Wall clock time and date at job start Tue Mar 31 2020 07:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46909 * 2 1 4 4 C 1.50697 * 109.47035 * 240.00337 * 2 1 3 5 5 O 1.21286 * 119.99775 * 325.06128 * 4 2 1 6 6 N 1.34773 * 120.00154 * 145.33787 * 4 2 1 7 7 C 1.46933 * 120.62828 * 4.67340 * 6 4 2 8 8 C 1.53623 * 108.53992 * 126.37157 * 7 6 4 9 9 C 1.53038 * 109.24254 * 54.85618 * 8 7 6 10 10 N 1.46504 * 109.45841 * 178.48525 * 9 8 7 11 11 C 1.36937 * 120.00248 * 275.06986 * 10 9 8 12 12 H 1.08000 * 120.00094 * 0.02562 * 11 10 9 13 13 C 1.38807 * 119.99925 * 179.97438 * 11 10 9 14 14 N 1.31627 * 120.00141 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00195 * 180.02562 * 13 11 10 16 16 H 1.48490 * 109.47327 * 89.99851 * 15 13 11 17 17 H 1.48504 * 109.47259 * 210.00461 * 15 13 11 18 18 H 1.48505 * 109.46680 * 329.99601 * 15 13 11 19 19 C 1.53034 * 109.53959 * 298.51020 * 9 8 7 20 20 C 1.46924 * 120.63231 * 184.95690 * 6 4 2 21 21 C 1.53001 * 109.47247 * 120.00224 * 2 1 3 22 22 F 1.39890 * 109.47090 * 180.02562 * 21 2 1 23 23 F 1.39897 * 109.47019 * 300.00406 * 21 2 1 24 24 F 1.39908 * 109.46761 * 59.99644 * 21 2 1 25 25 H 1.08998 * 109.47140 * 305.00049 * 1 2 3 26 26 H 1.09002 * 109.47147 * 64.99883 * 1 2 3 27 27 H 1.09004 * 109.47107 * 184.99722 * 1 2 3 28 28 H 1.09002 * 109.58623 * 246.20174 * 7 6 4 29 29 H 1.09000 * 109.58586 * 6.62617 * 7 6 4 30 30 H 1.08999 * 109.63662 * 294.86473 * 8 7 6 31 31 H 1.08999 * 109.42895 * 174.72380 * 8 7 6 32 32 H 1.09007 * 109.45077 * 58.52337 * 9 8 7 33 33 H 0.97001 * 119.99594 * 95.06743 * 10 9 8 34 34 H 0.96998 * 120.00200 * 179.97438 * 14 13 11 35 35 H 1.09002 * 109.49752 * 301.41172 * 19 9 8 36 36 H 1.09003 * 109.49857 * 181.31721 * 19 9 8 37 37 H 1.09003 * 109.58720 * 353.36882 * 20 6 4 38 38 H 1.09001 * 109.58930 * 113.65588 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 1.4226 -1.6606 -1.6734 6 7 3.1621 -0.2931 -1.8355 7 6 3.9697 0.7861 -1.2507 8 6 5.4158 0.2891 -1.1032 9 6 5.9193 -0.2076 -2.4603 10 7 7.3103 -0.6493 -2.3329 11 6 8.3294 0.2599 -2.4334 12 1 8.1076 1.3027 -2.6062 13 6 9.6473 -0.1585 -2.3121 14 7 9.9175 -1.4292 -2.1001 15 14 11.0374 1.0818 -2.4485 16 1 11.3476 1.6276 -1.1028 17 1 12.2433 0.4150 -3.0023 18 1 10.6264 2.1888 -3.3491 19 6 5.0534 -1.3787 -2.9301 20 6 3.6062 -0.9045 -3.0955 21 6 2.0401 -0.7213 1.2492 22 9 3.4390 -0.7208 1.2495 23 9 1.5737 -0.0619 2.3915 24 9 1.5736 -2.0403 1.2491 25 1 -0.3633 0.5894 0.8418 26 1 -0.3633 0.4343 -0.9314 27 1 -0.3633 -1.0238 0.0895 28 1 3.9448 1.6571 -1.9056 29 1 3.5711 1.0512 -0.2714 30 1 5.4508 -0.5269 -0.3814 31 1 6.0472 1.1079 -0.7584 32 1 5.8606 0.6021 -3.1878 33 1 7.5095 -1.5858 -2.1773 34 1 10.8385 -1.7216 -2.0157 35 1 5.0919 -2.1790 -2.1911 36 1 5.4270 -1.7471 -3.8856 37 1 2.9678 -1.7554 -3.3337 38 1 3.5499 -0.1693 -3.8982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996890167.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:21 Heat of formation + Delta-G solvation = -200.327445 kcal Electronic energy + Delta-G solvation = -25194.909881 eV Core-core repulsion = 21042.639846 eV Total energy + Delta-G solvation = -4152.270035 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.25521 -48.75042 -48.70648 -41.43660 -38.89379 -36.20213 -35.12139 -33.74873 -32.01670 -31.00436 -27.58731 -26.74196 -25.10497 -24.47243 -23.38931 -21.58975 -20.47491 -19.81600 -19.46379 -19.12682 -18.64220 -18.15290 -16.84984 -16.70030 -16.10742 -15.68367 -15.65259 -15.45324 -15.36466 -15.14046 -15.07424 -14.89579 -14.83718 -14.79674 -14.43723 -14.14016 -13.93848 -13.45231 -13.21074 -13.14972 -12.89914 -12.82866 -12.65461 -12.38242 -12.18529 -12.13764 -12.00709 -11.69413 -11.31211 -11.09893 -10.83716 -9.77981 -9.00042 -7.91956 -5.20930 0.98215 1.49388 1.50675 1.58886 1.73690 1.83790 2.57974 2.65444 2.82689 2.88437 3.38257 3.41811 3.71886 3.76871 3.83299 3.95358 4.05951 4.16749 4.33632 4.40377 4.59994 4.64989 4.71177 4.74131 4.81705 4.84695 4.99921 5.06241 5.13323 5.28086 5.47740 5.54162 5.60591 6.21398 6.29633 6.88069 7.35418 8.11409 8.33891 9.31939 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.025409 B = 0.004052 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.720611 B = 6908.183162 C = 7354.702275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.157 4.157 3 H 0.169 0.831 4 C 0.515 3.485 5 O -0.557 6.557 6 N -0.598 5.598 7 C 0.109 3.891 8 C -0.141 4.141 9 C 0.173 3.827 10 N -0.740 5.740 11 C -0.234 4.234 12 H 0.082 0.918 13 C -0.079 4.079 14 N -0.974 5.974 15 Si 0.971 3.029 16 H -0.289 1.289 17 H -0.301 1.301 18 H -0.265 1.265 19 C -0.130 4.130 20 C 0.123 3.877 21 C 0.459 3.541 22 F -0.185 7.185 23 F -0.170 7.170 24 F -0.187 7.187 25 H 0.102 0.898 26 H 0.093 0.907 27 H 0.062 0.938 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.369 0.631 34 H 0.249 0.751 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.011 7.635 4.123 22.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.179 4.179 3 H 0.186 0.814 4 C 0.301 3.699 5 O -0.435 6.435 6 N -0.329 5.329 7 C -0.013 4.013 8 C -0.182 4.182 9 C 0.065 3.935 10 N -0.379 5.379 11 C -0.366 4.366 12 H 0.100 0.900 13 C -0.271 4.271 14 N -0.625 5.625 15 Si 0.800 3.200 16 H -0.216 1.216 17 H -0.228 1.228 18 H -0.190 1.190 19 C -0.169 4.169 20 C 0.000 4.000 21 C 0.405 3.595 22 F -0.166 7.166 23 F -0.151 7.151 24 F -0.168 7.168 25 H 0.121 0.879 26 H 0.112 0.888 27 H 0.081 0.919 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.200 0.800 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.216 7.292 3.857 22.763 hybrid contribution 1.618 -0.453 0.421 1.733 sum -19.597 6.839 4.278 21.192 Atomic orbital electron populations 1.21767 0.87366 1.04424 1.05887 1.22834 1.03061 1.03573 0.88418 0.81395 1.20230 0.80831 0.83659 0.85163 1.90714 1.58314 1.28159 1.66332 1.48260 1.22847 1.37282 1.24542 1.22144 0.89762 0.89252 1.00166 1.22526 0.95324 1.00933 0.99435 1.20444 0.83130 0.95209 0.94759 1.42693 1.01088 1.07570 1.86500 1.19659 0.86611 0.91217 1.39072 0.89984 1.25558 0.99889 0.97710 1.03904 1.69836 1.18371 1.15726 1.58569 0.85169 0.78870 0.78337 0.77581 1.21632 1.22768 1.18992 1.22070 0.94945 0.98224 1.01632 1.21616 0.93796 0.99356 0.85206 1.20342 0.75412 0.77743 0.86053 1.93252 1.30244 1.96332 1.96786 1.93208 1.88302 1.80383 1.53221 1.93210 1.88414 1.38395 1.96810 0.87938 0.88778 0.91895 0.87896 0.88298 0.94040 0.91342 0.92528 0.80020 0.94257 0.93809 0.90678 0.89599 0.88528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.53 71.98 0.61 -1.24 16 2 C -0.16 -2.70 2.04 -11.54 -0.02 -2.73 16 3 H 0.17 1.71 6.16 -2.39 -0.01 1.69 16 4 C 0.51 12.65 6.18 87.66 0.54 13.19 16 5 O -0.56 -17.51 15.73 -3.05 -0.05 -17.55 16 6 N -0.60 -14.22 2.97 -818.05 -2.43 -16.65 16 7 C 0.11 2.28 5.63 86.51 0.49 2.77 16 8 C -0.14 -4.43 5.67 30.82 0.17 -4.25 16 9 C 0.17 6.25 2.73 45.01 0.12 6.38 16 10 N -0.74 -36.17 5.12 -322.82 -1.65 -37.82 16 11 C -0.23 -12.47 9.93 84.03 0.83 -11.64 16 12 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 13 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 14 N -0.97 -59.66 13.06 21.65 0.28 -59.38 16 15 Si 0.97 45.23 29.55 68.60 2.03 47.26 16 16 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 17 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 19 C -0.13 -4.13 5.55 30.67 0.17 -3.96 16 20 C 0.12 3.08 6.44 86.36 0.56 3.64 16 21 C 0.46 10.05 2.68 71.98 0.19 10.24 16 22 F -0.18 -4.81 15.17 44.97 0.68 -4.12 16 23 F -0.17 -3.25 16.89 44.97 0.76 -2.49 16 24 F -0.19 -5.01 16.37 44.97 0.74 -4.27 16 25 H 0.10 0.88 7.94 -2.39 -0.02 0.87 16 26 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 1.11 7.54 -2.39 -0.02 1.09 16 28 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.10 1.62 4.64 -2.39 -0.01 1.60 16 30 H 0.04 1.49 7.84 -2.39 -0.02 1.47 16 31 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 32 H 0.06 1.97 8.08 -2.38 -0.02 1.96 16 33 H 0.37 20.01 7.80 -92.71 -0.72 19.28 16 34 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 35 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.09 2.29 7.00 -2.39 -0.02 2.27 16 38 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -69.23 319.04 4.87 -64.36 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.37 Total: 22.25 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 4.14 Total: 8.42 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -3.80 Total: -113.84 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.05 Total: -17.55 kcal Atomic # 9 Polarization: -13.07 SS G_CDS: 2.18 Total: -10.89 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -69.23 4.87 -64.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996890167.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.969 kcal (2) G-P(sol) polarization free energy of solvation -69.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds