Wall clock time and date at job start Tue Mar 31 2020 07:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46909 * 2 1 4 4 C 1.50697 * 109.47035 * 240.00337 * 2 1 3 5 5 O 1.21286 * 119.99775 * 325.06128 * 4 2 1 6 6 N 1.34773 * 120.00154 * 145.33787 * 4 2 1 7 7 C 1.46933 * 120.62828 * 4.67340 * 6 4 2 8 8 C 1.53623 * 108.53992 * 126.37157 * 7 6 4 9 9 C 1.53038 * 109.24254 * 54.85618 * 8 7 6 10 10 N 1.46504 * 109.45841 * 178.48525 * 9 8 7 11 11 C 1.36937 * 120.00248 * 275.06986 * 10 9 8 12 12 H 1.08000 * 120.00094 * 0.02562 * 11 10 9 13 13 C 1.38807 * 119.99925 * 179.97438 * 11 10 9 14 14 N 1.31627 * 120.00141 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00195 * 180.02562 * 13 11 10 16 16 H 1.48490 * 109.47327 * 89.99851 * 15 13 11 17 17 H 1.48504 * 109.47259 * 210.00461 * 15 13 11 18 18 H 1.48505 * 109.46680 * 329.99601 * 15 13 11 19 19 C 1.53034 * 109.53959 * 298.51020 * 9 8 7 20 20 C 1.46924 * 120.63231 * 184.95690 * 6 4 2 21 21 C 1.53001 * 109.47247 * 120.00224 * 2 1 3 22 22 F 1.39890 * 109.47090 * 180.02562 * 21 2 1 23 23 F 1.39897 * 109.47019 * 300.00406 * 21 2 1 24 24 F 1.39908 * 109.46761 * 59.99644 * 21 2 1 25 25 H 1.08998 * 109.47140 * 305.00049 * 1 2 3 26 26 H 1.09002 * 109.47147 * 64.99883 * 1 2 3 27 27 H 1.09004 * 109.47107 * 184.99722 * 1 2 3 28 28 H 1.09002 * 109.58623 * 246.20174 * 7 6 4 29 29 H 1.09000 * 109.58586 * 6.62617 * 7 6 4 30 30 H 1.08999 * 109.63662 * 294.86473 * 8 7 6 31 31 H 1.08999 * 109.42895 * 174.72380 * 8 7 6 32 32 H 1.09007 * 109.45077 * 58.52337 * 9 8 7 33 33 H 0.97001 * 119.99594 * 95.06743 * 10 9 8 34 34 H 0.96998 * 120.00200 * 179.97438 * 14 13 11 35 35 H 1.09002 * 109.49752 * 301.41172 * 19 9 8 36 36 H 1.09003 * 109.49857 * 181.31721 * 19 9 8 37 37 H 1.09003 * 109.58720 * 353.36882 * 20 6 4 38 38 H 1.09001 * 109.58930 * 113.65588 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 1.4226 -1.6606 -1.6734 6 7 3.1621 -0.2931 -1.8355 7 6 3.9697 0.7861 -1.2507 8 6 5.4158 0.2891 -1.1032 9 6 5.9193 -0.2076 -2.4603 10 7 7.3103 -0.6493 -2.3329 11 6 8.3294 0.2599 -2.4334 12 1 8.1076 1.3027 -2.6062 13 6 9.6473 -0.1585 -2.3121 14 7 9.9175 -1.4292 -2.1001 15 14 11.0374 1.0818 -2.4485 16 1 11.3476 1.6276 -1.1028 17 1 12.2433 0.4150 -3.0023 18 1 10.6264 2.1888 -3.3491 19 6 5.0534 -1.3787 -2.9301 20 6 3.6062 -0.9045 -3.0955 21 6 2.0401 -0.7213 1.2492 22 9 3.4390 -0.7208 1.2495 23 9 1.5737 -0.0619 2.3915 24 9 1.5736 -2.0403 1.2491 25 1 -0.3633 0.5894 0.8418 26 1 -0.3633 0.4343 -0.9314 27 1 -0.3633 -1.0238 0.0895 28 1 3.9448 1.6571 -1.9056 29 1 3.5711 1.0512 -0.2714 30 1 5.4508 -0.5269 -0.3814 31 1 6.0472 1.1079 -0.7584 32 1 5.8606 0.6021 -3.1878 33 1 7.5095 -1.5858 -2.1773 34 1 10.8385 -1.7216 -2.0157 35 1 5.0919 -2.1790 -2.1911 36 1 5.4270 -1.7471 -3.8856 37 1 2.9678 -1.7554 -3.3337 38 1 3.5499 -0.1693 -3.8982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996890167.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:21 Heat of formation + Delta-G solvation = -180.152702 kcal Electronic energy + Delta-G solvation = -25194.035039 eV Core-core repulsion = 21042.639846 eV Total energy + Delta-G solvation = -4151.395192 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.29800 -47.79590 -47.72080 -40.35563 -37.60056 -34.64014 -34.16947 -32.03385 -30.83088 -29.30341 -26.75963 -25.26882 -23.77040 -23.10898 -22.14696 -20.31160 -19.36440 -18.84308 -18.48648 -17.72297 -17.17068 -17.05768 -15.80078 -15.02131 -14.90268 -14.65331 -14.62123 -14.15747 -14.11861 -13.90734 -13.86268 -13.76926 -13.62973 -13.47050 -13.37560 -13.19454 -12.80701 -12.34625 -12.09134 -12.02949 -11.70265 -11.48960 -11.01070 -10.91996 -10.84763 -10.54017 -10.26396 -9.98425 -9.86026 -9.70590 -8.94315 -8.66088 -7.01153 -5.80107 -3.09775 1.96983 2.71406 2.79986 3.40664 3.45633 3.47709 3.54031 3.73282 3.78869 4.30833 4.52784 4.55467 4.57094 4.97899 5.18552 5.24547 5.27206 5.30753 5.34089 5.47964 5.53884 5.64900 5.73253 5.86676 5.90157 6.16425 6.28506 6.33012 6.45401 6.54403 6.82732 7.00555 7.26152 7.65277 7.91734 8.37869 9.49184 10.06340 10.40905 11.42374 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.025409 B = 0.004052 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.720611 B = 6908.183162 C = 7354.702275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.165 4.165 3 H 0.135 0.865 4 C 0.518 3.482 5 O -0.524 6.524 6 N -0.595 5.595 7 C 0.102 3.898 8 C -0.150 4.150 9 C 0.179 3.821 10 N -0.724 5.724 11 C -0.242 4.242 12 H 0.071 0.929 13 C -0.012 4.012 14 N -0.932 5.932 15 Si 0.906 3.094 16 H -0.290 1.290 17 H -0.291 1.291 18 H -0.282 1.282 19 C -0.140 4.140 20 C 0.116 3.884 21 C 0.463 3.537 22 F -0.171 7.171 23 F -0.178 7.178 24 F -0.172 7.172 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.384 0.616 34 H 0.256 0.744 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.371 5.022 4.180 20.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.187 4.187 3 H 0.152 0.848 4 C 0.303 3.697 5 O -0.400 6.400 6 N -0.328 5.328 7 C -0.021 4.021 8 C -0.191 4.191 9 C 0.069 3.931 10 N -0.364 5.364 11 C -0.373 4.373 12 H 0.088 0.912 13 C -0.208 4.208 14 N -0.580 5.580 15 Si 0.737 3.263 16 H -0.217 1.217 17 H -0.218 1.218 18 H -0.208 1.208 19 C -0.178 4.178 20 C -0.006 4.006 21 C 0.408 3.592 22 F -0.152 7.152 23 F -0.160 7.160 24 F -0.153 7.153 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.522 4.628 3.913 20.441 hybrid contribution 1.185 0.386 0.389 1.305 sum -18.337 5.014 4.302 19.491 Atomic orbital electron populations 1.21709 0.88930 1.04910 1.04111 1.22736 1.01851 1.02808 0.91328 0.84772 1.19709 0.81212 0.84131 0.84648 1.90724 1.57318 1.26726 1.65245 1.48183 1.22729 1.37169 1.24716 1.22110 0.92954 0.89121 0.97956 1.22758 0.92334 1.02095 1.01905 1.20165 0.85469 0.94216 0.93287 1.42430 0.98998 1.08564 1.86393 1.19221 0.85950 0.90427 1.41667 0.91154 1.24751 0.97301 0.96086 1.02672 1.69665 1.18573 1.13683 1.56032 0.86209 0.82224 0.80246 0.77604 1.21717 1.21782 1.20752 1.22211 0.93303 0.99709 1.02625 1.21701 0.96231 0.98604 0.84070 1.20035 0.76032 0.78104 0.84988 1.93273 1.29011 1.96302 1.96661 1.93192 1.88516 1.80739 1.53539 1.93237 1.88318 1.37053 1.96683 0.90437 0.90013 0.90074 0.90889 0.90809 0.91704 0.90468 0.93357 0.78213 0.93458 0.91692 0.90329 0.89169 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.53 37.16 0.32 -0.83 16 2 C -0.16 -1.67 2.04 -91.77 -0.19 -1.85 16 3 H 0.13 1.01 6.16 -51.93 -0.32 0.69 16 4 C 0.52 6.92 6.18 -10.99 -0.07 6.85 16 5 O -0.52 -8.52 15.73 5.55 0.09 -8.43 16 6 N -0.60 -7.83 2.97 -172.50 -0.51 -8.34 16 7 C 0.10 1.23 5.63 -3.48 -0.02 1.21 16 8 C -0.15 -2.45 5.67 -26.39 -0.15 -2.60 16 9 C 0.18 3.31 2.73 -67.89 -0.19 3.13 16 10 N -0.72 -17.52 5.12 -53.39 -0.27 -17.79 16 11 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 12 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 13 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 14 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 15 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C -0.14 -2.24 5.55 -26.62 -0.15 -2.39 16 20 C 0.12 1.57 6.44 -3.71 -0.02 1.54 16 21 C 0.46 5.49 2.68 37.16 0.10 5.59 16 22 F -0.17 -2.34 15.17 2.25 0.03 -2.30 16 23 F -0.18 -1.93 16.89 2.25 0.04 -1.89 16 24 F -0.17 -2.35 16.37 2.25 0.04 -2.31 16 25 H 0.08 0.48 7.94 -51.93 -0.41 0.07 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.78 7.54 -51.93 -0.39 0.39 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.75 4.64 -51.93 -0.24 0.51 16 30 H 0.06 1.17 7.84 -51.93 -0.41 0.76 16 31 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 33 H 0.38 10.08 7.80 -40.82 -0.32 9.76 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.09 1.25 7.00 -51.93 -0.36 0.89 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 319.04 15.07 4.81 4.81 Total: -1.00 -31.32 319.04 -5.65 -36.97 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -4.95 Total: 5.87 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -0.61 Total: 3.61 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.06 Total: -53.22 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.09 Total: -8.43 kcal Atomic # 9 Polarization: -6.61 SS G_CDS: 0.11 Total: -6.50 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.32 -5.65 -36.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996890167.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.187 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds