Wall clock time and date at job start Tue Mar 31 2020 07:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46823 * 2 1 4 4 C 1.50694 * 109.46784 * 240.00075 * 2 1 3 5 5 H 1.08000 * 120.00054 * 239.99734 * 4 2 1 6 6 C 1.37877 * 120.00318 * 60.00037 * 4 2 1 7 7 N 1.31511 * 119.99877 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99974 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46968 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46727 * 119.99963 * 8 6 4 11 11 H 1.48493 * 109.47133 * 239.99616 * 8 6 4 12 12 N 1.46490 * 109.47211 * 119.99913 * 2 1 3 13 13 C 1.34785 * 120.00020 * 275.00064 * 12 2 1 14 14 O 1.21580 * 120.00103 * 359.97438 * 13 12 2 15 15 N 1.34774 * 119.99950 * 180.02562 * 13 12 2 16 16 C 1.46497 * 120.00138 * 185.05408 * 15 13 12 17 17 C 1.53000 * 109.47342 * 296.00114 * 16 15 13 18 18 C 1.53006 * 109.47195 * 56.00131 * 16 15 13 19 19 C 1.52995 * 117.50356 * 185.00406 * 18 16 15 20 20 C 1.52998 * 117.50142 * 116.37825 * 18 16 15 21 21 C 1.52999 * 109.47245 * 175.99927 * 16 15 13 22 22 F 1.39900 * 109.47336 * 302.01526 * 21 16 15 23 23 F 1.39897 * 109.47263 * 62.01901 * 21 16 15 24 24 F 1.39903 * 109.46946 * 182.01835 * 21 16 15 25 25 H 1.09001 * 109.47291 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47134 * 300.00276 * 1 2 3 27 27 H 1.08999 * 109.47331 * 59.99609 * 1 2 3 28 28 H 0.97000 * 119.99641 * 180.02562 * 7 6 4 29 29 H 0.97003 * 120.00123 * 94.99750 * 12 2 1 30 30 H 0.97006 * 119.99990 * 5.05337 * 15 13 12 31 31 H 1.08998 * 109.47393 * 179.97438 * 17 16 15 32 32 H 1.09001 * 109.47326 * 300.00015 * 17 16 15 33 33 H 1.09004 * 109.46906 * 59.99471 * 17 16 15 34 34 H 1.09007 * 115.55462 * 330.69135 * 18 16 15 35 35 H 1.08991 * 117.50222 * 145.01938 * 19 18 16 36 36 H 1.09000 * 117.49558 * 359.97438 * 19 18 16 37 37 H 1.09001 * 117.49811 * 0.02562 * 20 18 16 38 38 H 1.08997 * 117.51665 * 214.97337 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 3.1473 -2.2864 -3.6037 10 1 1.1676 -1.5867 -4.8164 11 1 3.1471 -0.1859 -4.8161 12 7 2.0184 -0.6905 1.1961 13 6 2.1471 -0.0181 2.3571 14 8 1.8584 1.1616 2.4116 15 7 2.5969 -0.6533 3.4574 16 6 2.6322 0.0462 4.7441 17 6 3.6130 1.2176 4.6610 18 6 1.2349 0.5737 5.0764 19 6 1.0858 1.4385 6.3296 20 6 0.5432 0.0080 6.3184 21 6 3.0856 -0.9218 5.8387 22 9 2.2146 -2.0158 5.8838 23 9 4.3814 -1.3686 5.5587 24 9 3.0752 -0.2663 7.0746 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.7081 1.1608 -3.4844 29 1 2.2490 -1.6317 1.1526 30 1 2.8971 -1.5738 3.3974 31 1 3.6390 1.7384 5.6181 32 1 4.6085 0.8419 4.4242 33 1 3.2900 1.9072 3.8811 34 1 0.6083 0.8181 4.2187 35 1 0.3611 2.2519 6.2965 36 1 1.9831 1.6315 6.9176 37 1 1.0838 -0.7395 6.8990 38 1 -0.5385 -0.1196 6.2781 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933583174.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:21 Heat of formation + Delta-G solvation = -148.079989 kcal Electronic energy + Delta-G solvation = -25352.542017 eV Core-core repulsion = 21202.537602 eV Total energy + Delta-G solvation = -4150.004415 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.48165 -47.89404 -47.81583 -39.95263 -37.72650 -35.06233 -34.18800 -32.48095 -30.65600 -28.35053 -26.64349 -25.25607 -23.62643 -22.39687 -21.96225 -20.48319 -19.64298 -18.82379 -18.60615 -18.21200 -17.42471 -15.95746 -15.88337 -15.15632 -15.01701 -14.77295 -14.60546 -14.47267 -14.22814 -14.10030 -13.99041 -13.76929 -13.55431 -13.33839 -12.61513 -12.43508 -12.38010 -12.12438 -11.72662 -11.35627 -11.20239 -11.08649 -10.98659 -10.76439 -10.45651 -10.29711 -10.24350 -10.18148 -9.34914 -9.06409 -8.97050 -8.56474 -7.88685 -6.13547 -4.22305 2.36733 2.91684 3.23280 3.31392 3.34117 3.45961 3.66482 3.80185 3.95679 4.03987 4.31154 4.46743 4.77547 4.88744 4.97504 5.18267 5.20677 5.30171 5.52995 5.64062 5.72977 5.85711 6.03511 6.19432 6.30656 6.56928 6.77522 6.97581 7.08112 7.20318 7.47110 7.62094 7.82365 7.98800 8.15040 8.74032 8.85742 9.25568 9.46719 10.92543 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.028836 B = 0.004021 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.772682 B = 6961.277470 C = 7351.234729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.281 3.719 3 H 0.049 0.951 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.721 5.721 13 C 0.705 3.295 14 O -0.588 6.588 15 N -0.748 5.748 16 C 0.198 3.802 17 C -0.167 4.167 18 C -0.156 4.156 19 C -0.168 4.168 20 C -0.196 4.196 21 C 0.450 3.550 22 F -0.173 7.173 23 F -0.178 7.178 24 F -0.172 7.172 25 H 0.025 0.975 26 H 0.015 0.985 27 H 0.090 0.910 28 H 0.264 0.736 29 H 0.386 0.614 30 H 0.396 0.604 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.139 0.861 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.968 -3.239 17.505 18.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.179 3.821 3 H 0.067 0.933 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.372 5.372 13 C 0.405 3.595 14 O -0.466 6.466 15 N -0.407 5.407 16 C 0.108 3.892 17 C -0.225 4.225 18 C -0.175 4.175 19 C -0.206 4.206 20 C -0.233 4.233 21 C 0.395 3.605 22 F -0.155 7.155 23 F -0.159 7.159 24 F -0.153 7.153 25 H 0.044 0.956 26 H 0.034 0.966 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.218 0.782 30 H 0.230 0.770 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.126 0.874 34 H 0.157 0.843 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.596 -2.040 17.357 17.668 hybrid contribution 0.583 -1.626 -0.703 1.865 sum 3.179 -3.666 16.654 17.347 Atomic orbital electron populations 1.22099 0.98592 0.99049 1.00847 1.18662 0.90781 0.93727 0.78894 0.93269 1.21253 1.32359 1.13219 0.90273 0.92062 1.24875 0.94826 0.94963 0.99026 1.69913 1.35902 1.22484 1.23776 0.86391 0.78594 0.79512 0.82568 1.19766 1.20894 1.20880 1.45852 1.68755 1.13285 1.09289 1.15921 0.78335 0.85279 0.79975 1.90847 1.57486 1.13992 1.84270 1.45018 1.72771 1.16610 1.06305 1.20499 0.96809 0.90503 0.81408 1.22342 0.97708 0.97611 1.04879 1.22633 0.95501 1.04845 0.94545 1.23095 1.03586 0.94226 0.99652 1.23515 1.01560 0.97487 1.00733 1.20701 0.75201 0.81093 0.83520 1.93176 1.69124 1.56695 1.96469 1.93196 1.39029 1.90222 1.93444 1.93146 1.96091 1.80782 1.45276 0.95569 0.96637 0.89172 0.92629 0.78244 0.76978 0.91042 0.91456 0.87439 0.84310 0.88211 0.88126 0.88138 0.88301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.26 37.16 0.34 -3.26 16 2 C 0.28 7.00 2.56 -69.09 -0.18 6.82 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -13.88 8.73 -34.44 -0.30 -14.18 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.57 11.32 55.43 0.63 -23.94 16 8 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 9 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.72 -14.60 5.07 -59.82 -0.30 -14.91 16 13 C 0.70 13.50 7.76 -86.91 -0.67 12.82 16 14 O -0.59 -13.04 12.56 5.30 0.07 -12.98 16 15 N -0.75 -11.05 4.96 -52.42 -0.26 -11.31 16 16 C 0.20 2.64 0.46 -131.82 -0.06 2.58 16 17 C -0.17 -2.20 8.00 37.16 0.30 -1.90 16 18 C -0.16 -2.13 4.83 -90.62 -0.44 -2.57 16 19 C -0.17 -1.88 9.17 -26.73 -0.25 -2.13 16 20 C -0.20 -2.26 8.95 -26.73 -0.24 -2.50 16 21 C 0.45 5.36 1.83 37.16 0.07 5.43 16 22 F -0.17 -2.09 14.81 2.25 0.03 -2.05 16 23 F -0.18 -2.12 16.62 2.25 0.04 -2.08 16 24 F -0.17 -1.92 12.98 2.25 0.03 -1.89 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.39 6.81 8.56 -40.82 -0.35 6.46 16 30 H 0.40 4.99 8.39 -40.82 -0.34 4.65 16 31 H 0.07 0.79 6.70 -51.93 -0.35 0.44 16 32 H 0.07 0.84 7.75 -51.93 -0.40 0.44 16 33 H 0.11 1.71 6.29 -51.93 -0.33 1.39 16 34 H 0.14 2.33 6.41 -51.93 -0.33 1.99 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.10 1.03 5.94 -51.93 -0.31 0.72 16 37 H 0.10 1.13 4.52 -51.93 -0.23 0.90 16 38 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 312.86 15.07 4.71 4.71 Total: -1.00 -28.52 312.86 -6.18 -34.70 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -4.59 Total: 11.54 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -1.52 Total: 2.78 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.06 Total: -50.15 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.07 Total: -12.98 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 0.10 Total: -6.03 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.52 -6.18 -34.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933583174.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.380 kcal (2) G-P(sol) polarization free energy of solvation -28.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds