Wall clock time and date at job start Tue Mar 31 2020 07:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46823 * 2 1 4 4 C 1.50694 * 109.46784 * 240.00075 * 2 1 3 5 5 H 1.08000 * 120.00054 * 239.99734 * 4 2 1 6 6 C 1.37877 * 120.00318 * 60.00037 * 4 2 1 7 7 N 1.31511 * 119.99877 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99974 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46968 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46727 * 119.99963 * 8 6 4 11 11 H 1.48493 * 109.47133 * 239.99616 * 8 6 4 12 12 N 1.46490 * 109.47211 * 119.99913 * 2 1 3 13 13 C 1.34785 * 120.00020 * 275.00064 * 12 2 1 14 14 O 1.21580 * 120.00103 * 359.97438 * 13 12 2 15 15 N 1.34774 * 119.99950 * 180.02562 * 13 12 2 16 16 C 1.46497 * 120.00138 * 185.05408 * 15 13 12 17 17 C 1.53000 * 109.47342 * 296.00114 * 16 15 13 18 18 C 1.53006 * 109.47195 * 56.00131 * 16 15 13 19 19 C 1.52995 * 117.50356 * 185.00406 * 18 16 15 20 20 C 1.52998 * 117.50142 * 116.37825 * 18 16 15 21 21 C 1.52999 * 109.47245 * 175.99927 * 16 15 13 22 22 F 1.39900 * 109.47336 * 302.01526 * 21 16 15 23 23 F 1.39897 * 109.47263 * 62.01901 * 21 16 15 24 24 F 1.39903 * 109.46946 * 182.01835 * 21 16 15 25 25 H 1.09001 * 109.47291 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47134 * 300.00276 * 1 2 3 27 27 H 1.08999 * 109.47331 * 59.99609 * 1 2 3 28 28 H 0.97000 * 119.99641 * 180.02562 * 7 6 4 29 29 H 0.97003 * 120.00123 * 94.99750 * 12 2 1 30 30 H 0.97006 * 119.99990 * 5.05337 * 15 13 12 31 31 H 1.08998 * 109.47393 * 179.97438 * 17 16 15 32 32 H 1.09001 * 109.47326 * 300.00015 * 17 16 15 33 33 H 1.09004 * 109.46906 * 59.99471 * 17 16 15 34 34 H 1.09007 * 115.55462 * 330.69135 * 18 16 15 35 35 H 1.08991 * 117.50222 * 145.01938 * 19 18 16 36 36 H 1.09000 * 117.49558 * 359.97438 * 19 18 16 37 37 H 1.09001 * 117.49811 * 0.02562 * 20 18 16 38 38 H 1.08997 * 117.51665 * 214.97337 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 3.1473 -2.2864 -3.6037 10 1 1.1676 -1.5867 -4.8164 11 1 3.1471 -0.1859 -4.8161 12 7 2.0184 -0.6905 1.1961 13 6 2.1471 -0.0181 2.3571 14 8 1.8584 1.1616 2.4116 15 7 2.5969 -0.6533 3.4574 16 6 2.6322 0.0462 4.7441 17 6 3.6130 1.2176 4.6610 18 6 1.2349 0.5737 5.0764 19 6 1.0858 1.4385 6.3296 20 6 0.5432 0.0080 6.3184 21 6 3.0856 -0.9218 5.8387 22 9 2.2146 -2.0158 5.8838 23 9 4.3814 -1.3686 5.5587 24 9 3.0752 -0.2663 7.0746 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.7081 1.1608 -3.4844 29 1 2.2490 -1.6317 1.1526 30 1 2.8971 -1.5738 3.3974 31 1 3.6390 1.7384 5.6181 32 1 4.6085 0.8419 4.4242 33 1 3.2900 1.9072 3.8811 34 1 0.6083 0.8181 4.2187 35 1 0.3611 2.2519 6.2965 36 1 1.9831 1.6315 6.9176 37 1 1.0838 -0.7395 6.8990 38 1 -0.5385 -0.1196 6.2781 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933583174.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:20 Heat of formation + Delta-G solvation = -166.342212 kcal Electronic energy + Delta-G solvation = -25353.333927 eV Core-core repulsion = 21202.537602 eV Total energy + Delta-G solvation = -4150.796325 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.44203 -48.84262 -48.77366 -41.36275 -38.97833 -36.74672 -35.58237 -34.33117 -32.08594 -30.07636 -27.68137 -27.30797 -24.71222 -23.53574 -23.30191 -21.98601 -21.09881 -19.92730 -19.61261 -19.53092 -18.82723 -17.66705 -17.08191 -16.83035 -16.34351 -16.00482 -15.73004 -15.58720 -15.27543 -15.21981 -15.06255 -15.04740 -14.90075 -14.63644 -14.33967 -13.80826 -13.62816 -13.47004 -13.16450 -12.94987 -12.85787 -12.69814 -12.29919 -12.24958 -12.24426 -12.08669 -11.49278 -11.17616 -11.05980 -10.94432 -10.58252 -10.35296 -9.62013 -8.15856 -6.32304 1.26392 1.45797 1.47240 1.58555 1.70487 2.23211 2.42655 2.45648 2.76924 2.88656 3.03154 3.15102 3.31313 3.59677 3.78609 3.91969 4.15734 4.29155 4.53218 4.67401 4.70700 4.77247 4.94475 4.96439 5.05870 5.13326 5.16030 5.19923 5.34533 5.41482 5.61866 5.69926 5.85557 6.12893 6.20780 6.76065 7.26017 7.36423 7.74082 8.90717 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.028836 B = 0.004021 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.772682 B = 6961.277470 C = 7351.234729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.291 3.709 3 H 0.002 0.998 4 C -0.544 4.544 5 H 0.072 0.928 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.971 3.029 9 H -0.261 1.261 10 H -0.280 1.280 11 H -0.284 1.284 12 N -0.720 5.720 13 C 0.707 3.293 14 O -0.619 6.619 15 N -0.732 5.732 16 C 0.193 3.807 17 C -0.164 4.164 18 C -0.179 4.179 19 C -0.155 4.155 20 C -0.185 4.185 21 C 0.461 3.539 22 F -0.172 7.172 23 F -0.175 7.175 24 F -0.163 7.163 25 H 0.037 0.963 26 H 0.012 0.988 27 H 0.066 0.934 28 H 0.265 0.735 29 H 0.400 0.600 30 H 0.409 0.591 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.804 -4.777 18.712 19.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.187 3.813 3 H 0.020 0.980 4 C -0.583 4.583 5 H 0.090 0.910 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.796 3.204 9 H -0.185 1.185 10 H -0.205 1.205 11 H -0.210 1.210 12 N -0.372 5.372 13 C 0.407 3.593 14 O -0.500 6.500 15 N -0.391 5.391 16 C 0.104 3.896 17 C -0.222 4.222 18 C -0.199 4.199 19 C -0.192 4.192 20 C -0.221 4.221 21 C 0.407 3.593 22 F -0.153 7.153 23 F -0.156 7.156 24 F -0.144 7.144 25 H 0.056 0.944 26 H 0.032 0.968 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.235 0.765 30 H 0.245 0.755 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.455 -3.626 18.616 19.278 hybrid contribution 0.314 -1.100 -1.001 1.520 sum 3.769 -4.726 17.615 18.623 Atomic orbital electron populations 1.21908 0.98483 0.99247 0.99519 1.18216 0.90773 0.91712 0.80603 0.97982 1.21564 1.32430 1.13494 0.90771 0.91004 1.25754 0.94917 0.95584 1.02185 1.70055 1.37015 1.23933 1.24505 0.85309 0.78046 0.78500 0.78524 1.18495 1.20533 1.21002 1.45470 1.69232 1.13846 1.08670 1.15930 0.78083 0.84820 0.80469 1.90836 1.58648 1.15629 1.84882 1.44748 1.71454 1.17058 1.05827 1.20618 0.97075 0.90974 0.80977 1.22287 0.97702 0.97119 1.05105 1.22432 0.95394 1.07609 0.94440 1.23210 1.04181 0.94318 0.97524 1.23568 1.01920 0.97846 0.98784 1.20282 0.75200 0.80678 0.83189 1.93186 1.69128 1.56524 1.96449 1.93210 1.38799 1.90133 1.93457 1.93166 1.96056 1.80649 1.44516 0.94406 0.96841 0.91540 0.92578 0.76534 0.75479 0.88669 0.90836 0.90537 0.87826 0.87557 0.86711 0.87430 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.65 9.26 71.98 0.67 -5.98 16 2 C 0.29 14.82 2.56 44.25 0.11 14.93 16 3 H 0.00 0.14 7.58 -2.39 -0.02 0.12 16 4 C -0.54 -28.39 8.73 25.60 0.22 -28.16 16 5 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 6 C 0.02 0.83 5.30 84.66 0.45 1.28 16 7 N -0.92 -51.98 11.32 21.45 0.24 -51.74 16 8 Si 0.97 41.61 29.54 68.60 2.03 43.63 16 9 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 12 N -0.72 -29.30 5.07 -461.43 -2.34 -31.64 16 13 C 0.71 27.40 7.76 179.05 1.39 28.79 16 14 O -0.62 -28.52 12.56 -3.97 -0.05 -28.57 16 15 N -0.73 -21.08 4.96 -438.01 -2.17 -23.25 16 16 C 0.19 4.92 0.46 3.61 0.00 4.93 16 17 C -0.16 -4.16 8.00 71.98 0.58 -3.58 16 18 C -0.18 -4.77 4.83 -10.79 -0.05 -4.82 16 19 C -0.16 -3.19 9.17 30.59 0.28 -2.91 16 20 C -0.18 -3.89 8.95 30.59 0.27 -3.62 16 21 C 0.46 9.88 1.83 71.98 0.13 10.01 16 22 F -0.17 -3.70 14.81 44.97 0.67 -3.03 16 23 F -0.17 -3.72 16.62 44.97 0.75 -2.97 16 24 F -0.16 -3.14 12.98 44.97 0.58 -2.56 16 25 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16 28 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 29 H 0.40 13.80 8.56 -92.71 -0.79 13.01 16 30 H 0.41 9.67 8.39 -92.70 -0.78 8.89 16 31 H 0.09 1.90 6.70 -2.39 -0.02 1.89 16 32 H 0.07 1.74 7.75 -2.39 -0.02 1.72 16 33 H 0.08 2.48 6.29 -2.39 -0.02 2.46 16 34 H 0.10 3.57 6.41 -2.38 -0.02 3.56 16 35 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.11 2.03 5.94 -2.39 -0.01 2.01 16 37 H 0.11 2.13 4.52 -2.39 -0.01 2.12 16 38 H 0.10 2.08 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -62.18 312.86 3.31 -58.87 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: -0.44 Total: 30.39 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 4.05 Total: 10.87 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -4.27 Total: -106.63 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.05 Total: -28.57 kcal Atomic # 9 Polarization: -10.56 SS G_CDS: 2.00 Total: -8.56 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Total: -62.18 3.31 -58.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933583174.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.471 kcal (2) G-P(sol) polarization free energy of solvation -62.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds