 3.909 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.032 0.968 32 H -0.045 1.045 33 H 0.016 0.984 34 H 0.261 0.739 35 H 0.027 0.973 36 H 0.075 0.925 37 H 0.135 0.865 38 H 0.165 0.835 39 H 0.184 0.816 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.550 11.964 6.527 16.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.131 4.131 3 H 0.158 0.842 4 C -0.131 4.131 5 H 0.157 0.843 6 Cl -0.128 7.128 7 C -0.155 4.155 8 H 0.128 0.872 9 C -0.047 4.047 10 N -0.254 5.254 11 C 0.095 3.905 12 C -0.558 4.558 13 H 0.081 0.919 14 C -0.193 4.193 15 N -0.572 5.572 16 Si 0.786 3.214 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.188 1.188 20 C -0.022 4.022 21 C -0.126 4.126 22 C -0.095 4.095 23 C -0.183 4.183 24 C -0.073 4.073 25 N -0.213 5.213 26 C -0.066 4.066 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.050 0.950 32 H -0.027 1.027 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.046 0.954 36 H 0.094 0.906 37 H 0.153 0.847 38 H 0.182 0.818 39 H 0.201 0.799 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.052 12.411 6.423 16.650 hybrid contribution 1.276 -1.932 -0.576 2.386 sum -7.776 10.479 5.847 14.299 Atomic orbital electron populations 1.21468 0.91457 1.03190 1.02655 1.22997 0.96932 0.94212 0.98925 0.84181 1.25359 0.98121 0.95544 0.94098 0.84252 1.98662 1.72065 1.61651 1.80471 1.22706 1.02059 0.99511 0.91249 0.87157 1.21711 0.94034 0.93334 0.95668 1.62069 1.23910 1.20345 1.19061 1.19266 0.91029 0.89190 0.91064 1.21492 1.13145 1.24400 0.96812 0.91908 1.25817 1.00323 0.97398 0.95775 1.70102 1.39397 1.36244 1.11432 0.85515 0.78558 0.78799 0.78541 1.20132 1.21164 1.18765 1.20776 0.95087 0.93849 0.92496 1.20815 0.95913 0.99569 0.96325 1.21708 0.99442 0.95781 0.92544 1.22440 0.97001 0.97642 1.01183 1.23269 0.92484 0.97522 0.93991 1.67695 1.36204 1.14267 1.03117 1.22618 0.92691 0.93319 0.97949 0.91474 0.89990 0.92617 0.89878 0.94984 1.02722 0.96629 0.92971 0.95443 0.90629 0.84738 0.81785 0.79867 0.83255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.09 71.98 0.65 -2.22 16 2 C -0.11 -2.69 6.41 -10.79 -0.07 -2.76 16 3 H 0.14 2.62 8.14 -2.39 -0.02 2.60 16 4 C -0.09 -2.66 6.89 30.59 0.21 -2.45 16 5 H 0.14 3.97 8.14 -2.38 -0.02 3.95 16 6 Cl -0.16 -5.32 25.37 -2.72 -0.07 -5.39 16 7 C -0.14 -4.36 4.85 -10.80 -0.05 -4.41 16 8 H 0.11 3.79 8.14 -2.38 -0.02 3.77 16 9 C 0.08 2.82 4.07 86.30 0.35 3.17 16 10 N -0.53 -21.97 4.42 -905.39 -4.00 -25.97 16 11 C 0.22 11.37 4.59 85.56 0.39 11.76 16 12 C -0.52 -28.63 8.42 25.60 0.22 -28.41 16 13 H 0.06 3.37 7.57 -2.91 -0.02 3.34 16 14 C 0.01 0.28 5.46 84.66 0.46 0.74 16 15 N -0.93 -55.73 13.29 21.45 0.28 -55.44 16 16 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 17 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 20 C 0.11 4.01 4.99 85.56 0.43 4.43 16 21 C -0.12 -3.85 4.93 -19.77 -0.10 -3.95 16 22 C -0.07 -1.88 9.86 22.47 0.22 -1.65 16 23 C -0.16 -3.47 10.11 22.36 0.23 -3.24 16 24 C 0.08 1.83 11.18 84.68 0.95 2.78 16 25 N -0.50 -13.75 10.36 -195.84 -2.03 -15.78 16 26 C 0.09 2.63 9.04 84.67 0.77 3.40 16 27 H 0.07 1.44 7.83 -2.39 -0.02 1.43 16 28 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.05 1.40 6.12 -2.39 -0.01 1.39 16 30 H 0.08 2.66 4.89 -2.39 -0.01 2.65 16 31 H 0.03 1.21 6.00 -2.39 -0.01 1.20 16 32 H -0.04 -2.61 8.06 -2.38 -0.02 -2.63 16 33 H 0.02 0.87 6.97 -2.39 -0.02 0.85 16 34 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 35 H 0.03 1.04 8.07 -2.39 -0.02 1.02 16 36 H 0.08 3.10 7.03 -2.38 -0.02 3.09 16 37 H 0.13 3.67 8.06 -2.92 -0.02 3.65 16 38 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 39 H 0.18 2.61 8.06 -2.91 -0.02 2.58 16 40 H 0.15 4.11 7.78 -2.91 -0.02 4.08 16 Total: -1.00 -65.18 339.56 1.89 -63.29 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 1.03 Total: 16.37 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 4.65 Total: -22.81 kcal Atomic # 7 Polarization: -91.44 SS G_CDS: -5.75 Total: -97.19 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 17 Polarization: -5.32 SS G_CDS: -0.07 Total: -5.39 kcal Total: -65.18 1.89 -63.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891457888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.364 kcal (2) G-P(sol) polarization free energy of solvation -65.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds