Wall clock time and date at job start Tue Mar 31 2020 07:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47432 * 2 1 4 4 C 1.50694 * 109.47075 * 239.99781 * 2 1 3 5 5 O 1.21279 * 120.00251 * 263.93143 * 4 2 1 6 6 N 1.34776 * 120.00220 * 83.92888 * 4 2 1 7 7 C 1.47018 * 125.65544 * 174.38408 * 6 4 2 8 8 C 1.54324 * 107.27608 * 181.07857 * 7 6 4 9 9 C 1.55442 * 102.96658 * 22.19132 * 8 7 6 10 10 H 1.08998 * 111.01538 * 82.52199 * 9 8 7 11 11 N 1.46507 * 111.11690 * 206.46761 * 9 8 7 12 12 C 1.46491 * 120.00032 * 52.09990 * 11 9 8 13 13 C 1.36939 * 119.99473 * 232.10085 * 11 9 8 14 14 H 1.07995 * 120.00239 * 24.38876 * 13 11 9 15 15 C 1.38809 * 119.99600 * 204.37761 * 13 11 9 16 16 N 1.31621 * 120.00207 * 0.15386 * 15 13 11 17 17 Si 1.86797 * 119.99825 * 180.14532 * 15 13 11 18 18 H 1.48498 * 109.47213 * 60.00878 * 17 15 13 19 19 H 1.48507 * 109.47399 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47279 * 300.00541 * 17 15 13 21 21 C 1.47426 * 125.64353 * 354.40104 * 6 4 2 22 22 C 1.53001 * 109.46855 * 119.99967 * 2 1 3 23 23 F 1.39902 * 109.47205 * 179.97438 * 22 2 1 24 24 F 1.39897 * 109.47598 * 299.99923 * 22 2 1 25 25 F 1.39905 * 109.47030 * 59.99827 * 22 2 1 26 26 H 1.08998 * 109.47699 * 183.67859 * 1 2 3 27 27 H 1.09004 * 109.46890 * 303.68117 * 1 2 3 28 28 H 1.09000 * 109.46985 * 63.67605 * 1 2 3 29 29 H 1.09001 * 109.87914 * 300.49954 * 7 6 4 30 30 H 1.09006 * 109.88105 * 61.65745 * 7 6 4 31 31 H 1.08994 * 110.71853 * 140.55441 * 8 7 6 32 32 H 1.08998 * 110.72052 * 263.65143 * 8 7 6 33 33 H 1.08998 * 109.47329 * 95.66891 * 12 11 9 34 34 H 1.08996 * 109.47129 * 215.67200 * 12 11 9 35 35 H 1.09001 * 109.47465 * 335.67094 * 12 11 9 36 36 H 0.96995 * 120.00090 * 179.97438 * 16 15 13 37 37 H 1.08998 * 110.37185 * 274.69274 * 21 6 4 38 38 H 1.09003 * 110.36855 * 36.91027 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.3391 -1.8823 -1.1713 6 7 2.1406 -0.0436 -2.3966 7 6 2.7214 -0.5763 -3.6377 8 6 2.6555 0.5471 -4.6937 9 6 2.5584 1.8344 -3.8279 10 1 3.5443 2.1533 -3.4897 11 7 1.8817 2.9105 -4.5562 12 6 0.5757 2.6684 -5.1740 13 6 2.4701 4.1427 -4.6593 14 1 3.5425 4.2379 -4.5741 15 6 1.6882 5.2694 -4.8735 16 7 0.3810 5.1538 -4.9745 17 14 2.4912 6.9498 -5.0183 18 1 3.4392 6.9486 -6.1613 19 1 1.4458 7.9804 -5.2429 20 1 3.2268 7.2565 -3.7653 21 6 1.6963 1.3411 -2.6390 22 6 2.0399 -0.7213 1.2493 23 9 3.4390 -0.7218 1.2491 24 9 1.5737 -0.0618 2.3916 25 9 1.5735 -2.0403 1.2493 26 1 -0.3634 -1.0255 0.0659 27 1 -0.3633 0.5699 0.8552 28 1 -0.3633 0.4557 -0.9211 29 1 3.7587 -0.8647 -3.4674 30 1 2.1458 -1.4378 -3.9764 31 1 3.5603 0.5587 -5.3014 32 1 1.7720 0.4344 -5.3220 33 1 -0.2130 2.9974 -4.4974 34 1 0.5075 3.2242 -6.1091 35 1 0.4608 1.6033 -5.3753 36 1 -0.1655 5.9412 -5.1238 37 1 0.6391 1.3596 -2.9035 38 1 1.8771 1.9572 -1.7581 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972075497.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:49 Heat of formation + Delta-G solvation = -160.394297 kcal Electronic energy + Delta-G solvation = -24999.806318 eV Core-core repulsion = 20849.267915 eV Total energy + Delta-G solvation = -4150.538404 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.11590 -47.64567 -47.50869 -40.08668 -37.66592 -34.88755 -34.13990 -31.66430 -29.92001 -27.94570 -26.59569 -26.16645 -24.44096 -23.10986 -21.85916 -19.55506 -19.47447 -18.64809 -18.38991 -17.37087 -17.06089 -16.88027 -15.90946 -15.30005 -14.90996 -14.50146 -14.36550 -14.08326 -13.98409 -13.75284 -13.67705 -13.53914 -13.35812 -13.30939 -13.04215 -12.75579 -12.54762 -12.34345 -12.12684 -11.96772 -11.52598 -11.44567 -10.97472 -10.92016 -10.62250 -10.49615 -10.37270 -10.07291 -9.92959 -9.82141 -8.69003 -8.50766 -6.93308 -5.87160 -3.36926 2.35015 2.61315 3.00296 3.30446 3.36412 3.36555 3.62861 3.96718 3.98418 4.35422 4.52498 4.72469 4.80529 5.04110 5.07741 5.28339 5.34389 5.39489 5.44882 5.51608 5.65797 5.78453 5.82467 5.95215 6.05745 6.22572 6.37170 6.42539 6.67491 6.75318 7.32249 7.53873 7.61914 7.70758 8.04374 8.25636 9.09500 9.69131 10.17585 11.16543 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.021721 B = 0.004150 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.760343 B = 6745.393316 C = 7275.922162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.160 4.160 3 H 0.136 0.864 4 C 0.535 3.465 5 O -0.534 6.534 6 N -0.605 5.605 7 C 0.114 3.886 8 C -0.155 4.155 9 C 0.175 3.825 10 H 0.080 0.920 11 N -0.586 5.586 12 C 0.161 3.839 13 C -0.263 4.263 14 H 0.070 0.930 15 C 0.009 3.991 16 N -0.908 5.908 17 Si 0.908 3.092 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.282 1.282 21 C 0.070 3.930 22 C 0.472 3.528 23 F -0.179 7.179 24 F -0.181 7.181 25 F -0.168 7.168 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.029 0.971 34 H 0.052 0.948 35 H -0.001 1.001 36 H 0.255 0.745 37 H 0.075 0.925 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.522 -9.214 7.993 12.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.183 4.183 3 H 0.154 0.846 4 C 0.321 3.679 5 O -0.411 6.411 6 N -0.338 5.338 7 C -0.009 4.009 8 C -0.195 4.195 9 C 0.064 3.936 10 H 0.098 0.902 11 N -0.307 5.307 12 C 0.017 3.983 13 C -0.392 4.392 14 H 0.088 0.912 15 C -0.190 4.190 16 N -0.552 5.552 17 Si 0.738 3.262 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.208 1.208 21 C -0.054 4.054 22 C 0.417 3.583 23 F -0.161 7.161 24 F -0.163 7.163 25 F -0.149 7.149 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.017 0.983 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.536 -9.714 8.037 12.619 hybrid contribution 0.370 1.006 0.174 1.086 sum 0.906 -8.707 8.212 12.003 Atomic orbital electron populations 1.21785 0.88972 1.04508 1.05152 1.22588 1.01717 1.02918 0.91034 0.84648 1.19316 0.78840 0.86463 0.83290 1.90773 1.50411 1.15164 1.84758 1.48404 1.59475 1.15938 1.09961 1.21943 0.98159 0.97235 0.83516 1.23282 1.03212 0.95429 0.97557 1.21483 0.95334 0.87854 0.88962 0.90176 1.43833 1.20264 1.08152 1.58440 1.20915 0.86191 0.93166 0.98054 1.19190 0.91193 0.83194 1.45659 0.91195 1.25132 0.95350 0.98073 1.00419 1.70054 1.03291 1.28524 1.53351 0.86290 0.78213 0.83606 0.78140 1.20909 1.21521 1.20830 1.23416 1.00859 0.79676 1.01495 1.19845 0.75664 0.78061 0.84711 1.93200 1.29705 1.96425 1.96726 1.93179 1.88535 1.80896 1.53677 1.93218 1.88187 1.36874 1.96630 0.90617 0.89907 0.89454 0.91620 0.91788 0.90394 0.90180 0.95254 0.92933 0.98306 0.93474 0.90701 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.93 37.16 0.33 -1.20 16 2 C -0.16 -1.99 2.14 -91.77 -0.20 -2.18 16 3 H 0.14 1.47 6.83 -51.93 -0.35 1.12 16 4 C 0.53 8.19 6.70 -10.99 -0.07 8.12 16 5 O -0.53 -9.74 15.49 5.56 0.09 -9.66 16 6 N -0.60 -9.05 3.33 -170.52 -0.57 -9.62 16 7 C 0.11 1.63 6.87 -3.07 -0.02 1.60 16 8 C -0.15 -2.34 6.48 -24.74 -0.16 -2.50 16 9 C 0.17 3.11 3.56 -65.62 -0.23 2.87 16 10 H 0.08 1.44 7.95 -51.93 -0.41 1.03 16 11 N -0.59 -13.07 2.97 -170.86 -0.51 -13.58 16 12 C 0.16 3.56 7.83 59.84 0.47 4.03 16 13 C -0.26 -6.60 9.64 -15.06 -0.15 -6.74 16 14 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 15 C 0.01 0.23 5.33 -17.43 -0.09 0.14 16 16 N -0.91 -24.48 10.20 55.49 0.57 -23.91 16 17 Si 0.91 20.49 29.55 -169.99 -5.02 15.46 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 C 0.07 1.10 6.00 -2.52 -0.02 1.09 16 22 C 0.47 6.28 2.48 37.16 0.09 6.37 16 23 F -0.18 -2.62 16.95 2.25 0.04 -2.58 16 24 F -0.18 -2.21 16.87 2.25 0.04 -2.17 16 25 F -0.17 -2.47 15.38 2.25 0.03 -2.43 16 26 H 0.07 0.80 7.70 -51.93 -0.40 0.40 16 27 H 0.08 0.72 7.91 -51.93 -0.41 0.31 16 28 H 0.09 0.91 7.80 -51.93 -0.41 0.50 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.08 1.25 6.01 -51.93 -0.31 0.94 16 33 H 0.03 0.70 7.39 -51.93 -0.38 0.32 16 34 H 0.05 1.30 7.10 -51.93 -0.37 0.93 16 35 H 0.00 -0.03 5.98 -51.93 -0.31 -0.34 16 36 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 37 H 0.07 1.23 7.31 -51.93 -0.38 0.85 16 38 H 0.07 1.07 6.81 -51.93 -0.35 0.72 16 LS Contribution 317.34 15.07 4.78 4.78 Total: -1.00 -28.55 317.34 -5.50 -34.05 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -4.90 Total: -1.97 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: -0.04 Total: 11.61 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -0.51 Total: -47.11 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 9 Polarization: -7.29 SS G_CDS: 0.11 Total: -7.18 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.55 -5.50 -34.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972075497.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.339 kcal (2) G-P(sol) polarization free energy of solvation -28.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds