Wall clock time and date at job start Tue Mar 31 2020 07:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47432 * 2 1 4 4 C 1.50694 * 109.47075 * 239.99781 * 2 1 3 5 5 O 1.21279 * 120.00251 * 263.93143 * 4 2 1 6 6 N 1.34776 * 120.00220 * 83.92888 * 4 2 1 7 7 C 1.47018 * 125.65544 * 174.38408 * 6 4 2 8 8 C 1.54324 * 107.27608 * 181.07857 * 7 6 4 9 9 C 1.55442 * 102.96658 * 22.19132 * 8 7 6 10 10 H 1.08998 * 111.01538 * 82.52199 * 9 8 7 11 11 N 1.46507 * 111.11690 * 206.46761 * 9 8 7 12 12 C 1.46491 * 120.00032 * 52.09990 * 11 9 8 13 13 C 1.36939 * 119.99473 * 232.10085 * 11 9 8 14 14 H 1.07995 * 120.00239 * 24.38876 * 13 11 9 15 15 C 1.38809 * 119.99600 * 204.37761 * 13 11 9 16 16 N 1.31621 * 120.00207 * 0.15386 * 15 13 11 17 17 Si 1.86797 * 119.99825 * 180.14532 * 15 13 11 18 18 H 1.48498 * 109.47213 * 60.00878 * 17 15 13 19 19 H 1.48507 * 109.47399 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47279 * 300.00541 * 17 15 13 21 21 C 1.47426 * 125.64353 * 354.40104 * 6 4 2 22 22 C 1.53001 * 109.46855 * 119.99967 * 2 1 3 23 23 F 1.39902 * 109.47205 * 179.97438 * 22 2 1 24 24 F 1.39897 * 109.47598 * 299.99923 * 22 2 1 25 25 F 1.39905 * 109.47030 * 59.99827 * 22 2 1 26 26 H 1.08998 * 109.47699 * 183.67859 * 1 2 3 27 27 H 1.09004 * 109.46890 * 303.68117 * 1 2 3 28 28 H 1.09000 * 109.46985 * 63.67605 * 1 2 3 29 29 H 1.09001 * 109.87914 * 300.49954 * 7 6 4 30 30 H 1.09006 * 109.88105 * 61.65745 * 7 6 4 31 31 H 1.08994 * 110.71853 * 140.55441 * 8 7 6 32 32 H 1.08998 * 110.72052 * 263.65143 * 8 7 6 33 33 H 1.08998 * 109.47329 * 95.66891 * 12 11 9 34 34 H 1.08996 * 109.47129 * 215.67200 * 12 11 9 35 35 H 1.09001 * 109.47465 * 335.67094 * 12 11 9 36 36 H 0.96995 * 120.00090 * 179.97438 * 16 15 13 37 37 H 1.08998 * 110.37185 * 274.69274 * 21 6 4 38 38 H 1.09003 * 110.36855 * 36.91027 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.3391 -1.8823 -1.1713 6 7 2.1406 -0.0436 -2.3966 7 6 2.7214 -0.5763 -3.6377 8 6 2.6555 0.5471 -4.6937 9 6 2.5584 1.8344 -3.8279 10 1 3.5443 2.1533 -3.4897 11 7 1.8817 2.9105 -4.5562 12 6 0.5757 2.6684 -5.1740 13 6 2.4701 4.1427 -4.6593 14 1 3.5425 4.2379 -4.5741 15 6 1.6882 5.2694 -4.8735 16 7 0.3810 5.1538 -4.9745 17 14 2.4912 6.9498 -5.0183 18 1 3.4392 6.9486 -6.1613 19 1 1.4458 7.9804 -5.2429 20 1 3.2268 7.2565 -3.7653 21 6 1.6963 1.3411 -2.6390 22 6 2.0399 -0.7213 1.2493 23 9 3.4390 -0.7218 1.2491 24 9 1.5737 -0.0618 2.3916 25 9 1.5735 -2.0403 1.2493 26 1 -0.3634 -1.0255 0.0659 27 1 -0.3633 0.5699 0.8552 28 1 -0.3633 0.4557 -0.9211 29 1 3.7587 -0.8647 -3.4674 30 1 2.1458 -1.4378 -3.9764 31 1 3.5603 0.5587 -5.3014 32 1 1.7720 0.4344 -5.3220 33 1 -0.2130 2.9974 -4.4974 34 1 0.5075 3.2242 -6.1091 35 1 0.4608 1.6033 -5.3753 36 1 -0.1655 5.9412 -5.1238 37 1 0.6391 1.3596 -2.9035 38 1 1.8771 1.9572 -1.7581 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972075497.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:49 Heat of formation + Delta-G solvation = -176.452523 kcal Electronic energy + Delta-G solvation = -25000.502655 eV Core-core repulsion = 20849.267915 eV Total energy + Delta-G solvation = -4151.234741 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.17471 -48.68980 -48.60050 -41.32726 -39.04610 -36.52598 -35.18508 -33.34571 -31.31601 -29.35155 -28.01385 -27.53332 -25.70944 -24.64935 -23.05749 -21.00569 -20.65889 -19.73623 -19.46558 -18.93729 -18.35241 -18.05152 -17.42381 -16.54396 -16.41545 -15.72573 -15.47117 -15.42150 -15.06065 -14.99852 -14.82124 -14.80557 -14.74111 -14.44033 -14.32221 -14.14378 -13.94973 -13.57194 -13.30319 -13.10924 -12.97352 -12.70039 -12.54910 -12.40664 -12.32651 -12.13608 -11.99434 -11.79598 -11.39919 -11.10672 -10.58271 -9.78183 -8.74857 -7.80005 -5.30139 1.21176 1.48350 1.52687 1.53257 1.59185 1.88168 2.52112 2.59921 2.87210 2.94793 3.33231 3.40611 3.70339 3.77085 3.82080 3.91011 3.97611 4.20726 4.35277 4.43248 4.55635 4.61277 4.69378 4.80888 4.86275 5.02421 5.05421 5.13090 5.23727 5.33791 5.49897 5.69469 5.84417 6.30787 6.36842 6.83935 7.19608 7.88414 8.31570 9.21838 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.021721 B = 0.004150 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.760343 B = 6745.393316 C = 7275.922162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.156 4.156 3 H 0.154 0.846 4 C 0.534 3.466 5 O -0.565 6.565 6 N -0.603 5.603 7 C 0.115 3.885 8 C -0.141 4.141 9 C 0.165 3.835 10 H 0.079 0.921 11 N -0.600 5.600 12 C 0.178 3.822 13 C -0.265 4.265 14 H 0.074 0.926 15 C -0.043 4.043 16 N -0.935 5.935 17 Si 0.965 3.035 18 H -0.280 1.280 19 H -0.297 1.297 20 H -0.276 1.276 21 C 0.084 3.916 22 C 0.471 3.529 23 F -0.189 7.189 24 F -0.173 7.173 25 F -0.178 7.178 26 H 0.072 0.928 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.007 0.993 34 H 0.019 0.981 35 H 0.029 0.971 36 H 0.248 0.752 37 H 0.070 0.930 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.048 -9.449 8.621 12.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 H 0.172 0.828 4 C 0.321 3.679 5 O -0.444 6.444 6 N -0.335 5.335 7 C -0.007 4.007 8 C -0.180 4.180 9 C 0.056 3.944 10 H 0.097 0.903 11 N -0.322 5.322 12 C 0.034 3.966 13 C -0.395 4.395 14 H 0.092 0.908 15 C -0.238 4.238 16 N -0.582 5.582 17 Si 0.793 3.207 18 H -0.206 1.206 19 H -0.224 1.224 20 H -0.202 1.202 21 C -0.041 4.041 22 C 0.417 3.583 23 F -0.170 7.170 24 F -0.154 7.154 25 F -0.159 7.159 26 H 0.091 0.909 27 H 0.122 0.878 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.025 0.975 34 H 0.038 0.962 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.088 -9.973 8.678 13.264 hybrid contribution 0.259 0.996 -0.015 1.030 sum 1.347 -8.976 8.662 12.547 Atomic orbital electron populations 1.21831 0.87338 1.04772 1.06198 1.22650 1.02957 1.03144 0.89060 0.82826 1.19734 0.78106 0.86150 0.83870 1.90763 1.51814 1.16588 1.85254 1.48396 1.59303 1.15540 1.10283 1.21969 0.98756 0.96991 0.82974 1.23137 1.03606 0.93931 0.97368 1.21632 0.95111 0.87663 0.89997 0.90268 1.43937 1.20239 1.08431 1.59576 1.20597 0.85855 0.94274 0.95912 1.19509 0.91517 0.84344 1.44147 0.90849 1.25770 0.95827 1.00976 1.01243 1.70218 1.04274 1.28607 1.55079 0.85390 0.77103 0.80024 0.78160 1.20627 1.22386 1.20223 1.23119 0.99940 0.80075 1.00930 1.19970 0.75232 0.77782 0.85350 1.93181 1.30565 1.96444 1.96810 1.93195 1.88353 1.80607 1.53279 1.93198 1.88247 1.37755 1.96715 0.90944 0.87815 0.89290 0.90866 0.91142 0.89293 0.90576 0.97457 0.96168 0.95280 0.94272 0.91152 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.93 71.98 0.64 -2.02 16 2 C -0.16 -3.52 2.14 -11.54 -0.02 -3.55 16 3 H 0.15 2.90 6.83 -2.39 -0.02 2.88 16 4 C 0.53 15.34 6.70 87.66 0.59 15.93 16 5 O -0.56 -19.85 15.49 -3.03 -0.05 -19.89 16 6 N -0.60 -16.71 3.33 -811.78 -2.70 -19.41 16 7 C 0.12 3.02 6.87 86.73 0.60 3.62 16 8 C -0.14 -3.93 6.48 31.88 0.21 -3.72 16 9 C 0.17 5.57 3.56 46.49 0.17 5.74 16 10 H 0.08 2.69 7.95 -2.39 -0.02 2.67 16 11 N -0.60 -26.21 2.97 -694.47 -2.06 -28.28 16 12 C 0.18 7.85 7.83 127.77 1.00 8.85 16 13 C -0.27 -13.11 9.64 84.03 0.81 -12.30 16 14 H 0.07 3.51 7.81 -2.91 -0.02 3.48 16 15 C -0.04 -2.20 5.33 84.86 0.45 -1.75 16 16 N -0.94 -51.03 10.20 21.65 0.22 -50.81 16 17 Si 0.96 41.98 29.55 68.60 2.03 44.01 16 18 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.30 -13.23 7.11 99.48 0.71 -12.52 16 20 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 21 C 0.08 2.45 6.00 86.86 0.52 2.97 16 22 C 0.47 11.73 2.48 71.98 0.18 11.91 16 23 F -0.19 -5.25 16.95 44.97 0.76 -4.49 16 24 F -0.17 -3.84 16.87 44.97 0.76 -3.08 16 25 F -0.18 -5.02 15.38 44.97 0.69 -4.33 16 26 H 0.07 1.40 7.70 -2.39 -0.02 1.38 16 27 H 0.10 1.49 7.91 -2.38 -0.02 1.48 16 28 H 0.09 1.64 7.80 -2.39 -0.02 1.62 16 29 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.08 2.21 6.01 -2.39 -0.01 2.19 16 33 H 0.01 0.34 7.39 -2.39 -0.02 0.33 16 34 H 0.02 0.99 7.10 -2.39 -0.02 0.97 16 35 H 0.03 1.08 5.98 -2.39 -0.01 1.06 16 36 H 0.25 13.34 8.31 -92.71 -0.77 12.57 16 37 H 0.07 2.17 7.31 -2.39 -0.02 2.15 16 38 H 0.08 2.25 6.81 -2.39 -0.02 2.23 16 Total: -1.00 -60.26 317.34 5.87 -54.39 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: 1.08 Total: 6.21 kcal Atomic # 6 Polarization: 20.54 SS G_CDS: 5.14 Total: 25.68 kcal Atomic # 7 Polarization: -93.96 SS G_CDS: -4.54 Total: -98.50 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.05 Total: -19.89 kcal Atomic # 9 Polarization: -14.11 SS G_CDS: 2.21 Total: -11.90 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -60.26 5.87 -54.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972075497.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.059 kcal (2) G-P(sol) polarization free energy of solvation -60.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds