Wall clock time and date at job start Tue Mar 31 2020 07:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47201 * 2 1 4 4 C 1.50699 * 109.47445 * 120.00592 * 2 1 3 5 5 O 1.21282 * 120.00261 * 34.94180 * 4 2 1 6 6 N 1.34780 * 119.99875 * 214.95012 * 4 2 1 7 7 C 1.46923 * 120.63010 * 354.79081 * 6 4 2 8 8 C 1.53197 * 108.77366 * 233.58690 * 7 6 4 9 9 C 1.53040 * 109.31169 * 305.36266 * 8 7 6 10 10 C 1.53359 * 109.60382 * 61.37650 * 9 8 7 11 11 H 1.08999 * 109.47654 * 58.55044 * 10 9 8 12 12 N 1.46499 * 109.68121 * 178.74484 * 10 9 8 13 13 C 1.36938 * 120.00128 * 274.75121 * 12 10 9 14 14 H 1.07997 * 119.99887 * 0.02562 * 13 12 10 15 15 C 1.38814 * 120.00177 * 180.02562 * 13 12 10 16 16 N 1.31623 * 119.99817 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00071 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47047 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46903 * 120.00178 * 17 15 13 20 20 H 1.48494 * 109.47281 * 239.99847 * 17 15 13 21 21 C 1.46924 * 120.62792 * 174.76522 * 6 4 2 22 22 C 1.53005 * 109.46866 * 240.00029 * 2 1 3 23 23 F 1.39897 * 109.47580 * 300.00100 * 22 2 1 24 24 F 1.39906 * 109.46752 * 60.00276 * 22 2 1 25 25 F 1.39899 * 109.47213 * 179.97438 * 22 2 1 26 26 H 1.09004 * 109.47099 * 184.97459 * 1 2 3 27 27 H 1.09004 * 109.46579 * 304.96765 * 1 2 3 28 28 H 1.08998 * 109.47301 * 64.97079 * 1 2 3 29 29 H 1.09002 * 109.58488 * 353.37588 * 7 6 4 30 30 H 1.08997 * 109.58641 * 113.79826 * 7 6 4 31 31 H 1.09001 * 109.49444 * 65.31634 * 8 7 6 32 32 H 1.09001 * 109.49220 * 185.38088 * 8 7 6 33 33 H 1.08993 * 109.45877 * 181.38436 * 9 8 7 34 34 H 1.09000 * 109.46202 * 301.35973 * 9 8 7 35 35 H 0.97003 * 120.00093 * 94.75227 * 12 10 9 36 36 H 0.96995 * 119.99781 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.58857 * 246.20141 * 21 6 4 38 38 H 1.08999 * 109.58996 * 6.48486 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 1.4229 -1.6609 1.6732 6 7 3.1591 -0.2897 1.8387 7 6 3.9697 0.7859 1.2517 8 6 5.4144 0.2952 1.1136 9 6 5.9138 -0.1975 2.4738 10 6 5.0477 -1.3720 2.9453 11 1 5.0903 -2.1738 2.2081 12 7 5.5428 -1.8643 4.2332 13 6 6.5604 -2.7798 4.2709 14 1 6.9983 -3.1387 3.3512 15 6 7.0292 -3.2467 5.4912 16 7 6.4952 -2.8097 6.6121 17 14 8.4169 -4.4961 5.5426 18 1 8.8395 -4.8237 4.1573 19 1 9.5676 -3.9273 6.2894 20 1 7.9471 -5.7300 6.2222 21 6 3.5996 -0.8975 3.1017 22 6 2.0400 -0.7213 -1.2493 23 9 1.5736 -2.0402 -1.2494 24 9 1.5736 -0.0616 -2.3916 25 9 3.4390 -0.7208 -1.2497 26 1 -0.3633 -1.0238 0.0891 27 1 -0.3633 0.5890 0.8422 28 1 -0.3634 0.4348 -0.9311 29 1 3.5763 1.0452 0.2688 30 1 3.9415 1.6608 1.9012 31 1 5.4536 -0.5223 0.3937 32 1 6.0454 1.1144 0.7688 33 1 6.9496 -0.5243 2.3836 34 1 5.8507 0.6136 3.1993 35 1 5.1498 -1.5417 5.0593 36 1 6.8225 -3.1362 7.4648 37 1 3.5411 -0.1599 3.9021 38 1 2.9604 -1.7474 3.3408 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999894802.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:30 Heat of formation + Delta-G solvation = -200.678465 kcal Electronic energy + Delta-G solvation = -25219.770615 eV Core-core repulsion = 21067.485359 eV Total energy + Delta-G solvation = -4152.285256 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.24255 -48.73108 -48.69331 -41.46801 -38.88693 -36.29826 -35.05007 -33.73736 -32.80972 -30.18128 -27.59568 -26.66107 -25.97096 -24.01704 -23.44698 -21.51755 -20.50590 -19.79769 -19.46401 -19.23001 -18.65378 -18.15250 -16.85030 -16.78903 -16.08373 -15.72092 -15.66785 -15.44665 -15.29436 -15.20550 -15.10699 -14.82762 -14.81639 -14.76075 -14.49490 -14.21681 -14.09518 -13.67876 -13.35530 -12.95863 -12.91709 -12.88680 -12.49757 -12.31783 -12.17358 -12.06919 -11.85994 -11.74906 -11.66364 -11.04893 -10.93685 -9.78902 -9.04864 -7.97719 -5.27003 0.98009 1.45276 1.46530 1.56005 1.66671 1.83056 2.54049 2.65329 2.82185 2.89163 3.35110 3.40374 3.69974 3.73249 3.87825 4.00421 4.05712 4.12005 4.23813 4.34353 4.56223 4.65379 4.69208 4.71429 4.80088 4.83783 5.03644 5.13195 5.14597 5.35496 5.39463 5.48116 5.57093 6.22194 6.24682 6.88290 7.30758 8.02798 8.27566 9.25676 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.026353 B = 0.003973 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.247049 B = 7045.422453 C = 7113.718648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.152 4.152 3 H 0.176 0.824 4 C 0.509 3.491 5 O -0.562 6.562 6 N -0.594 5.594 7 C 0.098 3.902 8 C -0.125 4.125 9 C -0.128 4.128 10 C 0.165 3.835 11 H 0.026 0.974 12 N -0.734 5.734 13 C -0.240 4.240 14 H 0.071 0.929 15 C -0.071 4.071 16 N -0.967 5.967 17 Si 0.970 3.030 18 H -0.269 1.269 19 H -0.289 1.289 20 H -0.294 1.294 21 C 0.118 3.882 22 C 0.462 3.538 23 F -0.189 7.189 24 F -0.167 7.167 25 F -0.181 7.181 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.055 0.945 32 H 0.105 0.895 33 H 0.044 0.956 34 H 0.063 0.937 35 H 0.375 0.625 36 H 0.252 0.748 37 H 0.080 0.920 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.275 13.792 -18.073 24.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 H 0.193 0.807 4 C 0.296 3.704 5 O -0.440 6.440 6 N -0.326 5.326 7 C -0.022 4.022 8 C -0.164 4.164 9 C -0.168 4.168 10 C 0.056 3.944 11 H 0.044 0.956 12 N -0.374 5.374 13 C -0.372 4.372 14 H 0.089 0.911 15 C -0.263 4.263 16 N -0.617 5.617 17 Si 0.800 3.200 18 H -0.193 1.193 19 H -0.216 1.216 20 H -0.222 1.222 21 C -0.005 4.005 22 C 0.407 3.593 23 F -0.170 7.170 24 F -0.148 7.148 25 F -0.162 7.162 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.122 0.878 29 H 0.128 0.872 30 H 0.119 0.881 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.207 0.793 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.443 13.146 -17.934 24.567 hybrid contribution 0.919 -1.190 0.663 1.643 sum -9.524 11.956 -17.271 23.064 Atomic orbital electron populations 1.21804 0.87691 1.04437 1.05952 1.22812 1.02880 1.03655 0.88048 0.80691 1.20443 0.80774 0.83704 0.85461 1.90742 1.58252 1.28598 1.66456 1.48182 1.23386 1.37487 1.23579 1.22233 0.90514 0.89121 1.00370 1.21881 0.96068 1.02050 0.96364 1.22125 0.99348 0.98182 0.97121 1.20687 0.91663 0.94462 0.87588 0.95591 1.42451 1.41440 1.50482 1.03034 1.19556 1.09475 1.15680 0.92466 0.91138 1.25509 1.02822 1.02887 0.95088 1.69809 1.46134 1.48752 0.97022 0.85119 0.78874 0.78416 0.77631 1.19335 1.21624 1.22162 1.21655 0.95188 0.98299 0.85399 1.20236 0.75537 0.77628 0.85863 1.93218 1.88483 1.38544 1.96802 1.93216 1.88305 1.80307 1.52986 1.93225 1.29868 1.96323 1.96776 0.92201 0.88638 0.87773 0.87238 0.88081 0.92602 0.87619 0.93677 0.91846 0.79286 0.93916 0.90139 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.70 71.98 0.63 -1.42 16 2 C -0.15 -2.58 2.04 -11.54 -0.02 -2.61 16 3 H 0.18 1.45 6.17 -2.39 -0.01 1.43 16 4 C 0.51 13.87 6.18 87.66 0.54 14.41 16 5 O -0.56 -20.68 15.53 -3.04 -0.05 -20.73 16 6 N -0.59 -15.69 2.97 -818.90 -2.43 -18.13 16 7 C 0.10 1.74 5.61 86.36 0.48 2.22 16 8 C -0.13 -2.76 6.08 30.67 0.19 -2.57 16 9 C -0.13 -4.11 5.49 30.73 0.17 -3.94 16 10 C 0.17 6.61 2.94 45.18 0.13 6.74 16 11 H 0.03 1.16 8.08 -2.39 -0.02 1.14 16 12 N -0.73 -37.25 5.13 -322.06 -1.65 -38.91 16 13 C -0.24 -13.51 9.93 84.03 0.83 -12.67 16 14 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 15 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 16 N -0.97 -59.22 13.06 21.65 0.28 -58.93 16 17 Si 0.97 46.66 29.55 68.60 2.03 48.68 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 20 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 21 C 0.12 4.09 5.90 86.36 0.51 4.60 16 22 C 0.46 9.27 2.68 71.98 0.19 9.46 16 23 F -0.19 -5.03 16.55 44.97 0.74 -4.29 16 24 F -0.17 -2.77 16.71 44.97 0.75 -2.01 16 25 F -0.18 -3.90 15.20 44.97 0.68 -3.21 16 26 H 0.06 1.19 7.48 -2.38 -0.02 1.17 16 27 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.10 0.95 7.66 -2.39 -0.02 0.94 16 29 H 0.11 1.24 4.63 -2.39 -0.01 1.23 16 30 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.39 7.88 -2.39 -0.02 1.37 16 32 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.37 20.17 7.80 -92.71 -0.72 19.45 16 36 H 0.25 14.93 8.31 -92.71 -0.77 14.15 16 37 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.06 2.60 7.00 -2.39 -0.02 2.58 16 Total: -1.00 -72.20 318.79 4.85 -67.36 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.37 Total: 19.54 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 4.12 Total: 10.63 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -3.81 Total: -115.97 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.05 Total: -20.73 kcal Atomic # 9 Polarization: -11.70 SS G_CDS: 2.18 Total: -9.52 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.68 kcal Total: -72.20 4.85 -67.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999894802.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.321 kcal (2) G-P(sol) polarization free energy of solvation -72.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds