Wall clock time and date at job start Tue Mar 31 2020 07:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 110.99768 * 2 1 4 4 C 1.39740 * 110.99771 * 123.95399 * 2 1 3 5 5 C 1.38770 * 120.04197 * 300.00089 * 4 2 1 6 6 C 1.38762 * 119.86478 * 179.97438 * 5 4 2 7 7 N 1.39739 * 120.02260 * 179.97438 * 6 5 4 8 8 C 1.46508 * 119.99841 * 185.49638 * 7 6 5 9 9 C 1.52991 * 109.46936 * 176.72198 * 8 7 6 10 10 C 1.50695 * 115.55192 * 301.21492 * 9 8 7 11 11 H 1.08002 * 120.00080 * 114.60719 * 10 9 8 12 12 C 1.37880 * 120.00150 * 294.59865 * 10 9 8 13 13 N 1.31515 * 120.00126 * 173.15768 * 12 10 9 14 14 Si 1.86799 * 119.99922 * 353.16739 * 12 10 9 15 15 H 1.48496 * 109.47290 * 90.29597 * 14 12 10 16 16 H 1.48495 * 109.47310 * 210.29748 * 14 12 10 17 17 H 1.48503 * 109.46948 * 330.29787 * 14 12 10 18 18 C 1.53009 * 117.49966 * 86.88333 * 9 8 7 19 19 C 1.52998 * 117.49899 * 155.54123 * 9 8 7 20 20 C 1.38961 * 119.95006 * 0.25400 * 6 5 4 21 21 C 1.38164 * 120.07635 * 359.48826 * 20 6 5 22 22 C 1.38242 * 120.13445 * 0.51520 * 21 20 6 23 23 Cl 1.73601 * 119.97481 * 179.72247 * 22 21 20 24 24 H 1.08998 * 109.47283 * 296.04304 * 1 2 3 25 25 H 1.09000 * 109.46786 * 56.04788 * 1 2 3 26 26 H 1.08996 * 109.47002 * 176.04496 * 1 2 3 27 27 H 1.09004 * 109.46948 * 183.95069 * 3 2 1 28 28 H 1.08991 * 109.47529 * 303.95159 * 3 2 1 29 29 H 1.09003 * 109.47193 * 63.95484 * 3 2 1 30 30 H 1.07996 * 120.06392 * 0.02562 * 5 4 2 31 31 H 0.96998 * 120.00449 * 5.49687 * 7 6 5 32 32 H 1.08999 * 109.46716 * 56.72150 * 8 7 6 33 33 H 1.08995 * 109.46620 * 296.72505 * 8 7 6 34 34 H 0.97003 * 119.99499 * 179.97438 * 13 12 10 35 35 H 1.08996 * 117.50057 * 214.99846 * 18 9 8 36 36 H 1.08999 * 117.49640 * 0.02562 * 18 9 8 37 37 H 1.09007 * 117.49920 * 359.97438 * 19 9 8 38 38 H 1.09002 * 117.49870 * 144.96984 * 19 9 8 39 39 H 1.07995 * 119.95930 * 179.74174 * 20 6 5 40 40 H 1.07992 * 119.93368 * 180.25304 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9698 -0.7287 1.0822 5 6 1.6580 -0.3482 2.3797 6 6 2.1568 -1.0747 3.4516 7 7 1.8453 -0.6942 4.7596 8 6 2.4673 -1.3858 5.8915 9 6 2.0223 -0.7271 7.1986 10 6 2.3512 0.7374 7.3333 11 1 1.5565 1.4674 7.3787 12 6 3.6666 1.1454 7.3987 13 7 3.9591 2.4275 7.3804 14 14 5.0333 -0.1228 7.5129 15 1 5.4817 -0.4918 6.1462 16 1 6.1755 0.4472 8.2715 17 1 4.5292 -1.3322 8.2118 18 6 0.7181 -1.2191 7.8295 19 6 2.0616 -1.5796 8.4685 20 6 2.9709 -2.1774 3.2234 21 6 3.2757 -2.5574 1.9304 22 6 2.7806 -1.8360 0.8601 23 17 3.1720 -2.3129 -0.7626 24 1 -0.3634 0.4512 0.9233 25 1 -0.3633 0.5740 -0.8525 26 1 -0.3633 -1.0252 -0.0709 27 1 3.0828 1.3432 -0.0708 28 1 1.5899 1.9163 -0.8524 29 1 1.7044 1.8724 0.9233 30 1 1.0277 0.5111 2.5549 31 1 1.2173 0.0278 4.9182 32 1 3.5520 -1.3232 5.8038 33 1 2.1625 -2.4323 5.8897 34 1 4.8846 2.7145 7.4268 35 1 0.0981 -0.4836 8.3420 36 1 0.1774 -2.0124 7.3135 37 1 2.4040 -2.6100 8.3726 38 1 2.3258 -1.0813 9.4012 39 1 3.3626 -2.7405 4.0576 40 1 3.9053 -3.4172 1.7557 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902254501.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:04 Heat of formation + Delta-G solvation = 55.843202 kcal Electronic energy + Delta-G solvation = -21399.701766 eV Core-core repulsion = 18241.106029 eV Total energy + Delta-G solvation = -3158.595737 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.82691 -37.77007 -36.54166 -36.04251 -33.83448 -32.25598 -30.06433 -28.92002 -27.57524 -26.22497 -25.13255 -24.30867 -22.10265 -21.63983 -20.35014 -19.22629 -17.30813 -16.76042 -16.04465 -15.65027 -15.19444 -15.02555 -14.95101 -14.29998 -13.81306 -13.65922 -13.43201 -13.33852 -12.94107 -12.63783 -12.32637 -12.28325 -12.14980 -11.92684 -11.69926 -11.40328 -11.25886 -11.11654 -10.76177 -10.65985 -10.40239 -10.32681 -9.66907 -9.43120 -9.15928 -8.79162 -8.64048 -8.60675 -8.50359 -6.94034 -6.24485 -4.27234 1.44860 1.69996 2.63643 3.18722 3.30341 3.33323 3.78314 3.92938 3.97648 4.30758 4.81374 5.02262 5.11086 5.14040 5.33511 5.39074 5.47641 5.49361 5.55453 5.62208 5.77002 5.83608 5.84441 5.86580 5.91972 6.00732 6.03736 6.21050 6.34934 6.38623 6.48671 6.53327 6.60418 6.76866 6.85659 6.87711 7.00375 7.37323 7.58348 7.78282 8.25798 8.35220 8.76764 9.38719 10.86788 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.018580 B = 0.004365 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.616729 B = 6413.497464 C = 6529.898141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.504 5.504 3 C 0.029 3.971 4 C 0.142 3.858 5 C -0.223 4.223 6 C 0.246 3.754 7 N -0.710 5.710 8 C 0.154 3.846 9 C -0.017 4.017 10 C -0.490 4.490 11 H 0.076 0.924 12 C 0.085 3.915 13 N -0.891 5.891 14 Si 0.866 3.134 15 H -0.277 1.277 16 H -0.291 1.291 17 H -0.250 1.250 18 C -0.180 4.180 19 C -0.185 4.185 20 C -0.199 4.199 21 C -0.056 4.056 22 C -0.086 4.086 23 Cl -0.079 7.079 24 H 0.032 0.968 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.124 0.876 31 H 0.408 0.592 32 H 0.053 0.947 33 H 0.041 0.959 34 H 0.266 0.734 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.127 0.873 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.198 -7.761 -11.808 14.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.225 5.225 3 C -0.118 4.118 4 C 0.047 3.953 5 C -0.248 4.248 6 C 0.137 3.863 7 N -0.334 5.334 8 C 0.030 3.970 9 C -0.018 4.018 10 C -0.527 4.527 11 H 0.094 0.906 12 C -0.119 4.119 13 N -0.527 5.527 14 Si 0.693 3.307 15 H -0.203 1.203 16 H -0.218 1.218 17 H -0.173 1.173 18 C -0.218 4.218 19 C -0.224 4.224 20 C -0.222 4.222 21 C -0.076 4.076 22 C -0.115 4.115 23 Cl -0.051 7.051 24 H 0.051 0.949 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.142 0.858 31 H 0.244 0.756 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.144 0.856 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.780 -7.951 -12.184 15.032 hybrid contribution 0.450 0.158 0.855 0.979 sum -3.331 -7.793 -11.329 14.148 Atomic orbital electron populations 1.22424 0.85988 1.02551 1.00771 1.59687 1.08345 1.14181 1.40273 1.22434 1.01175 0.87314 1.00860 1.18148 0.95483 0.93233 0.88429 1.20897 1.08960 1.03626 0.91362 1.17852 0.91531 0.91591 0.85366 1.44817 1.48180 1.39236 1.01135 1.21107 0.96566 0.93321 0.85999 1.19562 0.97742 0.95699 0.88784 1.20183 0.93233 0.87716 1.51544 0.90586 1.24908 0.98590 0.94911 0.93518 1.69892 1.19352 1.14521 1.48933 0.87043 0.81803 0.83225 0.78603 1.20292 1.21793 1.17319 1.22816 0.90905 1.02553 1.05487 1.23030 1.01036 0.98985 0.99301 1.20607 1.05224 0.99694 0.96707 1.20648 0.97864 0.98450 0.90665 1.20327 1.06324 0.99466 0.85420 1.98299 1.93235 1.91336 1.22184 0.94925 0.91099 0.91232 0.91101 0.91075 0.94743 0.85797 0.75585 0.92906 0.94068 0.92415 0.89662 0.90884 0.91155 0.89294 0.85556 0.85349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.34 60.07 0.56 0.89 16 2 N -0.50 -6.65 4.38 -186.84 -0.82 -7.46 16 3 C 0.03 0.35 9.38 60.06 0.56 0.91 16 4 C 0.14 2.13 4.73 -83.76 -0.40 1.73 16 5 C -0.22 -3.50 8.42 -39.19 -0.33 -3.83 16 6 C 0.25 4.18 6.64 -83.79 -0.56 3.62 16 7 N -0.71 -12.97 5.57 -58.64 -0.33 -13.30 16 8 C 0.15 2.97 4.42 -4.04 -0.02 2.95 16 9 C -0.02 -0.35 0.90 -155.66 -0.14 -0.49 16 10 C -0.49 -12.54 8.95 -34.44 -0.31 -12.85 16 11 H 0.08 2.14 8.06 -52.49 -0.42 1.72 16 12 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 13 N -0.89 -25.90 13.96 55.43 0.77 -25.13 16 14 Si 0.87 20.40 25.07 -169.99 -4.26 16.14 16 15 H -0.28 -6.52 6.92 56.52 0.39 -6.13 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.25 -5.45 5.75 56.52 0.33 -5.13 16 18 C -0.18 -3.33 9.94 -26.69 -0.27 -3.60 16 19 C -0.19 -3.60 8.02 -26.69 -0.21 -3.81 16 20 C -0.20 -3.16 9.31 -39.34 -0.37 -3.53 16 21 C -0.06 -0.82 9.81 -39.61 -0.39 -1.21 16 22 C -0.09 -1.28 6.34 -39.29 -0.25 -1.53 16 23 Cl -0.08 -1.09 28.43 -51.86 -1.47 -2.57 16 24 H 0.03 0.36 7.12 -51.93 -0.37 -0.01 16 25 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 29 H 0.03 0.42 7.34 -51.93 -0.38 0.04 16 30 H 0.12 1.86 7.02 -52.49 -0.37 1.49 16 31 H 0.41 7.57 8.25 -40.82 -0.34 7.23 16 32 H 0.05 1.10 4.91 -51.93 -0.26 0.85 16 33 H 0.04 0.71 7.88 -51.93 -0.41 0.30 16 34 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 35 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 38 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 39 H 0.13 1.92 6.74 -52.49 -0.35 1.57 16 40 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 337.63 15.07 5.09 5.09 Total: -1.00 -27.68 337.63 -9.15 -36.83 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -5.92 Total: 8.96 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -2.21 Total: -18.56 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: -0.37 Total: -45.90 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.26 Total: 16.14 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -1.47 Total: -2.57 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.68 -9.15 -36.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902254501.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.670 kcal (2) G-P(sol) polarization free energy of solvation -27.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds