Wall clock time and date at job start Tue Mar 31 2020 07:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47428 * 2 1 4 4 C 1.50707 * 109.46836 * 119.99717 * 2 1 3 5 5 O 1.21278 * 119.99835 * 85.46891 * 4 2 1 6 6 N 1.34774 * 120.00156 * 265.46261 * 4 2 1 7 7 C 1.47024 * 125.64806 * 355.55726 * 6 4 2 8 8 C 1.54323 * 107.27456 * 178.89555 * 7 6 4 9 9 C 1.55164 * 102.93997 * 337.80920 * 8 7 6 10 10 H 1.08991 * 110.99960 * 277.38740 * 9 8 7 11 11 N 1.46497 * 111.00292 * 153.57223 * 9 8 7 12 12 C 1.46497 * 120.00083 * 304.58030 * 11 9 8 13 13 C 1.36937 * 120.00168 * 124.57879 * 11 9 8 14 14 H 1.08005 * 119.99611 * 343.79842 * 13 11 9 15 15 C 1.38806 * 120.00344 * 164.06475 * 13 11 9 16 16 N 1.31615 * 120.00022 * 344.25266 * 15 13 11 17 17 Si 1.86797 * 120.00222 * 164.25366 * 15 13 11 18 18 H 1.48506 * 109.47365 * 90.00004 * 17 15 13 19 19 H 1.48501 * 109.47259 * 210.00331 * 17 15 13 20 20 H 1.48507 * 109.47112 * 330.00135 * 17 15 13 21 21 C 1.47467 * 125.63105 * 175.46570 * 6 4 2 22 22 C 1.53000 * 109.47191 * 239.99463 * 2 1 3 23 23 F 1.39899 * 109.47116 * 300.00132 * 22 2 1 24 24 F 1.39901 * 109.46934 * 60.00420 * 22 2 1 25 25 F 1.39905 * 109.47046 * 180.02562 * 22 2 1 26 26 H 1.09010 * 109.46609 * 63.99361 * 1 2 3 27 27 H 1.08998 * 109.47223 * 183.99747 * 1 2 3 28 28 H 1.09004 * 109.47280 * 303.99833 * 1 2 3 29 29 H 1.09003 * 109.88188 * 59.48021 * 7 6 4 30 30 H 1.08998 * 109.88246 * 298.31797 * 7 6 4 31 31 H 1.08996 * 110.72381 * 219.44183 * 8 7 6 32 32 H 1.09004 * 110.71715 * 96.16806 * 8 7 6 33 33 H 1.09001 * 109.47356 * 265.19749 * 12 11 9 34 34 H 1.09000 * 109.47310 * 25.19585 * 12 11 9 35 35 H 1.09007 * 109.46992 * 145.20015 * 12 11 9 36 36 H 0.97004 * 120.00423 * 179.97438 * 16 15 13 37 37 H 1.08997 * 110.34637 * 85.33087 * 21 6 4 38 38 H 1.08997 * 110.40246 * 322.99288 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.1561 -1.9168 1.2262 6 7 2.3439 -0.0050 2.3359 7 6 2.3297 1.4608 2.4493 8 6 2.7276 1.8122 3.8983 9 6 2.3942 0.5112 4.6754 10 1 1.3360 0.4705 4.9332 11 7 3.2288 0.3864 5.8729 12 6 4.6884 0.4314 5.7565 13 6 2.6446 0.2277 7.1012 14 1 1.5965 0.4525 7.2337 15 6 3.4005 -0.2167 8.1772 16 7 4.5739 -0.7761 7.9707 17 14 2.7526 -0.0210 9.9182 18 1 1.9671 -1.2245 10.2924 19 1 3.8931 0.1370 10.8560 20 1 1.8823 1.1802 9.9904 21 6 2.7538 -0.5761 3.6322 22 6 2.0400 -0.7214 -1.2492 23 9 1.5736 -2.0403 -1.2491 24 9 1.5737 -0.0619 -2.3915 25 9 3.4390 -0.7219 -1.2488 26 1 -0.3633 0.4507 -0.9237 27 1 -0.3633 -1.0251 0.0716 28 1 -0.3634 0.5747 0.8520 29 1 1.3297 1.8393 2.2373 30 1 3.0474 1.8935 1.7524 31 1 2.1329 2.6466 4.2700 32 1 3.7922 2.0374 3.9620 33 1 5.0793 -0.5840 5.6917 34 1 4.9644 0.9849 4.8589 35 1 5.1077 0.9269 6.6322 36 1 5.1024 -1.0863 8.7227 37 1 3.8266 -0.7685 3.6393 38 1 2.2015 -1.4936 3.8349 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972075496.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:45 Heat of formation + Delta-G solvation = -178.452178 kcal Electronic energy + Delta-G solvation = -24818.153189 eV Core-core repulsion = 20666.831737 eV Total energy + Delta-G solvation = -4151.321452 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.17084 -48.69190 -48.59940 -41.31002 -39.07192 -36.62878 -35.08815 -33.37837 -31.24747 -29.51531 -28.08784 -27.50109 -25.85143 -24.18819 -23.39874 -20.99374 -20.63712 -19.71727 -19.45042 -18.96938 -18.35165 -18.07337 -17.47129 -16.55171 -16.32974 -15.71910 -15.48885 -15.43267 -15.08902 -15.06237 -14.84188 -14.80745 -14.71953 -14.41633 -14.26554 -14.16752 -13.98375 -13.48701 -13.29798 -13.14701 -12.98453 -12.76498 -12.50499 -12.41218 -12.38514 -12.15380 -12.06117 -11.78794 -11.39840 -11.09058 -10.61506 -9.76703 -8.87847 -7.84166 -5.27376 1.18153 1.48571 1.49061 1.53616 1.59619 1.89388 2.51596 2.62965 2.91654 2.96415 3.28661 3.48080 3.53786 3.80464 3.90298 3.91663 4.01677 4.20186 4.34331 4.43848 4.62123 4.65894 4.68597 4.78893 4.85376 5.01258 5.09771 5.12945 5.23819 5.33039 5.45168 5.62730 5.74174 6.28539 6.38444 6.88068 7.12760 7.84945 8.26023 9.19767 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.035511 B = 0.003470 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.304468 B = 8066.645930 C = 8130.700590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.145 4.145 3 H 0.170 0.830 4 C 0.525 3.475 5 O -0.576 6.576 6 N -0.604 5.604 7 C 0.097 3.903 8 C -0.140 4.140 9 C 0.166 3.834 10 H 0.080 0.920 11 N -0.602 5.602 12 C 0.178 3.822 13 C -0.264 4.264 14 H 0.081 0.919 15 C -0.055 4.055 16 N -0.941 5.941 17 Si 0.969 3.031 18 H -0.289 1.289 19 H -0.296 1.296 20 H -0.265 1.265 21 C 0.096 3.904 22 C 0.464 3.536 23 F -0.183 7.183 24 F -0.170 7.170 25 F -0.192 7.192 26 H 0.107 0.893 27 H 0.058 0.942 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.071 0.929 33 H -0.008 1.008 34 H 0.035 0.965 35 H 0.026 0.974 36 H 0.247 0.753 37 H 0.047 0.953 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.184 9.314 -18.288 22.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 H 0.188 0.812 4 C 0.313 3.687 5 O -0.455 6.455 6 N -0.336 5.336 7 C -0.024 4.024 8 C -0.180 4.180 9 C 0.057 3.943 10 H 0.099 0.901 11 N -0.323 5.323 12 C 0.034 3.966 13 C -0.394 4.394 14 H 0.099 0.901 15 C -0.250 4.250 16 N -0.588 5.588 17 Si 0.798 3.202 18 H -0.216 1.216 19 H -0.223 1.223 20 H -0.190 1.190 21 C -0.030 4.030 22 C 0.410 3.590 23 F -0.164 7.164 24 F -0.151 7.151 25 F -0.173 7.173 26 H 0.126 0.874 27 H 0.077 0.923 28 H 0.123 0.877 29 H 0.127 0.873 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.090 0.910 33 H 0.010 0.990 34 H 0.054 0.946 35 H 0.044 0.956 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.000 8.590 -18.235 21.687 hybrid contribution 0.468 -0.897 1.060 1.465 sum -7.533 7.694 -17.175 20.271 Atomic orbital electron populations 1.21858 0.86840 1.04478 1.06871 1.22666 1.03101 1.03306 0.87676 0.81249 1.20099 0.77652 0.86790 0.84203 1.90788 1.55218 1.15985 1.83528 1.48480 1.65316 1.09452 1.10387 1.22453 1.04295 0.77559 0.98083 1.23081 1.02836 0.98715 0.93337 1.21633 0.95146 0.92633 0.84911 0.90148 1.44122 1.02054 1.83870 1.02293 1.20530 0.82751 0.96708 0.96636 1.19657 0.95724 1.37579 0.86429 0.90141 1.25687 0.97763 0.99289 1.02223 1.70298 1.14557 1.43714 1.30242 0.85242 0.76949 0.78079 0.79961 1.21637 1.22253 1.18985 1.22786 0.98727 0.98493 0.82976 1.20189 0.75168 0.77868 0.85814 1.93211 1.88278 1.38180 1.96734 1.93198 1.88269 1.80439 1.53176 1.93189 1.30842 1.96456 1.96846 0.87389 0.92274 0.87683 0.87287 0.88631 0.88068 0.91041 0.98966 0.94627 0.95569 0.94358 0.93480 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.93 71.98 0.64 -1.22 16 2 C -0.15 -2.63 2.41 -11.54 -0.03 -2.65 16 3 H 0.17 1.69 7.00 -2.38 -0.02 1.68 16 4 C 0.52 15.08 6.58 87.66 0.58 15.66 16 5 O -0.58 -22.56 15.65 -3.02 -0.05 -22.60 16 6 N -0.60 -16.71 3.33 -811.69 -2.70 -19.41 16 7 C 0.10 1.76 5.97 86.73 0.52 2.28 16 8 C -0.14 -3.50 6.49 31.79 0.21 -3.29 16 9 C 0.17 5.96 3.54 46.39 0.16 6.12 16 10 H 0.08 2.85 7.91 -2.39 -0.02 2.83 16 11 N -0.60 -28.31 2.97 -695.02 -2.06 -30.38 16 12 C 0.18 8.52 7.72 127.77 0.99 9.50 16 13 C -0.26 -13.82 9.69 84.03 0.81 -13.01 16 14 H 0.08 3.99 7.81 -2.91 -0.02 3.97 16 15 C -0.06 -3.00 5.07 84.86 0.43 -2.57 16 16 N -0.94 -55.16 10.46 21.65 0.23 -54.93 16 17 Si 0.97 43.94 29.58 68.60 2.03 45.97 16 18 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 19 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 21 C 0.10 3.53 6.48 86.85 0.56 4.09 16 22 C 0.46 10.46 2.57 71.98 0.18 10.65 16 23 F -0.18 -5.19 15.46 44.97 0.70 -4.49 16 24 F -0.17 -3.11 16.73 44.97 0.75 -2.36 16 25 F -0.19 -5.03 17.02 44.97 0.77 -4.27 16 26 H 0.11 0.88 7.69 -2.38 -0.02 0.86 16 27 H 0.06 1.04 7.92 -2.39 -0.02 1.02 16 28 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.10 1.26 7.98 -2.39 -0.02 1.24 16 31 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.07 1.94 6.16 -2.38 -0.01 1.92 16 33 H -0.01 -0.44 7.54 -2.39 -0.02 -0.45 16 34 H 0.04 1.41 6.17 -2.39 -0.01 1.40 16 35 H 0.03 1.36 6.90 -2.38 -0.02 1.34 16 36 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 37 H 0.05 1.95 7.20 -2.39 -0.02 1.94 16 38 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 Total: -1.00 -71.30 319.06 5.79 -65.50 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: 1.08 Total: 1.42 kcal Atomic # 6 Polarization: 20.49 SS G_CDS: 5.06 Total: 25.55 kcal Atomic # 7 Polarization: -100.19 SS G_CDS: -4.54 Total: -104.72 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.05 Total: -22.60 kcal Atomic # 9 Polarization: -13.34 SS G_CDS: 2.21 Total: -11.12 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -71.30 5.79 -65.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972075496.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.947 kcal (2) G-P(sol) polarization free energy of solvation -71.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds