Wall clock time and date at job start Tue Mar 31 2020 06:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47208 * 2 1 4 4 C 1.50700 * 109.47119 * 120.00043 * 2 1 3 5 5 O 1.21284 * 120.00124 * 114.65532 * 4 2 1 6 6 N 1.34774 * 120.00309 * 294.65968 * 4 2 1 7 7 C 1.47022 * 125.64532 * 354.37461 * 6 4 2 8 8 C 1.54324 * 107.27174 * 178.89741 * 7 6 4 9 9 C 1.55154 * 102.94150 * 337.80898 * 8 7 6 10 10 H 1.08995 * 111.00760 * 277.42278 * 9 8 7 11 11 N 1.46504 * 111.00326 * 153.61127 * 9 8 7 12 12 C 1.36937 * 119.99713 * 89.58320 * 11 9 8 13 13 H 1.07996 * 120.00367 * 0.02562 * 12 11 9 14 14 C 1.38817 * 119.99654 * 180.02562 * 12 11 9 15 15 N 1.31621 * 120.00103 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99928 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46922 * 59.99390 * 16 14 12 18 18 H 1.48496 * 109.47065 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46748 * 299.99954 * 16 14 12 20 20 C 1.47424 * 125.65342 * 174.32919 * 6 4 2 21 21 C 1.52998 * 109.46806 * 240.00109 * 2 1 3 22 22 F 1.39905 * 109.47054 * 299.99917 * 21 2 1 23 23 F 1.39900 * 109.47336 * 60.00117 * 21 2 1 24 24 F 1.39904 * 109.46803 * 180.02562 * 21 2 1 25 25 H 1.09004 * 109.46527 * 305.91946 * 1 2 3 26 26 H 1.08993 * 109.47167 * 65.91897 * 1 2 3 27 27 H 1.08997 * 109.47226 * 185.92239 * 1 2 3 28 28 H 1.09001 * 109.47261 * 164.96235 * 3 2 1 29 29 H 1.09000 * 109.47263 * 284.96614 * 3 2 1 30 30 H 1.08997 * 109.47106 * 44.96638 * 3 2 1 31 31 H 1.09004 * 109.88055 * 59.48645 * 7 6 4 32 32 H 1.08996 * 109.88961 * 298.32014 * 7 6 4 33 33 H 1.09000 * 110.72316 * 219.44706 * 8 7 6 34 34 H 1.08995 * 110.87208 * 96.24669 * 8 7 6 35 35 H 0.96995 * 120.00073 * 269.58478 * 11 9 8 36 36 H 0.96991 * 119.99893 * 180.02562 * 15 14 12 37 37 H 1.09003 * 110.36630 * 85.32765 * 20 6 4 38 38 H 1.09005 * 110.36357 * 323.01135 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.6476 -1.7500 1.1218 6 7 1.7979 -0.1907 2.4517 7 6 1.1721 1.1118 2.7228 8 6 1.0859 1.2685 4.2556 9 6 1.1512 -0.1977 4.7590 10 1 0.1706 -0.6712 4.7114 11 7 1.6972 -0.2628 6.1169 12 6 0.8588 -0.1806 7.1966 13 1 -0.2048 -0.0682 7.0471 14 6 1.3762 -0.2417 8.4833 15 7 2.6725 -0.3793 8.6655 16 14 0.2326 -0.1303 9.9561 17 1 -0.7453 -1.2470 9.9090 18 1 1.0269 -0.2209 11.2075 19 1 -0.4931 1.1648 9.9223 20 6 2.1256 -0.8343 3.7368 21 6 2.0400 -0.7212 -1.2493 22 9 1.5736 -2.0402 -1.2492 23 9 1.5737 -0.0617 -2.3915 24 9 3.4390 -0.7217 -1.2490 25 1 -0.3632 0.6029 0.8323 26 1 -0.3633 0.4193 -0.9382 27 1 -0.3633 -1.0221 0.1060 28 1 3.0969 1.4542 0.2666 29 1 1.9110 1.8735 -0.9928 30 1 1.4757 2.0274 0.7262 31 1 0.1718 1.1395 2.2905 32 1 1.7822 1.9111 2.3022 33 1 0.1429 1.7333 4.5433 34 1 1.9297 1.8445 4.6351 35 1 2.6524 -0.3641 6.2512 36 1 3.0339 -0.4224 9.5645 37 1 3.1582 -0.6230 4.0146 38 1 1.9611 -1.9101 3.6751 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019687705.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:26 Heat of formation + Delta-G solvation = -188.581858 kcal Electronic energy + Delta-G solvation = -25004.916665 eV Core-core repulsion = 20853.155957 eV Total energy + Delta-G solvation = -4151.760708 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.19043 -48.66667 -48.62801 -41.59210 -38.86608 -36.73164 -35.77990 -33.21392 -31.08268 -29.46318 -28.53794 -27.26360 -25.99861 -24.81214 -22.77069 -21.69647 -20.85488 -19.47857 -19.41033 -19.30384 -18.38377 -17.71299 -17.41255 -16.41891 -16.29539 -15.87352 -15.60249 -15.35620 -15.27278 -15.04518 -14.91124 -14.79480 -14.75482 -14.53072 -14.38904 -14.14506 -13.95299 -13.41821 -13.29770 -13.14897 -13.09619 -12.87185 -12.68990 -12.49256 -12.38439 -12.12658 -12.04442 -11.71065 -11.54335 -11.04647 -10.90852 -9.77130 -9.04080 -7.94034 -5.24319 1.30101 1.36701 1.51219 1.53415 1.59377 1.83808 2.55701 2.58051 2.89297 2.93555 3.36398 3.44745 3.62693 3.67775 3.74234 3.87844 4.03466 4.18795 4.25055 4.45952 4.48954 4.54808 4.61641 4.65095 4.71846 4.80355 4.97670 5.09206 5.10381 5.14432 5.27729 5.44762 5.55378 6.26384 6.33415 6.82894 7.33459 8.05040 8.28282 9.29145 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.038909 B = 0.003399 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.453287 B = 8236.056066 C = 8426.889161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.159 4.159 4 C 0.534 3.466 5 O -0.574 6.574 6 N -0.599 5.599 7 C 0.089 3.911 8 C -0.145 4.145 9 C 0.166 3.834 10 H 0.067 0.933 11 N -0.730 5.730 12 C -0.241 4.241 13 H 0.083 0.917 14 C -0.073 4.073 15 N -0.970 5.970 16 Si 0.973 3.027 17 H -0.279 1.279 18 H -0.300 1.300 19 H -0.273 1.273 20 C 0.108 3.892 21 C 0.469 3.531 22 F -0.186 7.186 23 F -0.169 7.169 24 F -0.188 7.188 25 H 0.110 0.890 26 H 0.106 0.894 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.373 0.627 36 H 0.251 0.749 37 H 0.058 0.942 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.467 7.371 -21.178 23.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.122 4.122 3 C -0.216 4.216 4 C 0.322 3.678 5 O -0.454 6.454 6 N -0.331 5.331 7 C -0.031 4.031 8 C -0.186 4.186 9 C 0.056 3.944 10 H 0.084 0.916 11 N -0.369 5.369 12 C -0.372 4.372 13 H 0.101 0.899 14 C -0.265 4.265 15 N -0.620 5.620 16 Si 0.802 3.198 17 H -0.206 1.206 18 H -0.227 1.227 19 H -0.199 1.199 20 C -0.016 4.016 21 C 0.414 3.586 22 F -0.167 7.167 23 F -0.150 7.150 24 F -0.169 7.169 25 H 0.129 0.871 26 H 0.125 0.875 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.138 0.862 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.206 0.794 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.280 6.789 -21.217 23.145 hybrid contribution 0.527 -0.671 0.992 1.309 sum -5.753 6.118 -20.224 21.899 Atomic orbital electron populations 1.22142 0.86684 1.04767 1.07162 1.22062 1.02505 0.99517 0.88123 1.22344 1.02750 0.89345 1.07154 1.19974 0.79353 0.84521 0.83993 1.90785 1.42372 1.25792 1.86439 1.48194 1.59749 1.21091 1.04035 1.22826 0.99800 0.83846 0.96674 1.23246 1.03383 0.98659 0.93306 1.21463 0.95150 0.94587 0.83236 0.91552 1.42417 1.06665 1.87554 1.00274 1.19586 0.91148 1.40783 0.85728 0.89884 1.25563 0.97177 1.03458 1.00311 1.69813 1.12295 1.58730 1.21210 0.85226 0.77706 0.78316 0.78575 1.20560 1.22698 1.19907 1.22310 0.99216 0.97348 0.82764 1.20095 0.75380 0.77470 0.85648 1.93179 1.88357 1.38396 1.96771 1.93174 1.88316 1.80436 1.53099 1.93173 1.30548 1.96375 1.96798 0.87116 0.87544 0.91870 0.91712 0.88074 0.86172 0.87572 0.87986 0.89092 0.91777 0.79445 0.94050 0.92410 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.04 71.98 0.58 -1.40 16 2 C -0.12 -2.27 0.32 -52.93 -0.02 -2.29 16 3 C -0.16 -2.02 7.37 71.98 0.53 -1.48 16 4 C 0.53 15.13 6.28 87.66 0.55 15.68 16 5 O -0.57 -21.85 15.15 -3.04 -0.05 -21.90 16 6 N -0.60 -15.85 3.32 -811.79 -2.70 -18.55 16 7 C 0.09 1.65 5.01 86.73 0.43 2.09 16 8 C -0.15 -3.85 6.65 31.78 0.21 -3.64 16 9 C 0.17 5.83 3.70 46.38 0.17 6.00 16 10 H 0.07 2.33 8.11 -2.39 -0.02 2.32 16 11 N -0.73 -34.37 5.26 -316.38 -1.67 -36.04 16 12 C -0.24 -12.50 9.97 84.03 0.84 -11.66 16 13 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 14 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 15 N -0.97 -57.78 13.06 21.65 0.28 -57.49 16 16 Si 0.97 44.15 29.55 68.60 2.03 46.18 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 20 C 0.11 3.63 6.52 86.85 0.57 4.19 16 21 C 0.47 11.09 1.96 71.98 0.14 11.23 16 22 F -0.19 -5.26 15.87 44.97 0.71 -4.55 16 23 F -0.17 -3.23 15.96 44.97 0.72 -2.51 16 24 F -0.19 -5.25 16.25 44.97 0.73 -4.52 16 25 H 0.11 0.98 5.22 -2.39 -0.01 0.97 16 26 H 0.11 0.92 7.64 -2.39 -0.02 0.90 16 27 H 0.06 1.03 7.97 -2.39 -0.02 1.01 16 28 H 0.06 1.00 8.05 -2.39 -0.02 0.98 16 29 H 0.10 0.92 7.43 -2.39 -0.02 0.90 16 30 H 0.12 0.91 4.92 -2.39 -0.01 0.90 16 31 H 0.11 1.27 5.54 -2.39 -0.01 1.26 16 32 H 0.10 1.39 5.87 -2.39 -0.01 1.37 16 33 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.37 19.35 7.73 -92.71 -0.72 18.63 16 36 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 37 H 0.06 2.10 8.00 -2.39 -0.02 2.08 16 38 H 0.06 2.22 8.09 -2.38 -0.02 2.20 16 Total: -1.00 -69.55 314.06 4.93 -64.63 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.39 Total: 19.55 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 4.47 Total: 15.19 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -4.08 Total: -112.08 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.05 Total: -21.90 kcal Atomic # 9 Polarization: -13.73 SS G_CDS: 2.16 Total: -11.57 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -69.55 4.93 -64.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019687705.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.953 kcal (2) G-P(sol) polarization free energy of solvation -69.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds