Wall clock time and date at job start Tue Mar 31 2020 07:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 110.99768 * 2 1 4 4 C 1.39740 * 110.99771 * 123.95399 * 2 1 3 5 5 C 1.38770 * 120.04197 * 300.00089 * 4 2 1 6 6 C 1.38762 * 119.86478 * 179.97438 * 5 4 2 7 7 N 1.39739 * 120.02260 * 179.97438 * 6 5 4 8 8 C 1.46508 * 119.99841 * 185.49638 * 7 6 5 9 9 C 1.52991 * 109.46936 * 176.72198 * 8 7 6 10 10 C 1.50695 * 115.55192 * 301.21492 * 9 8 7 11 11 H 1.08002 * 120.00080 * 114.60719 * 10 9 8 12 12 C 1.37880 * 120.00150 * 294.59865 * 10 9 8 13 13 N 1.31515 * 120.00126 * 173.15768 * 12 10 9 14 14 Si 1.86799 * 119.99922 * 353.16739 * 12 10 9 15 15 H 1.48496 * 109.47290 * 90.29597 * 14 12 10 16 16 H 1.48495 * 109.47310 * 210.29748 * 14 12 10 17 17 H 1.48503 * 109.46948 * 330.29787 * 14 12 10 18 18 C 1.53009 * 117.49966 * 86.88333 * 9 8 7 19 19 C 1.52998 * 117.49899 * 155.54123 * 9 8 7 20 20 C 1.38961 * 119.95006 * 0.25400 * 6 5 4 21 21 C 1.38164 * 120.07635 * 359.48826 * 20 6 5 22 22 C 1.38242 * 120.13445 * 0.51520 * 21 20 6 23 23 Cl 1.73601 * 119.97481 * 179.72247 * 22 21 20 24 24 H 1.08998 * 109.47283 * 296.04304 * 1 2 3 25 25 H 1.09000 * 109.46786 * 56.04788 * 1 2 3 26 26 H 1.08996 * 109.47002 * 176.04496 * 1 2 3 27 27 H 1.09004 * 109.46948 * 183.95069 * 3 2 1 28 28 H 1.08991 * 109.47529 * 303.95159 * 3 2 1 29 29 H 1.09003 * 109.47193 * 63.95484 * 3 2 1 30 30 H 1.07996 * 120.06392 * 0.02562 * 5 4 2 31 31 H 0.96998 * 120.00449 * 5.49687 * 7 6 5 32 32 H 1.08999 * 109.46716 * 56.72150 * 8 7 6 33 33 H 1.08995 * 109.46620 * 296.72505 * 8 7 6 34 34 H 0.97003 * 119.99499 * 179.97438 * 13 12 10 35 35 H 1.08996 * 117.50057 * 214.99846 * 18 9 8 36 36 H 1.08999 * 117.49640 * 0.02562 * 18 9 8 37 37 H 1.09007 * 117.49920 * 359.97438 * 19 9 8 38 38 H 1.09002 * 117.49870 * 144.96984 * 19 9 8 39 39 H 1.07995 * 119.95930 * 179.74174 * 20 6 5 40 40 H 1.07992 * 119.93368 * 180.25304 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9698 -0.7287 1.0822 5 6 1.6580 -0.3482 2.3797 6 6 2.1568 -1.0747 3.4516 7 7 1.8453 -0.6942 4.7596 8 6 2.4673 -1.3858 5.8915 9 6 2.0223 -0.7271 7.1986 10 6 2.3512 0.7374 7.3333 11 1 1.5565 1.4674 7.3787 12 6 3.6666 1.1454 7.3987 13 7 3.9591 2.4275 7.3804 14 14 5.0333 -0.1228 7.5129 15 1 5.4817 -0.4918 6.1462 16 1 6.1755 0.4472 8.2715 17 1 4.5292 -1.3322 8.2118 18 6 0.7181 -1.2191 7.8295 19 6 2.0616 -1.5796 8.4685 20 6 2.9709 -2.1774 3.2234 21 6 3.2757 -2.5574 1.9304 22 6 2.7806 -1.8360 0.8601 23 17 3.1720 -2.3129 -0.7626 24 1 -0.3634 0.4512 0.9233 25 1 -0.3633 0.5740 -0.8525 26 1 -0.3633 -1.0252 -0.0709 27 1 3.0828 1.3432 -0.0708 28 1 1.5899 1.9163 -0.8524 29 1 1.7044 1.8724 0.9233 30 1 1.0277 0.5111 2.5549 31 1 1.2173 0.0278 4.9182 32 1 3.5520 -1.3232 5.8038 33 1 2.1625 -2.4323 5.8897 34 1 4.8846 2.7145 7.4268 35 1 0.0981 -0.4836 8.3420 36 1 0.1774 -2.0124 7.3135 37 1 2.4040 -2.6100 8.3726 38 1 2.3258 -1.0813 9.4012 39 1 3.3626 -2.7405 4.0576 40 1 3.9053 -3.4172 1.7557 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902254501.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:04 Heat of formation + Delta-G solvation = 40.061497 kcal Electronic energy + Delta-G solvation = -21400.386112 eV Core-core repulsion = 18241.106029 eV Total energy + Delta-G solvation = -3159.280083 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.99228 -39.21774 -37.75865 -37.19557 -35.12239 -34.28310 -31.25242 -30.16186 -28.49972 -28.00202 -26.63969 -25.46581 -23.37479 -23.04318 -21.57982 -20.91451 -18.66474 -18.31418 -17.36167 -16.96192 -16.86759 -16.18019 -16.02937 -15.65934 -15.26125 -15.01604 -14.79685 -14.67354 -14.49216 -14.04550 -13.80610 -13.25212 -13.21986 -13.06153 -12.93636 -12.87629 -12.62255 -12.38131 -12.35210 -12.15515 -12.08799 -11.51879 -11.43489 -10.98986 -10.75968 -10.51794 -10.32507 -9.80796 -9.54860 -8.31789 -8.23792 -6.36374 0.27763 0.49269 1.31926 1.38057 1.48293 1.48761 2.34879 2.47912 2.73765 2.88244 3.03380 3.36144 3.87752 4.02878 4.13864 4.27970 4.30170 4.38449 4.41140 4.44557 4.49211 4.55220 4.62162 4.67265 4.71438 4.83106 4.90867 4.96304 4.98086 5.06070 5.10273 5.27385 5.31265 5.34485 5.50634 5.63898 5.67817 5.89552 6.25754 6.26898 6.45764 6.69702 6.87358 7.32375 8.83172 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.018580 B = 0.004365 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.616729 B = 6413.497464 C = 6529.898141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.510 5.510 3 C 0.030 3.970 4 C 0.141 3.859 5 C -0.228 4.228 6 C 0.228 3.772 7 N -0.721 5.721 8 C 0.164 3.836 9 C -0.043 4.043 10 C -0.477 4.477 11 H 0.032 0.968 12 C 0.029 3.971 13 N -0.945 5.945 14 Si 0.922 3.078 15 H -0.276 1.276 16 H -0.302 1.302 17 H -0.217 1.217 18 C -0.161 4.161 19 C -0.178 4.178 20 C -0.206 4.206 21 C -0.052 4.052 22 C -0.094 4.094 23 Cl -0.068 7.068 24 H 0.029 0.971 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.025 0.975 30 H 0.122 0.878 31 H 0.402 0.598 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.263 0.737 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.135 0.865 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.354 -10.473 -12.833 17.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.231 5.231 3 C -0.117 4.117 4 C 0.045 3.955 5 C -0.254 4.254 6 C 0.120 3.880 7 N -0.345 5.345 8 C 0.039 3.961 9 C -0.044 4.044 10 C -0.515 4.515 11 H 0.050 0.950 12 C -0.170 4.170 13 N -0.585 5.585 14 Si 0.747 3.253 15 H -0.202 1.202 16 H -0.230 1.230 17 H -0.139 1.139 18 C -0.199 4.199 19 C -0.216 4.216 20 C -0.229 4.229 21 C -0.072 4.072 22 C -0.123 4.123 23 Cl -0.039 7.039 24 H 0.048 0.952 25 H 0.111 0.889 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.044 0.956 30 H 0.140 0.860 31 H 0.236 0.764 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.153 0.847 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.959 -10.700 -13.227 17.467 hybrid contribution 0.385 1.054 1.073 1.553 sum -3.574 -9.646 -12.154 15.923 Atomic orbital electron populations 1.22484 0.84707 1.02912 1.01590 1.59791 1.09521 1.14521 1.39271 1.22462 1.00764 0.86971 1.01492 1.18314 0.95193 0.93384 0.88586 1.20959 1.09114 1.03623 0.91676 1.18061 0.92488 0.92468 0.84960 1.44769 1.48634 1.39552 1.01579 1.20959 0.95558 0.94580 0.84968 1.19467 1.00773 0.93375 0.90792 1.20329 0.91815 0.89891 1.49455 0.94962 1.25683 1.01172 0.96387 0.93720 1.70048 1.19533 1.16851 1.52055 0.86154 0.78542 0.81938 0.78646 1.20220 1.22956 1.13945 1.22848 0.90254 1.02568 1.04180 1.23072 1.01331 0.99841 0.97380 1.20774 1.05077 0.99481 0.97599 1.20902 0.97484 0.98846 0.89956 1.20551 1.06090 0.99481 0.86225 1.98301 1.93114 1.91183 1.21338 0.95234 0.88947 0.91314 0.91982 0.88679 0.95621 0.85975 0.76353 0.94603 0.91200 0.92813 0.90557 0.87925 0.88112 0.90509 0.84747 0.82930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 9.34 127.69 1.19 1.80 16 2 N -0.51 -12.70 4.38 -745.04 -3.26 -15.96 16 3 C 0.03 0.68 9.38 127.69 1.20 1.87 16 4 C 0.14 4.04 4.73 38.20 0.18 4.22 16 5 C -0.23 -7.07 8.42 22.52 0.19 -6.88 16 6 C 0.23 7.53 6.64 38.18 0.25 7.78 16 7 N -0.72 -25.87 5.57 -339.45 -1.89 -27.76 16 8 C 0.16 5.96 4.42 86.37 0.38 6.34 16 9 C -0.04 -1.74 0.90 -52.93 -0.05 -1.79 16 10 C -0.48 -24.99 8.95 25.60 0.23 -24.76 16 11 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 12 C 0.03 1.58 5.47 84.66 0.46 2.04 16 13 N -0.95 -57.30 13.96 21.45 0.30 -57.00 16 14 Si 0.92 42.05 25.07 68.60 1.72 43.77 16 15 H -0.28 -12.48 6.92 99.48 0.69 -11.79 16 16 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 17 H -0.22 -8.66 5.75 99.48 0.57 -8.09 16 18 C -0.16 -5.57 9.94 30.62 0.30 -5.27 16 19 C -0.18 -6.36 8.02 30.62 0.25 -6.12 16 20 C -0.21 -6.14 9.31 22.43 0.21 -5.94 16 21 C -0.05 -1.39 9.81 22.25 0.22 -1.17 16 22 C -0.09 -2.63 6.34 22.46 0.14 -2.49 16 23 Cl -0.07 -1.73 28.43 -2.72 -0.08 -1.81 16 24 H 0.03 0.62 7.12 -2.39 -0.02 0.60 16 25 H 0.09 1.49 8.12 -2.39 -0.02 1.47 16 26 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.09 1.69 8.12 -2.39 -0.02 1.67 16 29 H 0.03 0.62 7.34 -2.39 -0.02 0.60 16 30 H 0.12 3.72 7.02 -2.91 -0.02 3.70 16 31 H 0.40 15.11 8.25 -92.71 -0.76 14.34 16 32 H 0.04 1.42 4.91 -2.39 -0.01 1.41 16 33 H 0.07 2.14 7.88 -2.39 -0.02 2.12 16 34 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 35 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 36 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 37 H 0.10 3.03 8.14 -2.38 -0.02 3.01 16 38 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 39 H 0.13 3.73 6.74 -2.91 -0.02 3.71 16 40 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -60.87 337.63 2.07 -58.80 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: 0.12 Total: 30.33 kcal Atomic # 6 Polarization: -35.52 SS G_CDS: 5.16 Total: -30.36 kcal Atomic # 7 Polarization: -95.87 SS G_CDS: -4.85 Total: -100.73 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 1.72 Total: 43.77 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.08 Total: -1.81 kcal Total: -60.87 2.07 -58.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902254501.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.857 kcal (2) G-P(sol) polarization free energy of solvation -60.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds