Wall clock time and date at job start Tue Mar 31 2020 07:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47428 * 2 1 4 4 C 1.50707 * 109.46836 * 119.99717 * 2 1 3 5 5 O 1.21278 * 119.99835 * 85.46891 * 4 2 1 6 6 N 1.34774 * 120.00156 * 265.46261 * 4 2 1 7 7 C 1.47024 * 125.64806 * 355.55726 * 6 4 2 8 8 C 1.54323 * 107.27456 * 178.89555 * 7 6 4 9 9 C 1.55164 * 102.93997 * 337.80920 * 8 7 6 10 10 H 1.08991 * 110.99960 * 277.38740 * 9 8 7 11 11 N 1.46497 * 111.00292 * 153.57223 * 9 8 7 12 12 C 1.46497 * 120.00083 * 304.58030 * 11 9 8 13 13 C 1.36937 * 120.00168 * 124.57879 * 11 9 8 14 14 H 1.08005 * 119.99611 * 343.79842 * 13 11 9 15 15 C 1.38806 * 120.00344 * 164.06475 * 13 11 9 16 16 N 1.31615 * 120.00022 * 344.25266 * 15 13 11 17 17 Si 1.86797 * 120.00222 * 164.25366 * 15 13 11 18 18 H 1.48506 * 109.47365 * 90.00004 * 17 15 13 19 19 H 1.48501 * 109.47259 * 210.00331 * 17 15 13 20 20 H 1.48507 * 109.47112 * 330.00135 * 17 15 13 21 21 C 1.47467 * 125.63105 * 175.46570 * 6 4 2 22 22 C 1.53000 * 109.47191 * 239.99463 * 2 1 3 23 23 F 1.39899 * 109.47116 * 300.00132 * 22 2 1 24 24 F 1.39901 * 109.46934 * 60.00420 * 22 2 1 25 25 F 1.39905 * 109.47046 * 180.02562 * 22 2 1 26 26 H 1.09010 * 109.46609 * 63.99361 * 1 2 3 27 27 H 1.08998 * 109.47223 * 183.99747 * 1 2 3 28 28 H 1.09004 * 109.47280 * 303.99833 * 1 2 3 29 29 H 1.09003 * 109.88188 * 59.48021 * 7 6 4 30 30 H 1.08998 * 109.88246 * 298.31797 * 7 6 4 31 31 H 1.08996 * 110.72381 * 219.44183 * 8 7 6 32 32 H 1.09004 * 110.71715 * 96.16806 * 8 7 6 33 33 H 1.09001 * 109.47356 * 265.19749 * 12 11 9 34 34 H 1.09000 * 109.47310 * 25.19585 * 12 11 9 35 35 H 1.09007 * 109.46992 * 145.20015 * 12 11 9 36 36 H 0.97004 * 120.00423 * 179.97438 * 16 15 13 37 37 H 1.08997 * 110.34637 * 85.33087 * 21 6 4 38 38 H 1.08997 * 110.40246 * 322.99288 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.1561 -1.9168 1.2262 6 7 2.3439 -0.0050 2.3359 7 6 2.3297 1.4608 2.4493 8 6 2.7276 1.8122 3.8983 9 6 2.3942 0.5112 4.6754 10 1 1.3360 0.4705 4.9332 11 7 3.2288 0.3864 5.8729 12 6 4.6884 0.4314 5.7565 13 6 2.6446 0.2277 7.1012 14 1 1.5965 0.4525 7.2337 15 6 3.4005 -0.2167 8.1772 16 7 4.5739 -0.7761 7.9707 17 14 2.7526 -0.0210 9.9182 18 1 1.9671 -1.2245 10.2924 19 1 3.8931 0.1370 10.8560 20 1 1.8823 1.1802 9.9904 21 6 2.7538 -0.5761 3.6322 22 6 2.0400 -0.7214 -1.2492 23 9 1.5736 -2.0403 -1.2491 24 9 1.5737 -0.0619 -2.3915 25 9 3.4390 -0.7219 -1.2488 26 1 -0.3633 0.4507 -0.9237 27 1 -0.3633 -1.0251 0.0716 28 1 -0.3634 0.5747 0.8520 29 1 1.3297 1.8393 2.2373 30 1 3.0474 1.8935 1.7524 31 1 2.1329 2.6466 4.2700 32 1 3.7922 2.0374 3.9620 33 1 5.0793 -0.5840 5.6917 34 1 4.9644 0.9849 4.8589 35 1 5.1077 0.9269 6.6322 36 1 5.1024 -1.0863 8.7227 37 1 3.8266 -0.7685 3.6393 38 1 2.2015 -1.4936 3.8349 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972075496.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:45 Heat of formation + Delta-G solvation = -159.099112 kcal Electronic energy + Delta-G solvation = -24817.313977 eV Core-core repulsion = 20666.831737 eV Total energy + Delta-G solvation = -4150.482240 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.20344 -47.74612 -47.57991 -40.08444 -37.67921 -34.96572 -34.10943 -31.65746 -29.84259 -28.10517 -26.69351 -26.14157 -24.47808 -22.64987 -22.34044 -19.60866 -19.40878 -18.71560 -18.46571 -17.33682 -17.15718 -16.92092 -15.95749 -15.21783 -14.89809 -14.56847 -14.44510 -14.11222 -14.07316 -13.84358 -13.75248 -13.64277 -13.39271 -13.30743 -13.03162 -12.79945 -12.51664 -12.26558 -12.22732 -12.05071 -11.60818 -11.56529 -10.97637 -10.85903 -10.58471 -10.49818 -10.35022 -9.99751 -9.87227 -9.83327 -8.66010 -8.47950 -6.95641 -5.82137 -3.23875 2.24988 2.61525 2.96213 3.33937 3.40894 3.42290 3.54847 3.87128 3.90295 4.40384 4.44409 4.61320 4.67390 4.86680 5.13072 5.14332 5.23329 5.29093 5.38173 5.51915 5.66411 5.69645 5.78786 5.88822 6.19011 6.27163 6.35516 6.50501 6.70686 6.76709 7.33185 7.54850 7.62325 7.74355 8.05820 8.26162 9.12287 9.75423 10.20900 11.23067 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.035511 B = 0.003470 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.304468 B = 8066.645930 C = 8130.700590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.159 4.159 3 H 0.130 0.870 4 C 0.530 3.470 5 O -0.523 6.523 6 N -0.605 5.605 7 C 0.098 3.902 8 C -0.154 4.154 9 C 0.174 3.826 10 H 0.079 0.921 11 N -0.586 5.586 12 C 0.160 3.840 13 C -0.261 4.261 14 H 0.073 0.927 15 C 0.003 3.997 16 N -0.905 5.905 17 Si 0.907 3.093 18 H -0.287 1.287 19 H -0.289 1.289 20 H -0.280 1.280 21 C 0.086 3.914 22 C 0.469 3.531 23 F -0.165 7.165 24 F -0.182 7.182 25 F -0.180 7.180 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.028 0.972 34 H 0.001 0.999 35 H 0.053 0.947 36 H 0.254 0.746 37 H 0.071 0.929 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.376 6.464 -16.755 19.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.182 4.182 3 H 0.148 0.852 4 C 0.316 3.684 5 O -0.400 6.400 6 N -0.339 5.339 7 C -0.025 4.025 8 C -0.194 4.194 9 C 0.063 3.937 10 H 0.097 0.903 11 N -0.306 5.306 12 C 0.015 3.985 13 C -0.391 4.391 14 H 0.091 0.909 15 C -0.195 4.195 16 N -0.550 5.550 17 Si 0.736 3.264 18 H -0.214 1.214 19 H -0.215 1.215 20 H -0.205 1.205 21 C -0.038 4.038 22 C 0.415 3.585 23 F -0.146 7.146 24 F -0.164 7.164 25 F -0.161 7.161 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.046 0.954 34 H 0.020 0.980 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.152 5.685 -16.655 18.643 hybrid contribution -0.058 0.007 0.682 0.685 sum -6.210 5.692 -15.973 18.058 Atomic orbital electron populations 1.21759 0.88934 1.04967 1.04551 1.22602 1.01664 1.02545 0.91397 0.85244 1.19314 0.78714 0.87182 0.83210 1.90807 1.53218 1.13405 1.82525 1.48463 1.65783 1.07878 1.11756 1.22153 1.00861 0.80081 0.99445 1.23222 1.02880 1.00916 0.92338 1.21425 0.95841 0.90259 0.86188 0.90278 1.43935 1.01754 1.83602 1.01284 1.20873 0.82452 0.98693 0.96448 1.19247 0.95390 1.39231 0.85186 0.90913 1.24917 0.97259 0.98712 0.98648 1.70119 1.13148 1.41868 1.29868 0.86233 0.77780 0.77977 0.84380 1.21392 1.21525 1.20509 1.23252 1.00672 0.99377 0.80517 1.19893 0.75682 0.78304 0.84665 1.93243 1.88144 1.36620 1.96589 1.93174 1.88530 1.80911 1.53758 1.93211 1.29725 1.96443 1.96723 0.90061 0.90306 0.89680 0.91538 0.91751 0.90287 0.90179 0.95399 0.98043 0.92853 0.93572 0.91066 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.93 37.16 0.33 -0.89 16 2 C -0.16 -1.72 2.41 -91.77 -0.22 -1.94 16 3 H 0.13 1.04 7.00 -51.93 -0.36 0.67 16 4 C 0.53 8.06 6.58 -10.98 -0.07 7.99 16 5 O -0.52 -10.12 15.65 5.56 0.09 -10.03 16 6 N -0.61 -9.05 3.33 -170.49 -0.57 -9.62 16 7 C 0.10 1.13 5.97 -3.06 -0.02 1.11 16 8 C -0.15 -2.19 6.49 -24.89 -0.16 -2.35 16 9 C 0.17 3.22 3.54 -65.78 -0.23 2.99 16 10 H 0.08 1.46 7.91 -51.93 -0.41 1.05 16 11 N -0.59 -13.70 2.97 -171.03 -0.51 -14.20 16 12 C 0.16 3.72 7.72 59.85 0.46 4.18 16 13 C -0.26 -6.82 9.69 -15.06 -0.15 -6.96 16 14 H 0.07 1.83 7.81 -52.48 -0.41 1.42 16 15 C 0.00 0.08 5.07 -17.43 -0.09 -0.01 16 16 N -0.91 -25.59 10.46 55.49 0.58 -25.01 16 17 Si 0.91 21.12 29.58 -169.99 -5.03 16.09 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 21 C 0.09 1.57 6.48 -2.51 -0.02 1.56 16 22 C 0.47 5.79 2.57 37.16 0.10 5.88 16 23 F -0.16 -2.38 15.46 2.25 0.03 -2.34 16 24 F -0.18 -1.95 16.73 2.25 0.04 -1.92 16 25 F -0.18 -2.49 17.02 2.25 0.04 -2.45 16 26 H 0.08 0.53 7.69 -51.92 -0.40 0.13 16 27 H 0.08 0.77 7.92 -51.93 -0.41 0.36 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.63 7.98 -51.93 -0.41 0.22 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.08 1.22 6.16 -51.93 -0.32 0.90 16 33 H 0.03 0.71 7.54 -51.93 -0.39 0.32 16 34 H 0.00 0.02 6.17 -51.93 -0.32 -0.30 16 35 H 0.05 1.35 6.90 -51.92 -0.36 1.00 16 36 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.07 1.43 7.20 -51.93 -0.37 1.05 16 38 H 0.07 1.50 8.08 -51.93 -0.42 1.08 16 LS Contribution 319.06 15.07 4.81 4.81 Total: -1.00 -30.70 319.06 -5.58 -36.27 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -4.99 Total: -3.14 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: -0.07 Total: 11.55 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -0.49 Total: -48.84 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 9 Polarization: -6.82 SS G_CDS: 0.11 Total: -6.71 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.70 -5.58 -36.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972075496.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.825 kcal (2) G-P(sol) polarization free energy of solvation -30.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds