Wall clock time and date at job start Tue Mar 31 2020 07:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46768 * 2 1 4 4 C 1.50704 * 109.47189 * 240.00500 * 2 1 3 5 5 O 1.21283 * 119.99704 * 263.40270 * 4 2 1 6 6 N 1.34779 * 120.00437 * 83.40515 * 4 2 1 7 7 C 1.46926 * 120.62663 * 4.77165 * 6 4 2 8 8 C 1.52766 * 109.00502 * 233.58460 * 7 6 4 9 9 C 1.53039 * 109.38283 * 305.58930 * 8 7 6 10 10 C 1.53038 * 109.53657 * 61.24200 * 9 8 7 11 11 H 1.08993 * 109.50012 * 58.58792 * 10 9 8 12 12 N 1.46502 * 109.52100 * 178.66908 * 10 9 8 13 13 C 1.36942 * 119.99718 * 274.85403 * 12 10 9 14 14 H 1.07993 * 120.00069 * 359.97438 * 13 12 10 15 15 C 1.38815 * 119.99673 * 180.02562 * 13 12 10 16 16 N 1.31623 * 119.99914 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00333 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46911 * 90.00271 * 17 15 13 19 19 H 1.48496 * 109.47244 * 210.00399 * 17 15 13 20 20 H 1.48499 * 109.47175 * 330.00829 * 17 15 13 21 21 C 1.46921 * 120.63286 * 185.05154 * 6 4 2 22 22 C 1.52991 * 109.47600 * 120.00130 * 2 1 3 23 23 F 1.39899 * 109.47391 * 59.99847 * 22 2 1 24 24 F 1.39903 * 109.47605 * 180.02562 * 22 2 1 25 25 F 1.39907 * 109.47011 * 300.00099 * 22 2 1 26 26 H 1.08996 * 109.46683 * 175.26127 * 1 2 3 27 27 H 1.08995 * 109.47419 * 55.25856 * 1 2 3 28 28 H 1.09000 * 109.47091 * 295.25457 * 1 2 3 29 29 H 1.09002 * 109.58868 * 353.41582 * 7 6 4 30 30 H 1.08998 * 109.59046 * 113.84492 * 7 6 4 31 31 H 1.09003 * 109.56140 * 185.55525 * 8 7 6 32 32 H 1.09000 * 109.38684 * 65.51751 * 8 7 6 33 33 H 1.09005 * 109.45788 * 301.21726 * 9 8 7 34 34 H 1.09002 * 109.44699 * 181.25545 * 9 8 7 35 35 H 0.97001 * 120.00193 * 94.85082 * 12 10 9 36 36 H 0.96994 * 119.99736 * 179.97438 * 16 15 13 37 37 H 1.08994 * 109.58630 * 246.15931 * 21 6 4 38 38 H 1.09007 * 109.58648 * 6.43857 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.3483 -1.8797 -1.1692 6 7 2.1307 -0.0462 -2.3992 7 6 1.8518 1.3948 -2.4670 8 6 0.8084 1.6490 -3.5535 9 6 1.2891 1.0387 -4.8720 10 6 1.4565 -0.4733 -4.7051 11 1 0.5062 -0.9135 -4.4032 12 7 1.8861 -1.0615 -5.9762 13 6 0.9559 -1.4047 -6.9209 14 1 -0.0943 -1.2420 -6.7286 15 6 1.3629 -1.9625 -8.1251 16 7 0.4689 -2.2919 -9.0332 17 14 3.1793 -2.2445 -8.4573 18 1 3.5644 -3.5988 -7.9851 19 1 3.4385 -2.1364 -9.9155 20 1 3.9791 -1.2227 -7.7352 21 6 2.5127 -0.7505 -3.6307 22 6 2.0401 -0.7212 1.2491 23 9 1.5738 -2.0402 1.2492 24 9 3.4391 -0.7207 1.2494 25 9 1.5738 -0.0617 2.3915 26 1 -0.3632 -1.0241 -0.0849 27 1 -0.3634 0.5856 -0.8444 28 1 -0.3633 0.4384 0.9294 29 1 1.4681 1.7384 -1.5063 30 1 2.7677 1.9332 -2.7107 31 1 0.6670 2.7225 -3.6796 32 1 -0.1361 1.1893 -3.2627 33 1 2.2455 1.4816 -5.1498 34 1 0.5557 1.2388 -5.6532 35 1 2.8293 -1.2079 -6.1487 36 1 0.7533 -2.6813 -9.8748 37 1 3.4836 -0.3907 -3.9712 38 1 2.5675 -1.8218 -3.4370 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999894804.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:36 Heat of formation + Delta-G solvation = -176.581499 kcal Electronic energy + Delta-G solvation = -24959.909852 eV Core-core repulsion = 20808.669519 eV Total energy + Delta-G solvation = -4151.240333 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.25121 -47.79101 -47.62704 -40.44903 -37.67040 -34.99646 -34.07659 -32.27979 -31.48662 -28.99555 -26.77929 -25.68766 -24.12343 -22.83800 -22.08706 -20.40337 -19.37399 -18.83858 -18.51815 -17.75448 -17.47594 -17.12631 -15.60409 -15.40100 -14.84643 -14.70112 -14.55986 -14.31373 -14.17923 -14.12168 -13.85441 -13.79672 -13.74616 -13.57108 -13.38345 -13.02712 -12.86186 -12.63651 -12.45699 -12.23836 -11.77503 -11.39155 -11.19804 -11.06316 -10.78130 -10.62096 -10.54091 -10.15343 -9.93901 -9.64896 -9.00045 -8.67425 -7.36212 -5.82714 -3.20001 2.21461 2.40742 2.83317 3.34259 3.37838 3.43057 3.47074 3.75748 3.79793 4.28410 4.48986 4.54325 4.58148 4.71494 4.94800 5.08479 5.13542 5.21814 5.26352 5.34301 5.40050 5.57269 5.59721 5.65649 5.79171 5.92140 5.98892 6.19669 6.32042 6.40610 6.68451 6.84793 7.21891 7.88722 7.93664 8.35429 9.12593 9.85023 10.03183 11.35230 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.027178 B = 0.003915 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.999299 B = 7150.822075 C = 7514.354950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.164 4.164 3 H 0.134 0.866 4 C 0.521 3.479 5 O -0.519 6.519 6 N -0.596 5.596 7 C 0.101 3.899 8 C -0.134 4.134 9 C -0.139 4.139 10 C 0.173 3.827 11 H 0.060 0.940 12 N -0.745 5.745 13 C -0.246 4.246 14 H 0.091 0.909 15 C 0.008 3.992 16 N -0.932 5.932 17 Si 0.884 3.116 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.277 1.277 21 C 0.103 3.897 22 C 0.471 3.529 23 F -0.165 7.165 24 F -0.179 7.179 25 F -0.182 7.182 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.362 0.638 36 H 0.260 0.740 37 H 0.067 0.933 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.883 10.840 20.677 23.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.186 4.186 3 H 0.152 0.848 4 C 0.306 3.694 5 O -0.395 6.395 6 N -0.329 5.329 7 C -0.022 4.022 8 C -0.173 4.173 9 C -0.179 4.179 10 C 0.062 3.938 11 H 0.078 0.922 12 N -0.387 5.387 13 C -0.376 4.376 14 H 0.109 0.891 15 C -0.188 4.188 16 N -0.579 5.579 17 Si 0.714 3.286 18 H -0.209 1.209 19 H -0.217 1.217 20 H -0.203 1.203 21 C -0.019 4.019 22 C 0.416 3.584 23 F -0.146 7.146 24 F -0.161 7.161 25 F -0.164 7.164 26 H 0.098 0.902 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.195 0.805 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.857 10.114 20.573 23.000 hybrid contribution 1.371 -0.125 -0.269 1.403 sum 3.229 9.989 20.304 22.857 Atomic orbital electron populations 1.21826 0.88777 1.05230 1.04775 1.22677 1.01820 1.02675 0.91465 0.84823 1.19683 0.78683 0.87018 0.84001 1.90819 1.48505 1.15726 1.84436 1.47961 1.67568 1.09459 1.07940 1.21856 0.99845 0.80354 1.00127 1.21871 0.98318 1.01166 0.95903 1.22264 1.01624 0.98203 0.95820 1.20448 0.95979 0.91818 0.85509 0.92199 1.42665 1.05624 1.75474 1.14954 1.19015 0.90177 1.34293 0.94122 0.89142 1.24664 0.97009 1.00671 0.96467 1.69696 1.32118 1.48117 1.07941 0.86567 0.86473 0.78254 0.77313 1.20919 1.21672 1.20319 1.22092 0.98344 0.98713 0.82762 1.19842 0.75691 0.78277 0.84583 1.93243 1.88133 1.36654 1.96590 1.93205 1.29697 1.96436 1.96715 1.93178 1.88543 1.80911 1.53760 0.90217 0.89436 0.89931 0.90147 0.90805 0.90862 0.91516 0.92454 0.90876 0.80534 0.92948 0.91478 0.88592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.83 37.16 0.33 -0.81 16 2 C -0.16 -1.56 1.86 -91.77 -0.17 -1.73 16 3 H 0.13 0.84 6.36 -51.93 -0.33 0.51 16 4 C 0.52 7.04 6.56 -10.98 -0.07 6.97 16 5 O -0.52 -9.22 14.58 5.55 0.08 -9.14 16 6 N -0.60 -7.59 2.98 -173.03 -0.52 -8.11 16 7 C 0.10 0.92 6.13 -3.93 -0.02 0.89 16 8 C -0.13 -1.39 6.06 -26.83 -0.16 -1.55 16 9 C -0.14 -2.08 5.47 -26.69 -0.15 -2.23 16 10 C 0.17 3.11 2.92 -67.81 -0.20 2.91 16 11 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 12 N -0.74 -16.88 4.93 -53.31 -0.26 -17.14 16 13 C -0.25 -6.73 10.41 -15.06 -0.16 -6.89 16 14 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 15 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 16 N -0.93 -28.79 13.97 55.49 0.78 -28.01 16 17 Si 0.88 21.73 27.74 -169.99 -4.71 17.02 16 18 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 21 C 0.10 1.63 5.89 -3.71 -0.02 1.61 16 22 C 0.47 5.35 2.47 37.15 0.09 5.45 16 23 F -0.16 -2.27 15.54 2.25 0.03 -2.24 16 24 F -0.18 -2.29 16.94 2.25 0.04 -2.25 16 25 F -0.18 -1.81 16.72 2.25 0.04 -1.78 16 26 H 0.08 0.74 7.94 -51.93 -0.41 0.32 16 27 H 0.09 0.57 7.66 -51.93 -0.40 0.17 16 28 H 0.08 0.48 7.67 -51.93 -0.40 0.08 16 29 H 0.08 0.49 5.07 -51.93 -0.26 0.22 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.36 8.09 5.66 -40.82 -0.23 7.86 16 36 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.10 1.72 7.04 -51.92 -0.37 1.35 16 LS Contribution 316.92 15.07 4.78 4.78 Total: -1.00 -32.88 316.92 -5.32 -38.20 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -4.95 Total: 3.93 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -0.63 Total: 4.75 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.00 Total: -53.26 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.08 Total: -9.14 kcal Atomic # 9 Polarization: -6.38 SS G_CDS: 0.11 Total: -6.27 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.02 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.88 -5.32 -38.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999894804.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.382 kcal (2) G-P(sol) polarization free energy of solvation -32.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds