Wall clock time and date at job start Tue Mar 31 2020 07:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47439 * 2 1 4 4 C 1.50700 * 109.46831 * 119.99647 * 2 1 3 5 5 H 1.08002 * 120.00392 * 119.99686 * 4 2 1 6 6 C 1.37876 * 120.00010 * 300.00238 * 4 2 1 7 7 N 1.31515 * 120.00503 * 180.02562 * 6 4 2 8 8 Si 1.86805 * 119.99899 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47076 * 90.00285 * 8 6 4 10 10 H 1.48501 * 109.46991 * 210.00079 * 8 6 4 11 11 H 1.48499 * 109.46944 * 330.00022 * 8 6 4 12 12 N 1.46504 * 109.47352 * 239.99375 * 2 1 3 13 13 C 1.34772 * 119.99733 * 85.00100 * 12 2 1 14 14 O 1.21582 * 120.00156 * 0.02562 * 13 12 2 15 15 N 1.34773 * 119.99793 * 179.97438 * 13 12 2 16 16 C 1.46505 * 120.00082 * 185.05462 * 15 13 12 17 17 C 1.52994 * 109.47475 * 296.00794 * 16 15 13 18 18 C 1.52998 * 109.46675 * 56.00814 * 16 15 13 19 19 C 1.53003 * 117.49715 * 184.99939 * 18 16 15 20 20 C 1.52998 * 117.49910 * 116.37589 * 18 16 15 21 21 C 1.52999 * 109.46930 * 176.00411 * 16 15 13 22 22 F 1.39900 * 109.47336 * 302.01830 * 21 16 15 23 23 F 1.39897 * 109.47263 * 62.02205 * 21 16 15 24 24 F 1.39903 * 109.46946 * 182.02140 * 21 16 15 25 25 H 1.08998 * 109.47012 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47158 * 300.00923 * 1 2 3 27 27 H 1.08998 * 109.46468 * 60.00732 * 1 2 3 28 28 H 0.96999 * 120.00494 * 180.02562 * 7 6 4 29 29 H 0.96994 * 119.99791 * 265.00367 * 12 2 1 30 30 H 0.97003 * 120.00257 * 5.06450 * 15 13 12 31 31 H 1.08993 * 109.47442 * 179.97438 * 17 16 15 32 32 H 1.09001 * 109.47346 * 299.99997 * 17 16 15 33 33 H 1.09004 * 109.47158 * 59.99620 * 17 16 15 34 34 H 1.09009 * 115.56371 * 330.68692 * 18 16 15 35 35 H 1.09006 * 117.49577 * 145.02265 * 19 18 16 36 36 H 1.09000 * 117.49776 * 359.97438 * 19 18 16 37 37 H 1.09001 * 117.50351 * 0.02562 * 20 18 16 38 38 H 1.09005 * 117.51841 * 214.96654 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.6991 -0.2392 2.4827 7 7 2.1378 -0.8588 3.5567 8 14 0.6257 1.2800 2.6540 9 1 -0.8021 0.8747 2.6991 10 1 0.9770 1.9956 3.9069 11 1 0.8491 2.1774 1.4921 12 7 2.0184 -0.6907 -1.1961 13 6 2.1472 -0.0185 -2.3571 14 8 1.8585 1.1613 -2.4117 15 7 2.5970 -0.6538 -3.4573 16 6 2.8423 0.0998 -4.6895 17 6 1.5231 0.6788 -5.2045 18 6 3.8223 1.2394 -4.4036 19 6 4.1182 2.2187 -5.5413 20 6 5.1772 1.2007 -5.1133 21 6 3.4379 -0.8318 -5.7470 22 9 4.6206 -1.3968 -5.2579 23 9 2.5227 -1.8480 -6.0419 24 9 3.7150 -0.1024 -6.9082 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8898 27 1 -0.3632 0.5137 -0.8901 28 1 1.9031 -0.5276 4.4376 29 1 2.2491 -1.6319 -1.1524 30 1 2.7581 -1.6100 -3.4334 31 1 1.7057 1.2398 -6.1210 32 1 0.8249 -0.1331 -5.4081 33 1 1.0988 1.3424 -4.4511 34 1 3.7965 1.6388 -3.3897 35 1 4.2871 3.2624 -5.2758 36 1 3.6150 2.0509 -6.4935 37 1 5.3703 0.3636 -5.7842 38 1 6.0430 1.5747 -4.5667 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933583175.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:23 Heat of formation + Delta-G solvation = -160.123932 kcal Electronic energy + Delta-G solvation = -25426.635737 eV Core-core repulsion = 21276.109057 eV Total energy + Delta-G solvation = -4150.526680 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.44402 -48.84428 -48.77879 -41.42806 -39.03925 -36.86601 -35.61114 -34.40694 -32.47766 -30.57671 -27.69255 -27.19187 -24.75463 -23.57479 -23.30675 -21.99917 -21.15406 -19.97740 -19.64577 -19.56207 -18.88229 -17.99715 -17.17253 -16.93425 -16.37731 -16.09546 -15.73758 -15.58800 -15.36430 -15.16910 -15.11683 -15.06216 -14.93561 -14.78416 -14.58038 -14.08528 -13.89551 -13.52674 -13.46353 -13.22691 -13.08750 -12.74762 -12.29689 -12.25182 -12.11838 -11.58856 -11.48987 -11.24934 -11.18421 -10.96799 -10.84837 -10.39089 -9.74535 -8.36053 -6.41964 1.23846 1.30211 1.38328 1.47745 1.66262 2.16829 2.28372 2.45257 2.75647 2.87735 3.00055 3.01074 3.23754 3.55609 3.77718 3.91863 4.14395 4.28201 4.47692 4.54412 4.59599 4.68501 4.70837 4.74594 4.94292 5.00710 5.04658 5.15510 5.19654 5.30313 5.34494 5.47294 5.67976 5.89122 6.26753 6.60686 7.13635 7.24436 7.63976 8.79293 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.027692 B = 0.004246 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.877435 B = 6592.785605 C = 6733.603958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.263 3.737 3 H 0.026 0.974 4 C -0.532 4.532 5 H 0.055 0.945 6 C 0.029 3.971 7 N -0.935 5.935 8 Si 0.940 3.060 9 H -0.260 1.260 10 H -0.294 1.294 11 H -0.259 1.259 12 N -0.715 5.715 13 C 0.711 3.289 14 O -0.615 6.615 15 N -0.732 5.732 16 C 0.192 3.808 17 C -0.163 4.163 18 C -0.180 4.180 19 C -0.153 4.153 20 C -0.189 4.189 21 C 0.460 3.540 22 F -0.173 7.173 23 F -0.174 7.174 24 F -0.163 7.163 25 H 0.062 0.938 26 H 0.040 0.960 27 H 0.048 0.952 28 H 0.270 0.730 29 H 0.403 0.597 30 H 0.409 0.591 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.115 0.885 37 H 0.107 0.893 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.809 1.207 -22.044 22.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.157 3.843 3 H 0.044 0.956 4 C -0.571 4.571 5 H 0.073 0.927 6 C -0.171 4.171 7 N -0.574 5.574 8 Si 0.767 3.233 9 H -0.186 1.186 10 H -0.222 1.222 11 H -0.184 1.184 12 N -0.368 5.368 13 C 0.411 3.589 14 O -0.495 6.495 15 N -0.390 5.390 16 C 0.103 3.897 17 C -0.221 4.221 18 C -0.199 4.199 19 C -0.190 4.190 20 C -0.225 4.225 21 C 0.405 3.595 22 F -0.155 7.155 23 F -0.156 7.156 24 F -0.144 7.144 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.237 0.763 30 H 0.246 0.754 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.134 0.866 37 H 0.125 0.875 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.572 2.235 -21.892 22.062 hybrid contribution 0.003 -0.606 0.729 0.948 sum 1.575 1.629 -21.162 21.283 Atomic orbital electron populations 1.22360 0.97917 1.01579 0.99487 1.18626 0.90938 0.92885 0.81819 0.95628 1.21256 1.32274 1.13564 0.89957 0.92700 1.25550 0.96866 0.99383 0.95281 1.69977 1.46746 1.42032 0.98669 0.85991 0.79712 0.80328 0.77240 1.18582 1.22190 1.18381 1.45169 1.69498 1.14108 1.08018 1.15825 0.77949 0.84812 0.80320 1.90835 1.58295 1.15507 1.84903 1.44741 1.73041 1.11750 1.09498 1.20651 0.97534 0.89162 0.82321 1.22287 0.93926 1.02761 1.03131 1.22459 0.97463 0.99926 1.00046 1.23213 1.01487 0.96438 0.97853 1.23572 0.92602 1.03136 1.03234 1.20326 0.76459 0.80136 0.82572 1.93191 1.48565 1.86097 1.87612 1.93211 1.66461 1.61919 1.93964 1.93167 1.93560 1.76854 1.50828 0.91856 0.94146 0.93306 0.92088 0.76262 0.75416 0.88741 0.90652 0.90076 0.87628 0.87486 0.86643 0.87525 0.87860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.56 8.96 71.98 0.65 -5.91 16 2 C 0.26 12.14 2.15 44.25 0.10 12.23 16 3 H 0.03 1.32 6.63 -2.39 -0.02 1.31 16 4 C -0.53 -28.60 9.31 25.60 0.24 -28.36 16 5 H 0.05 3.15 7.98 -2.91 -0.02 3.13 16 6 C 0.03 1.61 5.45 84.65 0.46 2.07 16 7 N -0.94 -55.74 13.96 21.45 0.30 -55.44 16 8 Si 0.94 44.11 24.37 68.60 1.67 45.78 16 9 H -0.26 -11.46 6.87 99.48 0.68 -10.78 16 10 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 11 H -0.26 -12.00 6.53 99.48 0.65 -11.35 16 12 N -0.72 -27.20 5.07 -461.42 -2.34 -29.54 16 13 C 0.71 25.19 7.76 179.06 1.39 26.58 16 14 O -0.61 -25.38 12.56 -3.97 -0.05 -25.43 16 15 N -0.73 -19.55 4.96 -438.03 -2.17 -21.72 16 16 C 0.19 4.55 0.46 3.60 0.00 4.55 16 17 C -0.16 -3.64 8.00 71.98 0.58 -3.07 16 18 C -0.18 -4.51 4.83 -10.79 -0.05 -4.56 16 19 C -0.15 -2.94 9.17 30.60 0.28 -2.66 16 20 C -0.19 -3.89 8.95 30.59 0.27 -3.61 16 21 C 0.46 9.36 1.83 71.98 0.13 9.50 16 22 F -0.17 -3.70 14.81 44.97 0.67 -3.03 16 23 F -0.17 -3.49 16.62 44.97 0.75 -2.74 16 24 F -0.16 -2.99 12.98 44.97 0.58 -2.41 16 25 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.04 1.75 3.27 -2.39 -0.01 1.74 16 27 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 29 H 0.40 13.53 8.56 -92.71 -0.79 12.73 16 30 H 0.41 9.09 8.39 -92.71 -0.78 8.31 16 31 H 0.09 1.66 6.70 -2.39 -0.02 1.64 16 32 H 0.07 1.54 7.75 -2.39 -0.02 1.53 16 33 H 0.08 2.30 6.29 -2.39 -0.02 2.28 16 34 H 0.11 3.45 6.41 -2.38 -0.02 3.43 16 35 H 0.11 1.91 8.14 -2.38 -0.02 1.90 16 36 H 0.12 1.88 5.94 -2.39 -0.01 1.86 16 37 H 0.11 2.09 4.52 -2.39 -0.01 2.07 16 38 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -63.14 306.05 2.93 -60.21 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: -0.52 Total: 27.56 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 4.04 Total: 6.75 kcal Atomic # 7 Polarization: -102.48 SS G_CDS: -4.22 Total: -106.70 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.05 Total: -25.43 kcal Atomic # 9 Polarization: -10.18 SS G_CDS: 2.00 Total: -8.18 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.67 Total: 45.78 kcal Total: -63.14 2.93 -60.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933583175.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.910 kcal (2) G-P(sol) polarization free energy of solvation -63.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds