Wall clock time and date at job start Tue Mar 31 2020 07:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47439 * 2 1 4 4 C 1.50700 * 109.46831 * 119.99647 * 2 1 3 5 5 H 1.08002 * 120.00392 * 119.99686 * 4 2 1 6 6 C 1.37876 * 120.00010 * 300.00238 * 4 2 1 7 7 N 1.31515 * 120.00503 * 180.02562 * 6 4 2 8 8 Si 1.86805 * 119.99899 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47076 * 90.00285 * 8 6 4 10 10 H 1.48501 * 109.46991 * 210.00079 * 8 6 4 11 11 H 1.48499 * 109.46944 * 330.00022 * 8 6 4 12 12 N 1.46504 * 109.47352 * 239.99375 * 2 1 3 13 13 C 1.34772 * 119.99733 * 85.00100 * 12 2 1 14 14 O 1.21582 * 120.00156 * 0.02562 * 13 12 2 15 15 N 1.34773 * 119.99793 * 179.97438 * 13 12 2 16 16 C 1.46505 * 120.00082 * 185.05462 * 15 13 12 17 17 C 1.52994 * 109.47475 * 296.00794 * 16 15 13 18 18 C 1.52998 * 109.46675 * 56.00814 * 16 15 13 19 19 C 1.53003 * 117.49715 * 184.99939 * 18 16 15 20 20 C 1.52998 * 117.49910 * 116.37589 * 18 16 15 21 21 C 1.52999 * 109.46930 * 176.00411 * 16 15 13 22 22 F 1.39900 * 109.47336 * 302.01830 * 21 16 15 23 23 F 1.39897 * 109.47263 * 62.02205 * 21 16 15 24 24 F 1.39903 * 109.46946 * 182.02140 * 21 16 15 25 25 H 1.08998 * 109.47012 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47158 * 300.00923 * 1 2 3 27 27 H 1.08998 * 109.46468 * 60.00732 * 1 2 3 28 28 H 0.96999 * 120.00494 * 180.02562 * 7 6 4 29 29 H 0.96994 * 119.99791 * 265.00367 * 12 2 1 30 30 H 0.97003 * 120.00257 * 5.06450 * 15 13 12 31 31 H 1.08993 * 109.47442 * 179.97438 * 17 16 15 32 32 H 1.09001 * 109.47346 * 299.99997 * 17 16 15 33 33 H 1.09004 * 109.47158 * 59.99620 * 17 16 15 34 34 H 1.09009 * 115.56371 * 330.68692 * 18 16 15 35 35 H 1.09006 * 117.49577 * 145.02265 * 19 18 16 36 36 H 1.09000 * 117.49776 * 359.97438 * 19 18 16 37 37 H 1.09001 * 117.50351 * 0.02562 * 20 18 16 38 38 H 1.09005 * 117.51841 * 214.96654 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.6991 -0.2392 2.4827 7 7 2.1378 -0.8588 3.5567 8 14 0.6257 1.2800 2.6540 9 1 -0.8021 0.8747 2.6991 10 1 0.9770 1.9956 3.9069 11 1 0.8491 2.1774 1.4921 12 7 2.0184 -0.6907 -1.1961 13 6 2.1472 -0.0185 -2.3571 14 8 1.8585 1.1613 -2.4117 15 7 2.5970 -0.6538 -3.4573 16 6 2.8423 0.0998 -4.6895 17 6 1.5231 0.6788 -5.2045 18 6 3.8223 1.2394 -4.4036 19 6 4.1182 2.2187 -5.5413 20 6 5.1772 1.2007 -5.1133 21 6 3.4379 -0.8318 -5.7470 22 9 4.6206 -1.3968 -5.2579 23 9 2.5227 -1.8480 -6.0419 24 9 3.7150 -0.1024 -6.9082 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8898 27 1 -0.3632 0.5137 -0.8901 28 1 1.9031 -0.5276 4.4376 29 1 2.2491 -1.6319 -1.1524 30 1 2.7581 -1.6100 -3.4334 31 1 1.7057 1.2398 -6.1210 32 1 0.8249 -0.1331 -5.4081 33 1 1.0988 1.3424 -4.4511 34 1 3.7965 1.6388 -3.3897 35 1 4.2871 3.2624 -5.2758 36 1 3.6150 2.0509 -6.4935 37 1 5.3703 0.3636 -5.7842 38 1 6.0430 1.5747 -4.5667 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933583175.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:24 Heat of formation + Delta-G solvation = -139.658609 kcal Electronic energy + Delta-G solvation = -25425.748294 eV Core-core repulsion = 21276.109057 eV Total energy + Delta-G solvation = -4149.639237 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.52950 -47.94561 -47.85919 -40.09965 -37.85667 -35.26265 -34.32048 -32.49146 -31.01449 -29.09020 -26.72948 -25.19515 -23.71330 -22.43864 -22.09279 -20.56306 -19.78464 -18.89648 -18.65895 -18.36284 -17.48961 -16.22409 -16.00054 -15.42278 -15.07811 -14.82881 -14.65016 -14.61945 -14.28920 -14.11992 -14.05696 -13.95870 -13.59276 -13.29573 -12.98753 -12.68888 -12.50672 -12.22411 -12.18136 -11.82933 -11.40966 -11.31194 -11.26236 -10.81176 -10.51738 -10.24495 -10.19097 -9.75801 -9.43028 -9.25510 -9.09967 -8.76829 -8.13793 -6.21777 -4.24419 2.29509 2.80490 3.22906 3.35067 3.39234 3.40069 3.54417 3.72886 3.86476 3.97720 4.30635 4.37500 4.69862 4.76083 4.87922 5.10690 5.13258 5.23577 5.46497 5.58189 5.64383 5.81067 5.99536 6.12182 6.19589 6.29580 6.35731 6.46687 6.55740 6.77087 7.00931 7.29166 7.42271 7.52015 8.25522 8.61143 8.77363 9.07692 9.39179 10.90404 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.027692 B = 0.004246 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.877435 B = 6592.785605 C = 6733.603958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.255 3.745 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.080 0.920 6 C 0.079 3.921 7 N -0.893 5.893 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.295 1.295 11 H -0.261 1.261 12 N -0.713 5.713 13 C 0.707 3.293 14 O -0.589 6.589 15 N -0.746 5.746 16 C 0.197 3.803 17 C -0.167 4.167 18 C -0.158 4.158 19 C -0.168 4.168 20 C -0.195 4.195 21 C 0.450 3.550 22 F -0.172 7.172 23 F -0.177 7.177 24 F -0.171 7.171 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.036 0.964 28 H 0.267 0.733 29 H 0.392 0.608 30 H 0.398 0.602 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.139 0.861 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.309 0.867 -19.938 20.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.151 3.849 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.365 5.365 13 C 0.407 3.593 14 O -0.468 6.468 15 N -0.404 5.404 16 C 0.107 3.893 17 C -0.225 4.225 18 C -0.177 4.177 19 C -0.206 4.206 20 C -0.232 4.232 21 C 0.395 3.605 22 F -0.153 7.153 23 F -0.159 7.159 24 F -0.152 7.152 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.225 0.775 30 H 0.233 0.767 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.125 0.875 34 H 0.157 0.843 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.060 1.931 -19.733 19.934 hybrid contribution -0.244 -0.466 0.143 0.545 sum 1.816 1.465 -19.590 19.728 Atomic orbital electron populations 1.22477 0.99455 1.00812 0.99300 1.19005 0.89885 0.94378 0.81637 0.93284 1.21035 1.33276 1.14480 0.88497 0.90218 1.24818 0.95501 0.96712 0.95480 1.69864 1.44878 1.40148 0.98052 0.86872 0.80508 0.83608 0.77458 1.20326 1.22196 1.18597 1.45454 1.68898 1.13682 1.08423 1.15864 0.78150 0.85265 0.79981 1.90846 1.57304 1.14276 1.84395 1.44954 1.74307 1.11157 1.10020 1.20519 0.97035 0.88999 0.82733 1.22334 0.94334 1.02777 1.03058 1.22637 0.95758 0.98497 1.00812 1.23103 1.02592 0.96402 0.98457 1.23524 0.93159 1.02765 1.03741 1.20665 0.76608 0.80403 0.82802 1.93186 1.48504 1.86112 1.87532 1.93197 1.66551 1.62109 1.94023 1.93149 1.93640 1.77012 1.51445 0.92900 0.93480 0.94466 0.92269 0.77455 0.76736 0.90931 0.91436 0.87545 0.84286 0.88196 0.88118 0.88085 0.88192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 8.96 37.16 0.33 -3.21 16 2 C 0.25 5.92 2.15 -69.08 -0.15 5.77 16 3 H 0.05 1.26 6.63 -51.93 -0.34 0.91 16 4 C -0.53 -14.22 9.31 -34.44 -0.32 -14.54 16 5 H 0.08 2.24 7.98 -52.49 -0.42 1.82 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 7 N -0.89 -26.21 13.96 55.43 0.77 -25.43 16 8 Si 0.89 21.48 24.37 -169.99 -4.14 17.34 16 9 H -0.28 -6.50 6.87 56.52 0.39 -6.11 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.26 -6.27 6.53 56.52 0.37 -5.90 16 12 N -0.71 -13.69 5.07 -59.81 -0.30 -14.00 16 13 C 0.71 12.72 7.76 -86.93 -0.67 12.04 16 14 O -0.59 -12.20 12.56 5.29 0.07 -12.13 16 15 N -0.75 -10.39 4.96 -52.42 -0.26 -10.65 16 16 C 0.20 2.49 0.46 -131.82 -0.06 2.43 16 17 C -0.17 -2.02 8.00 37.15 0.30 -1.73 16 18 C -0.16 -2.07 4.83 -90.62 -0.44 -2.51 16 19 C -0.17 -1.80 9.17 -26.73 -0.25 -2.05 16 20 C -0.20 -2.19 8.95 -26.73 -0.24 -2.43 16 21 C 0.45 5.13 1.83 37.16 0.07 5.20 16 22 F -0.17 -2.02 14.81 2.25 0.03 -1.99 16 23 F -0.18 -2.01 16.62 2.25 0.04 -1.97 16 24 F -0.17 -1.83 12.98 2.25 0.03 -1.80 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.39 6.67 8.56 -40.82 -0.35 6.33 16 30 H 0.40 4.73 8.39 -40.82 -0.34 4.38 16 31 H 0.07 0.74 6.70 -51.93 -0.35 0.39 16 32 H 0.07 0.77 7.75 -51.93 -0.40 0.37 16 33 H 0.11 1.56 6.29 -51.93 -0.33 1.23 16 34 H 0.14 2.24 6.41 -51.92 -0.33 1.91 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.10 0.98 5.94 -51.93 -0.31 0.67 16 37 H 0.10 1.11 4.52 -51.93 -0.23 0.88 16 38 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 306.05 15.07 4.61 4.61 Total: -1.00 -29.54 306.05 -5.13 -34.67 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -4.45 Total: 10.30 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -1.53 Total: 1.06 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: 0.21 Total: -50.08 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.07 Total: -12.13 kcal Atomic # 9 Polarization: -5.87 SS G_CDS: 0.10 Total: -5.77 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.14 Total: 17.34 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.54 -5.13 -34.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933583175.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.991 kcal (2) G-P(sol) polarization free energy of solvation -29.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds