Wall clock time and date at job start Tue Mar 31 2020 07:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47201 * 2 1 4 4 C 1.50699 * 109.47445 * 120.00592 * 2 1 3 5 5 O 1.21282 * 120.00261 * 34.94180 * 4 2 1 6 6 N 1.34780 * 119.99875 * 214.95012 * 4 2 1 7 7 C 1.46923 * 120.63010 * 354.79081 * 6 4 2 8 8 C 1.53197 * 108.77366 * 233.58690 * 7 6 4 9 9 C 1.53040 * 109.31169 * 305.36266 * 8 7 6 10 10 C 1.53359 * 109.60382 * 61.37650 * 9 8 7 11 11 H 1.08999 * 109.47654 * 58.55044 * 10 9 8 12 12 N 1.46499 * 109.68121 * 178.74484 * 10 9 8 13 13 C 1.36938 * 120.00128 * 274.75121 * 12 10 9 14 14 H 1.07997 * 119.99887 * 0.02562 * 13 12 10 15 15 C 1.38814 * 120.00177 * 180.02562 * 13 12 10 16 16 N 1.31623 * 119.99817 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00071 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47047 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46903 * 120.00178 * 17 15 13 20 20 H 1.48494 * 109.47281 * 239.99847 * 17 15 13 21 21 C 1.46924 * 120.62792 * 174.76522 * 6 4 2 22 22 C 1.53005 * 109.46866 * 240.00029 * 2 1 3 23 23 F 1.39897 * 109.47580 * 300.00100 * 22 2 1 24 24 F 1.39906 * 109.46752 * 60.00276 * 22 2 1 25 25 F 1.39899 * 109.47213 * 179.97438 * 22 2 1 26 26 H 1.09004 * 109.47099 * 184.97459 * 1 2 3 27 27 H 1.09004 * 109.46579 * 304.96765 * 1 2 3 28 28 H 1.08998 * 109.47301 * 64.97079 * 1 2 3 29 29 H 1.09002 * 109.58488 * 353.37588 * 7 6 4 30 30 H 1.08997 * 109.58641 * 113.79826 * 7 6 4 31 31 H 1.09001 * 109.49444 * 65.31634 * 8 7 6 32 32 H 1.09001 * 109.49220 * 185.38088 * 8 7 6 33 33 H 1.08993 * 109.45877 * 181.38436 * 9 8 7 34 34 H 1.09000 * 109.46202 * 301.35973 * 9 8 7 35 35 H 0.97003 * 120.00093 * 94.75227 * 12 10 9 36 36 H 0.96995 * 119.99781 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.58857 * 246.20141 * 21 6 4 38 38 H 1.08999 * 109.58996 * 6.48486 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 1.4229 -1.6609 1.6732 6 7 3.1591 -0.2897 1.8387 7 6 3.9697 0.7859 1.2517 8 6 5.4144 0.2952 1.1136 9 6 5.9138 -0.1975 2.4738 10 6 5.0477 -1.3720 2.9453 11 1 5.0903 -2.1738 2.2081 12 7 5.5428 -1.8643 4.2332 13 6 6.5604 -2.7798 4.2709 14 1 6.9983 -3.1387 3.3512 15 6 7.0292 -3.2467 5.4912 16 7 6.4952 -2.8097 6.6121 17 14 8.4169 -4.4961 5.5426 18 1 8.8395 -4.8237 4.1573 19 1 9.5676 -3.9273 6.2894 20 1 7.9471 -5.7300 6.2222 21 6 3.5996 -0.8975 3.1017 22 6 2.0400 -0.7213 -1.2493 23 9 1.5736 -2.0402 -1.2494 24 9 1.5736 -0.0616 -2.3916 25 9 3.4390 -0.7208 -1.2497 26 1 -0.3633 -1.0238 0.0891 27 1 -0.3633 0.5890 0.8422 28 1 -0.3634 0.4348 -0.9311 29 1 3.5763 1.0452 0.2688 30 1 3.9415 1.6608 1.9012 31 1 5.4536 -0.5223 0.3937 32 1 6.0454 1.1144 0.7688 33 1 6.9496 -0.5243 2.3836 34 1 5.8507 0.6136 3.1993 35 1 5.1498 -1.5417 5.0593 36 1 6.8225 -3.1362 7.4648 37 1 3.5411 -0.1599 3.9021 38 1 2.9604 -1.7474 3.3408 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999894802.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:30 Heat of formation + Delta-G solvation = -179.673162 kcal Electronic energy + Delta-G solvation = -25218.859757 eV Core-core repulsion = 21067.485359 eV Total energy + Delta-G solvation = -4151.374398 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.34736 -47.85842 -47.75624 -40.31016 -37.55983 -34.70177 -33.98722 -32.21790 -31.27621 -28.50492 -26.76365 -25.51439 -24.17250 -22.85481 -22.13048 -20.19250 -19.36351 -18.86480 -18.54007 -17.68304 -17.23386 -17.13469 -15.65539 -15.21011 -14.70615 -14.68510 -14.51626 -14.24977 -14.20321 -14.02638 -13.89532 -13.85529 -13.60000 -13.39651 -13.35182 -13.04681 -12.95312 -12.55537 -12.23004 -12.10980 -11.64050 -11.08507 -10.98387 -10.92793 -10.69210 -10.46238 -10.40088 -10.10032 -9.92204 -9.69707 -8.94166 -8.55564 -7.01715 -5.80073 -3.09810 1.99404 2.72834 2.80623 3.42350 3.48492 3.50387 3.52065 3.70080 3.77590 4.30073 4.51905 4.54077 4.57981 4.86825 5.08839 5.21174 5.24449 5.35511 5.44623 5.50267 5.60880 5.70620 5.74542 5.78573 6.00150 6.07959 6.16814 6.36189 6.48677 6.57840 6.82734 6.99914 7.33188 7.68584 7.99645 8.37822 9.49353 10.03584 10.38748 11.42473 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.026353 B = 0.003973 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.247049 B = 7045.422453 C = 7113.718648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.163 4.163 3 H 0.133 0.867 4 C 0.515 3.485 5 O -0.515 6.515 6 N -0.595 5.595 7 C 0.103 3.897 8 C -0.132 4.132 9 C -0.138 4.138 10 C 0.168 3.832 11 H 0.051 0.949 12 N -0.720 5.720 13 C -0.239 4.239 14 H 0.071 0.929 15 C -0.011 4.011 16 N -0.932 5.932 17 Si 0.907 3.093 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.105 3.895 22 C 0.464 3.536 23 F -0.169 7.169 24 F -0.179 7.179 25 F -0.175 7.175 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.069 0.931 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.227 11.513 -16.092 22.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.186 4.186 3 H 0.151 0.849 4 C 0.300 3.700 5 O -0.390 6.390 6 N -0.328 5.328 7 C -0.020 4.020 8 C -0.171 4.171 9 C -0.178 4.178 10 C 0.057 3.943 11 H 0.069 0.931 12 N -0.361 5.361 13 C -0.370 4.370 14 H 0.089 0.911 15 C -0.207 4.207 16 N -0.580 5.580 17 Si 0.738 3.262 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 C -0.017 4.017 22 C 0.409 3.591 23 F -0.151 7.151 24 F -0.160 7.160 25 F -0.157 7.157 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.400 10.827 -15.879 21.852 hybrid contribution 0.940 -0.492 0.126 1.068 sum -9.460 10.335 -15.753 21.082 Atomic orbital electron populations 1.21745 0.88888 1.05415 1.03915 1.22740 1.01980 1.02591 0.91307 0.84900 1.19697 0.81364 0.84271 0.84670 1.90758 1.56898 1.26450 1.64914 1.48109 1.22941 1.37062 1.24656 1.21902 0.92272 0.89688 0.98105 1.21917 0.94280 1.01281 0.99636 1.22344 1.01438 0.99720 0.94344 1.20527 0.89441 0.93991 0.90327 0.93051 1.42299 1.41776 1.50467 1.01579 1.19257 1.09365 1.15859 0.92537 0.91061 1.24744 1.00109 1.00570 0.95312 1.69669 1.44469 1.47114 0.96726 0.86116 0.81718 0.81005 0.77347 1.20523 1.21842 1.21796 1.22096 0.97652 0.98784 0.83154 1.20057 0.75792 0.78242 0.85009 1.93250 1.88269 1.36895 1.96668 1.93191 1.88495 1.80757 1.53586 1.93233 1.29384 1.96351 1.96695 0.89732 0.89967 0.90477 0.90640 0.90838 0.91466 0.91101 0.91407 0.92407 0.78181 0.93491 0.91239 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.70 37.16 0.32 -0.89 16 2 C -0.16 -1.64 2.04 -91.77 -0.19 -1.83 16 3 H 0.13 0.92 6.17 -51.93 -0.32 0.60 16 4 C 0.52 7.35 6.18 -10.98 -0.07 7.28 16 5 O -0.52 -9.30 15.53 5.56 0.09 -9.22 16 6 N -0.59 -8.36 2.97 -172.77 -0.51 -8.87 16 7 C 0.10 1.12 5.61 -3.71 -0.02 1.10 16 8 C -0.13 -1.66 6.08 -26.61 -0.16 -1.82 16 9 C -0.14 -2.29 5.49 -26.53 -0.15 -2.43 16 10 C 0.17 3.30 2.94 -67.65 -0.20 3.10 16 11 H 0.05 1.10 8.08 -51.93 -0.42 0.68 16 12 N -0.72 -17.76 5.13 -53.15 -0.27 -18.03 16 13 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 14 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 15 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 16 N -0.93 -27.89 13.06 55.49 0.72 -27.16 16 17 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 C 0.11 1.81 5.90 -3.71 -0.02 1.79 16 22 C 0.46 5.22 2.68 37.16 0.10 5.32 16 23 F -0.17 -2.31 16.55 2.25 0.04 -2.27 16 24 F -0.18 -1.78 16.71 2.25 0.04 -1.74 16 25 F -0.18 -2.12 15.20 2.25 0.03 -2.08 16 26 H 0.08 0.88 7.48 -51.93 -0.39 0.49 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.50 7.66 -51.93 -0.40 0.10 16 29 H 0.08 0.64 4.63 -51.93 -0.24 0.40 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.91 7.88 -51.93 -0.41 0.50 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.38 9.99 7.80 -40.82 -0.32 9.67 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.09 1.84 7.00 -51.93 -0.36 1.48 16 LS Contribution 318.79 15.07 4.80 4.80 Total: -1.00 -31.73 318.79 -5.65 -37.38 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -4.94 Total: 5.39 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -0.63 Total: 4.46 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.06 Total: -54.06 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 0.11 Total: -6.09 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.73 -5.65 -37.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999894802.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.289 kcal (2) G-P(sol) polarization free energy of solvation -31.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds