Wall clock time and date at job start Tue Mar 31 2020 07:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46768 * 2 1 4 4 C 1.50704 * 109.47189 * 240.00500 * 2 1 3 5 5 O 1.21283 * 119.99704 * 263.40270 * 4 2 1 6 6 N 1.34779 * 120.00437 * 83.40515 * 4 2 1 7 7 C 1.46926 * 120.62663 * 4.77165 * 6 4 2 8 8 C 1.52766 * 109.00502 * 233.58460 * 7 6 4 9 9 C 1.53039 * 109.38283 * 305.58930 * 8 7 6 10 10 C 1.53038 * 109.53657 * 61.24200 * 9 8 7 11 11 H 1.08993 * 109.50012 * 58.58792 * 10 9 8 12 12 N 1.46502 * 109.52100 * 178.66908 * 10 9 8 13 13 C 1.36942 * 119.99718 * 274.85403 * 12 10 9 14 14 H 1.07993 * 120.00069 * 359.97438 * 13 12 10 15 15 C 1.38815 * 119.99673 * 180.02562 * 13 12 10 16 16 N 1.31623 * 119.99914 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00333 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46911 * 90.00271 * 17 15 13 19 19 H 1.48496 * 109.47244 * 210.00399 * 17 15 13 20 20 H 1.48499 * 109.47175 * 330.00829 * 17 15 13 21 21 C 1.46921 * 120.63286 * 185.05154 * 6 4 2 22 22 C 1.52991 * 109.47600 * 120.00130 * 2 1 3 23 23 F 1.39899 * 109.47391 * 59.99847 * 22 2 1 24 24 F 1.39903 * 109.47605 * 180.02562 * 22 2 1 25 25 F 1.39907 * 109.47011 * 300.00099 * 22 2 1 26 26 H 1.08996 * 109.46683 * 175.26127 * 1 2 3 27 27 H 1.08995 * 109.47419 * 55.25856 * 1 2 3 28 28 H 1.09000 * 109.47091 * 295.25457 * 1 2 3 29 29 H 1.09002 * 109.58868 * 353.41582 * 7 6 4 30 30 H 1.08998 * 109.59046 * 113.84492 * 7 6 4 31 31 H 1.09003 * 109.56140 * 185.55525 * 8 7 6 32 32 H 1.09000 * 109.38684 * 65.51751 * 8 7 6 33 33 H 1.09005 * 109.45788 * 301.21726 * 9 8 7 34 34 H 1.09002 * 109.44699 * 181.25545 * 9 8 7 35 35 H 0.97001 * 120.00193 * 94.85082 * 12 10 9 36 36 H 0.96994 * 119.99736 * 179.97438 * 16 15 13 37 37 H 1.08994 * 109.58630 * 246.15931 * 21 6 4 38 38 H 1.09007 * 109.58648 * 6.43857 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.3483 -1.8797 -1.1692 6 7 2.1307 -0.0462 -2.3992 7 6 1.8518 1.3948 -2.4670 8 6 0.8084 1.6490 -3.5535 9 6 1.2891 1.0387 -4.8720 10 6 1.4565 -0.4733 -4.7051 11 1 0.5062 -0.9135 -4.4032 12 7 1.8861 -1.0615 -5.9762 13 6 0.9559 -1.4047 -6.9209 14 1 -0.0943 -1.2420 -6.7286 15 6 1.3629 -1.9625 -8.1251 16 7 0.4689 -2.2919 -9.0332 17 14 3.1793 -2.2445 -8.4573 18 1 3.5644 -3.5988 -7.9851 19 1 3.4385 -2.1364 -9.9155 20 1 3.9791 -1.2227 -7.7352 21 6 2.5127 -0.7505 -3.6307 22 6 2.0401 -0.7212 1.2491 23 9 1.5738 -2.0402 1.2492 24 9 3.4391 -0.7207 1.2494 25 9 1.5738 -0.0617 2.3915 26 1 -0.3632 -1.0241 -0.0849 27 1 -0.3634 0.5856 -0.8444 28 1 -0.3633 0.4384 0.9294 29 1 1.4681 1.7384 -1.5063 30 1 2.7677 1.9332 -2.7107 31 1 0.6670 2.7225 -3.6796 32 1 -0.1361 1.1893 -3.2627 33 1 2.2455 1.4816 -5.1498 34 1 0.5557 1.2388 -5.6532 35 1 2.8293 -1.2079 -6.1487 36 1 0.7533 -2.6813 -9.8748 37 1 3.4836 -0.3907 -3.9712 38 1 2.5675 -1.8218 -3.4370 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999894804.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:36 Heat of formation + Delta-G solvation = -199.257769 kcal Electronic energy + Delta-G solvation = -24960.893169 eV Core-core repulsion = 20808.669519 eV Total energy + Delta-G solvation = -4152.223650 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.13906 -48.65241 -48.57583 -41.50588 -38.91152 -36.44431 -35.14347 -33.77305 -32.97738 -30.55474 -27.51515 -26.74440 -25.75382 -23.91287 -23.37508 -21.69411 -20.51635 -19.81145 -19.55826 -19.38284 -18.42752 -18.12922 -16.87538 -16.48876 -16.33221 -15.99822 -15.52972 -15.39187 -15.32869 -15.19386 -15.02521 -14.77840 -14.72737 -14.70557 -14.47985 -14.34925 -14.03473 -13.87277 -13.39034 -13.08242 -13.01238 -12.96081 -12.51251 -12.41035 -12.21195 -11.92309 -11.83695 -11.76652 -11.70461 -10.98208 -10.96568 -9.80116 -9.33313 -8.04335 -5.38865 1.25990 1.36551 1.40677 1.45153 1.48110 1.90087 2.46951 2.63637 2.89564 2.98224 3.27148 3.46818 3.55405 3.79269 3.83533 3.96350 4.01669 4.11945 4.18208 4.34143 4.57486 4.61243 4.64386 4.72789 4.80151 4.84282 5.02763 5.11087 5.16596 5.37211 5.41477 5.54995 5.75110 6.18690 6.22999 6.89042 7.04938 7.79241 7.97968 9.17024 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.027178 B = 0.003915 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.999299 B = 7150.822075 C = 7514.354950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.151 4.151 3 H 0.178 0.822 4 C 0.514 3.486 5 O -0.572 6.572 6 N -0.594 5.594 7 C 0.096 3.904 8 C -0.125 4.125 9 C -0.132 4.132 10 C 0.169 3.831 11 H 0.035 0.965 12 N -0.751 5.751 13 C -0.229 4.229 14 H 0.056 0.944 15 C -0.061 4.061 16 N -0.983 5.983 17 Si 0.952 3.048 18 H -0.283 1.283 19 H -0.295 1.295 20 H -0.247 1.247 21 C 0.114 3.886 22 C 0.465 3.535 23 F -0.185 7.185 24 F -0.190 7.190 25 F -0.172 7.172 26 H 0.055 0.945 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.124 0.876 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.366 0.634 36 H 0.258 0.742 37 H 0.081 0.919 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.110 13.761 22.757 26.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 H 0.196 0.804 4 C 0.302 3.698 5 O -0.451 6.451 6 N -0.325 5.325 7 C -0.025 4.025 8 C -0.164 4.164 9 C -0.172 4.172 10 C 0.060 3.940 11 H 0.053 0.947 12 N -0.394 5.394 13 C -0.360 4.360 14 H 0.074 0.926 15 C -0.253 4.253 16 N -0.634 5.634 17 Si 0.780 3.220 18 H -0.210 1.210 19 H -0.221 1.221 20 H -0.172 1.172 21 C -0.010 4.010 22 C 0.411 3.589 23 F -0.167 7.167 24 F -0.171 7.171 25 F -0.153 7.153 26 H 0.075 0.925 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.141 0.859 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.199 0.801 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.087 13.107 22.721 26.412 hybrid contribution 0.887 -1.019 -0.832 1.586 sum 3.974 12.089 21.889 25.319 Atomic orbital electron populations 1.21917 0.87186 1.04476 1.06968 1.22755 1.02828 1.03741 0.87982 0.80443 1.20400 0.77673 0.86585 0.85157 1.90801 1.50669 1.18222 1.85371 1.48028 1.66988 1.10945 1.06584 1.22229 1.00587 0.77843 1.01822 1.21839 0.98503 1.02731 0.93308 1.22082 1.01427 0.95616 0.98047 1.20636 0.95565 0.93583 0.84204 0.94696 1.42663 1.04973 1.76021 1.15747 1.18946 0.89626 1.32522 0.94870 0.92579 1.25470 1.01872 1.01442 0.96469 1.69876 1.34597 1.50251 1.08629 0.85450 0.80977 0.78652 0.76947 1.20991 1.22138 1.17180 1.21690 0.98011 0.97721 0.83538 1.20176 0.75243 0.77762 0.85763 1.93206 1.88311 1.38395 1.96745 1.93183 1.30684 1.96437 1.96832 1.93198 1.88314 1.80455 1.53323 0.92536 0.87588 0.87365 0.85859 0.88740 0.87510 0.91621 0.91634 0.93846 0.80098 0.93310 0.90082 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.83 71.98 0.64 -1.12 16 2 C -0.15 -2.35 1.86 -11.54 -0.02 -2.37 16 3 H 0.18 1.14 6.36 -2.38 -0.02 1.13 16 4 C 0.51 12.96 6.56 87.66 0.57 13.53 16 5 O -0.57 -20.41 14.58 -3.04 -0.04 -20.46 16 6 N -0.59 -13.56 2.98 -819.73 -2.44 -16.00 16 7 C 0.10 1.25 6.13 86.22 0.53 1.78 16 8 C -0.13 -2.10 6.06 30.53 0.19 -1.91 16 9 C -0.13 -3.73 5.47 30.62 0.17 -3.57 16 10 C 0.17 6.04 2.92 45.07 0.13 6.17 16 11 H 0.03 1.41 8.08 -2.39 -0.02 1.39 16 12 N -0.75 -34.19 4.93 -322.58 -1.59 -35.78 16 13 C -0.23 -12.89 10.41 84.03 0.88 -12.01 16 14 H 0.06 3.48 8.06 -2.91 -0.02 3.45 16 15 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 16 N -0.98 -62.94 13.97 21.65 0.30 -62.64 16 17 Si 0.95 45.29 27.74 68.60 1.90 47.19 16 18 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 19 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 20 H -0.25 -10.42 6.52 99.48 0.65 -9.77 16 21 C 0.11 3.49 5.89 86.36 0.51 4.00 16 22 C 0.47 9.62 2.47 71.98 0.18 9.80 16 23 F -0.19 -5.04 15.54 44.97 0.70 -4.34 16 24 F -0.19 -4.55 16.94 44.97 0.76 -3.79 16 25 F -0.17 -2.91 16.72 44.97 0.75 -2.16 16 26 H 0.06 0.96 7.94 -2.39 -0.02 0.94 16 27 H 0.11 0.89 7.66 -2.39 -0.02 0.87 16 28 H 0.11 0.78 7.67 -2.39 -0.02 0.76 16 29 H 0.12 0.62 5.07 -2.39 -0.01 0.61 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.37 15.98 5.66 -92.71 -0.52 15.45 16 36 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 37 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.07 2.45 7.04 -2.38 -0.02 2.43 16 Total: -1.00 -77.09 316.92 5.08 -72.01 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.51 Total: 14.78 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 4.23 Total: 11.19 kcal Atomic # 7 Polarization: -110.69 SS G_CDS: -3.73 Total: -114.42 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.04 Total: -20.46 kcal Atomic # 9 Polarization: -12.50 SS G_CDS: 2.21 Total: -10.29 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.90 Total: 47.19 kcal Total: -77.09 5.08 -72.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999894804.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.248 kcal (2) G-P(sol) polarization free energy of solvation -77.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds