Wall clock time and date at job start Tue Mar 31 2020 06:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47208 * 2 1 4 4 C 1.50700 * 109.47119 * 120.00043 * 2 1 3 5 5 O 1.21284 * 120.00124 * 114.65532 * 4 2 1 6 6 N 1.34774 * 120.00309 * 294.65968 * 4 2 1 7 7 C 1.47022 * 125.64532 * 354.37461 * 6 4 2 8 8 C 1.54324 * 107.27174 * 178.89741 * 7 6 4 9 9 C 1.55154 * 102.94150 * 337.80898 * 8 7 6 10 10 H 1.08995 * 111.00760 * 277.42278 * 9 8 7 11 11 N 1.46504 * 111.00326 * 153.61127 * 9 8 7 12 12 C 1.36937 * 119.99713 * 89.58320 * 11 9 8 13 13 H 1.07996 * 120.00367 * 0.02562 * 12 11 9 14 14 C 1.38817 * 119.99654 * 180.02562 * 12 11 9 15 15 N 1.31621 * 120.00103 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99928 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46922 * 59.99390 * 16 14 12 18 18 H 1.48496 * 109.47065 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46748 * 299.99954 * 16 14 12 20 20 C 1.47424 * 125.65342 * 174.32919 * 6 4 2 21 21 C 1.52998 * 109.46806 * 240.00109 * 2 1 3 22 22 F 1.39905 * 109.47054 * 299.99917 * 21 2 1 23 23 F 1.39900 * 109.47336 * 60.00117 * 21 2 1 24 24 F 1.39904 * 109.46803 * 180.02562 * 21 2 1 25 25 H 1.09004 * 109.46527 * 305.91946 * 1 2 3 26 26 H 1.08993 * 109.47167 * 65.91897 * 1 2 3 27 27 H 1.08997 * 109.47226 * 185.92239 * 1 2 3 28 28 H 1.09001 * 109.47261 * 164.96235 * 3 2 1 29 29 H 1.09000 * 109.47263 * 284.96614 * 3 2 1 30 30 H 1.08997 * 109.47106 * 44.96638 * 3 2 1 31 31 H 1.09004 * 109.88055 * 59.48645 * 7 6 4 32 32 H 1.08996 * 109.88961 * 298.32014 * 7 6 4 33 33 H 1.09000 * 110.72316 * 219.44706 * 8 7 6 34 34 H 1.08995 * 110.87208 * 96.24669 * 8 7 6 35 35 H 0.96995 * 120.00073 * 269.58478 * 11 9 8 36 36 H 0.96991 * 119.99893 * 180.02562 * 15 14 12 37 37 H 1.09003 * 110.36630 * 85.32765 * 20 6 4 38 38 H 1.09005 * 110.36357 * 323.01135 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.6476 -1.7500 1.1218 6 7 1.7979 -0.1907 2.4517 7 6 1.1721 1.1118 2.7228 8 6 1.0859 1.2685 4.2556 9 6 1.1512 -0.1977 4.7590 10 1 0.1706 -0.6712 4.7114 11 7 1.6972 -0.2628 6.1169 12 6 0.8588 -0.1806 7.1966 13 1 -0.2048 -0.0682 7.0471 14 6 1.3762 -0.2417 8.4833 15 7 2.6725 -0.3793 8.6655 16 14 0.2326 -0.1303 9.9561 17 1 -0.7453 -1.2470 9.9090 18 1 1.0269 -0.2209 11.2075 19 1 -0.4931 1.1648 9.9223 20 6 2.1256 -0.8343 3.7368 21 6 2.0400 -0.7212 -1.2493 22 9 1.5736 -2.0402 -1.2492 23 9 1.5737 -0.0617 -2.3915 24 9 3.4390 -0.7217 -1.2490 25 1 -0.3632 0.6029 0.8323 26 1 -0.3633 0.4193 -0.9382 27 1 -0.3633 -1.0221 0.1060 28 1 3.0969 1.4542 0.2666 29 1 1.9110 1.8735 -0.9928 30 1 1.4757 2.0274 0.7262 31 1 0.1718 1.1395 2.2905 32 1 1.7822 1.9111 2.3022 33 1 0.1429 1.7333 4.5433 34 1 1.9297 1.8445 4.6351 35 1 2.6524 -0.3641 6.2512 36 1 3.0339 -0.4224 9.5645 37 1 3.1582 -0.6230 4.0146 38 1 1.9611 -1.9101 3.6751 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019687705.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:27 Heat of formation + Delta-G solvation = -168.103164 kcal Electronic energy + Delta-G solvation = -25004.028642 eV Core-core repulsion = 20853.155957 eV Total energy + Delta-G solvation = -4150.872685 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.20510 -47.71402 -47.57501 -40.44894 -37.55045 -35.72199 -34.11373 -31.50687 -29.72453 -28.11367 -27.77620 -26.37268 -24.45526 -23.28266 -21.75208 -20.28791 -19.77133 -18.47033 -18.40758 -17.53828 -17.24197 -16.58379 -16.09895 -15.26564 -14.97198 -14.55339 -14.45713 -14.20682 -14.03103 -13.93725 -13.84398 -13.75332 -13.66042 -13.38255 -13.11623 -13.03200 -12.78070 -12.54063 -12.27301 -11.92576 -11.89345 -11.75345 -11.23305 -11.18816 -10.85758 -10.77022 -10.37077 -10.15564 -9.90436 -9.79792 -9.02183 -8.58935 -7.12438 -5.88221 -3.19564 2.36158 2.43174 2.89530 3.37461 3.42405 3.43530 3.49586 3.83753 3.86599 4.32847 4.45064 4.48897 4.59405 4.87647 4.96365 5.08661 5.13047 5.13949 5.28447 5.35519 5.39617 5.48727 5.62853 5.70494 5.73815 5.86654 6.04748 6.10889 6.25728 6.39239 6.49854 6.80293 7.46628 7.58748 7.98199 8.28822 9.40568 9.93510 10.28239 11.33753 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.038909 B = 0.003399 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.453287 B = 8236.056066 C = 8426.889161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.160 4.160 4 C 0.539 3.461 5 O -0.525 6.525 6 N -0.602 5.602 7 C 0.087 3.913 8 C -0.157 4.157 9 C 0.173 3.827 10 H 0.066 0.934 11 N -0.714 5.714 12 C -0.249 4.249 13 H 0.072 0.928 14 C -0.008 4.008 15 N -0.929 5.929 16 Si 0.910 3.090 17 H -0.285 1.285 18 H -0.290 1.290 19 H -0.285 1.285 20 C 0.099 3.901 21 C 0.476 3.524 22 F -0.170 7.170 23 F -0.182 7.182 24 F -0.173 7.173 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.387 0.613 36 H 0.258 0.742 37 H 0.072 0.928 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.255 5.257 -19.694 20.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.132 4.132 3 C -0.217 4.217 4 C 0.325 3.675 5 O -0.401 6.401 6 N -0.335 5.335 7 C -0.036 4.036 8 C -0.198 4.198 9 C 0.060 3.940 10 H 0.084 0.916 11 N -0.354 5.354 12 C -0.379 4.379 13 H 0.090 0.910 14 C -0.204 4.204 15 N -0.576 5.576 16 Si 0.740 3.260 17 H -0.211 1.211 18 H -0.216 1.216 19 H -0.211 1.211 20 C -0.023 4.023 21 C 0.421 3.579 22 F -0.152 7.152 23 F -0.163 7.163 24 F -0.155 7.155 25 H 0.109 0.891 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.221 0.779 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.010 4.634 -19.675 20.607 hybrid contribution -0.159 0.023 0.650 0.669 sum -4.169 4.657 -19.025 20.025 Atomic orbital electron populations 1.22038 0.89054 1.04844 1.04947 1.22019 1.00865 0.98890 0.91400 1.22239 1.03153 0.91228 1.05053 1.19259 0.80266 0.84981 0.83028 1.90807 1.40186 1.23459 1.85682 1.48195 1.59881 1.20329 1.05098 1.22592 0.97338 0.84707 0.98959 1.23462 1.03175 1.02097 0.91058 1.21288 0.95419 0.91903 0.85354 0.91614 1.42249 1.07459 1.87123 0.98555 1.19159 0.90399 1.43409 0.84967 0.90988 1.24776 0.95911 1.02223 0.97531 1.69648 1.10466 1.56152 1.21383 0.86242 0.79621 0.77916 0.82214 1.21126 1.21614 1.21138 1.22647 1.00222 0.98141 0.81308 1.19757 0.75943 0.77767 0.84439 1.93210 1.88276 1.37054 1.96632 1.93153 1.88596 1.80893 1.53682 1.93202 1.29252 1.96344 1.96663 0.89119 0.90016 0.90582 0.90625 0.90190 0.88574 0.91262 0.90976 0.90519 0.90370 0.77879 0.93218 0.90999 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.04 37.16 0.30 -0.99 16 2 C -0.13 -1.40 0.32 -155.66 -0.05 -1.45 16 3 C -0.16 -1.33 7.37 37.16 0.27 -1.06 16 4 C 0.54 7.95 6.28 -10.99 -0.07 7.88 16 5 O -0.53 -9.83 15.15 5.55 0.08 -9.75 16 6 N -0.60 -8.48 3.32 -170.52 -0.57 -9.05 16 7 C 0.09 0.97 5.01 -3.06 -0.02 0.96 16 8 C -0.16 -2.28 6.65 -24.90 -0.17 -2.44 16 9 C 0.17 3.10 3.70 -65.78 -0.24 2.86 16 10 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 11 N -0.71 -16.65 5.26 -51.35 -0.27 -16.92 16 12 C -0.25 -6.48 9.97 -15.06 -0.15 -6.63 16 13 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 14 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 15 N -0.93 -27.00 13.06 55.49 0.72 -26.27 16 16 Si 0.91 21.43 29.55 -169.99 -5.02 16.40 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.10 1.66 6.52 -2.53 -0.02 1.65 16 21 C 0.48 5.98 1.96 37.16 0.07 6.05 16 22 F -0.17 -2.45 15.87 2.25 0.04 -2.41 16 23 F -0.18 -1.97 15.96 2.25 0.04 -1.93 16 24 F -0.17 -2.47 16.25 2.25 0.04 -2.43 16 25 H 0.09 0.65 5.22 -51.93 -0.27 0.38 16 26 H 0.08 0.55 7.64 -51.93 -0.40 0.15 16 27 H 0.08 0.72 7.97 -51.93 -0.41 0.30 16 28 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 29 H 0.08 0.55 7.43 -51.93 -0.39 0.16 16 30 H 0.10 0.64 4.92 -51.93 -0.26 0.39 16 31 H 0.07 0.62 5.54 -51.93 -0.29 0.33 16 32 H 0.07 0.68 5.87 -51.93 -0.30 0.37 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.39 9.70 7.73 -40.82 -0.32 9.38 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.07 1.26 8.00 -51.93 -0.42 0.84 16 38 H 0.08 1.39 8.09 -51.93 -0.42 0.97 16 LS Contribution 314.06 15.07 4.73 4.73 Total: -1.00 -30.82 314.06 -5.07 -35.89 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -4.70 Total: 5.22 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -0.16 Total: 6.52 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: -0.11 Total: -52.24 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.08 Total: -9.75 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.11 Total: -6.78 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.82 -5.07 -35.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019687705.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.214 kcal (2) G-P(sol) polarization free energy of solvation -30.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds