Wall clock time and date at job start Tue Mar 31 2020 07:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.49787 * 2 1 4 4 C 1.52771 * 109.56263 * 240.03596 * 2 1 3 5 5 N 1.46924 * 109.00549 * 185.55168 * 4 2 1 6 6 C 1.34777 * 120.62960 * 233.57860 * 5 4 2 7 7 O 1.21283 * 119.99665 * 359.72547 * 6 5 4 8 8 C 1.50697 * 120.00075 * 179.72007 * 6 5 4 9 9 C 1.53006 * 109.47239 * 180.02562 * 8 6 5 10 10 F 1.39900 * 109.46764 * 60.00143 * 9 8 6 11 11 F 1.39897 * 109.47129 * 180.02562 * 9 8 6 12 12 F 1.39903 * 109.46814 * 300.00614 * 9 8 6 13 13 C 1.46929 * 118.74050 * 53.31208 * 5 4 2 14 14 C 1.53190 * 108.77295 * 306.64053 * 13 5 4 15 15 C 1.53038 * 109.31664 * 54.63341 * 14 13 5 16 16 H 1.08993 * 109.46159 * 178.61370 * 15 14 13 17 17 N 1.46507 * 109.45660 * 58.65158 * 15 14 13 18 18 C 1.36942 * 119.99631 * 85.00378 * 17 15 14 19 19 H 1.08003 * 119.99607 * 359.97438 * 18 17 15 20 20 C 1.38807 * 120.00110 * 180.02562 * 18 17 15 21 21 N 1.31619 * 120.00167 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99937 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47079 * 90.00107 * 22 20 18 24 24 H 1.48501 * 109.47251 * 210.00478 * 22 20 18 25 25 H 1.48503 * 109.47212 * 330.00112 * 22 20 18 26 26 H 1.08996 * 109.46609 * 299.92848 * 1 2 3 27 27 H 1.08993 * 109.47098 * 59.92948 * 1 2 3 28 28 H 1.08999 * 109.46965 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.50797 * 65.66899 * 4 2 1 30 30 H 1.09000 * 109.42951 * 305.39008 * 4 2 1 31 31 H 1.09001 * 109.46613 * 60.00647 * 8 6 5 32 32 H 1.09000 * 109.47374 * 300.00393 * 8 6 5 33 33 H 1.08998 * 109.58407 * 66.42891 * 13 5 4 34 34 H 1.08996 * 109.58299 * 186.70918 * 13 5 4 35 35 H 1.09000 * 109.49630 * 174.59147 * 14 13 5 36 36 H 1.09005 * 109.49537 * 294.68145 * 14 13 5 37 37 H 0.96994 * 120.00364 * 265.00003 * 17 15 14 38 38 H 0.96998 * 120.00051 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0416 -0.7190 -1.2471 5 7 3.5046 -0.8294 -1.1695 6 6 4.2811 -0.3861 -2.1780 7 8 3.7731 0.1050 -3.1637 8 6 5.7806 -0.5006 -2.0807 9 6 6.4191 0.0723 -3.3477 10 9 6.0619 1.4183 -3.4821 11 9 7.8111 -0.0345 -3.2576 12 9 5.9679 -0.6434 -4.4619 13 6 4.1053 -1.4267 0.0309 14 6 3.5709 -0.6948 1.2660 15 6 2.0409 -0.7228 1.2485 16 1 1.6583 -0.2241 2.1389 17 7 1.5784 -2.1129 1.2311 18 6 1.4469 -2.8053 2.4052 19 1 1.6846 -2.3268 3.3438 20 6 1.0093 -4.1225 2.3888 21 7 0.8834 -4.7882 3.5173 22 14 0.5989 -4.9503 0.7653 23 1 1.8151 -5.6085 0.2240 24 1 -0.4600 -5.9685 0.9825 25 1 0.1155 -3.9318 -0.2013 26 1 -0.3632 0.5127 0.8906 27 1 -0.3633 0.5149 -0.8893 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7646 -0.1500 -2.1346 30 1 1.6020 -1.7152 -1.2973 31 1 6.0587 -1.5493 -1.9756 32 1 6.1321 0.0574 -1.2129 33 1 3.8376 -2.4818 0.0870 34 1 5.1898 -1.3269 -0.0149 35 1 3.9336 -1.1893 2.1672 36 1 3.9161 0.3391 1.2539 37 1 1.3653 -2.5427 0.3881 38 1 0.5772 -5.7086 3.5058 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035944691.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:42 Heat of formation + Delta-G solvation = -178.542599 kcal Electronic energy + Delta-G solvation = -25117.052136 eV Core-core repulsion = 20965.726763 eV Total energy + Delta-G solvation = -4151.325373 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.19093 -47.73592 -47.59966 -40.36312 -38.05656 -34.62253 -33.20322 -31.87751 -31.55452 -29.86701 -26.70707 -25.46098 -23.78504 -23.25204 -21.80924 -20.17552 -18.91504 -18.66874 -18.37151 -17.90785 -17.45651 -16.76175 -15.69718 -15.61994 -14.86081 -14.63921 -14.52906 -14.44849 -14.07262 -13.89808 -13.81549 -13.77772 -13.74575 -13.61914 -13.30713 -12.69399 -12.59214 -12.48219 -12.20894 -11.76869 -11.67854 -11.51400 -11.09889 -11.05685 -10.74573 -10.62167 -10.29478 -10.01034 -9.97064 -9.63712 -9.04755 -8.57040 -7.37708 -5.86556 -3.22615 2.37482 2.38892 2.92292 3.27546 3.30103 3.38136 3.54318 3.85069 3.87788 4.43848 4.48962 4.79303 4.83264 4.94287 5.02905 5.10323 5.22130 5.37292 5.50778 5.51317 5.63755 5.73787 5.82562 5.95725 6.11017 6.15596 6.28881 6.33044 6.41897 6.55790 6.65995 6.74711 7.30348 7.89190 7.93989 8.32364 9.10116 9.82648 10.01962 11.31709 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.022384 B = 0.004453 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.581962 B = 6286.915539 C = 6579.045602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 H 0.072 0.928 4 C 0.118 3.882 5 N -0.597 5.597 6 C 0.517 3.483 7 O -0.533 6.533 8 C -0.196 4.196 9 C 0.473 3.527 10 F -0.174 7.174 11 F -0.184 7.184 12 F -0.174 7.174 13 C 0.107 3.893 14 C -0.150 4.150 15 C 0.184 3.816 16 H 0.062 0.938 17 N -0.744 5.744 18 C -0.243 4.243 19 H 0.091 0.909 20 C 0.008 3.992 21 N -0.932 5.932 22 Si 0.877 3.123 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.278 1.278 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.360 0.640 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.833 10.018 -9.995 17.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.132 4.132 3 H 0.091 0.909 4 C -0.004 4.004 5 N -0.329 5.329 6 C 0.303 3.697 7 O -0.410 6.410 8 C -0.237 4.237 9 C 0.418 3.582 10 F -0.155 7.155 11 F -0.166 7.166 12 F -0.155 7.155 13 C -0.015 4.015 14 C -0.191 4.191 15 C 0.074 3.926 16 H 0.080 0.920 17 N -0.387 5.387 18 C -0.373 4.373 19 H 0.109 0.891 20 C -0.188 4.188 21 N -0.579 5.579 22 Si 0.708 3.292 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.204 1.204 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.194 0.806 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.544 10.195 -10.289 17.346 hybrid contribution -0.106 -0.817 -1.067 1.348 sum 9.439 9.378 -11.356 17.493 Atomic orbital electron populations 1.21677 0.94003 1.02914 1.01042 1.21690 0.96722 0.99362 0.95437 0.90936 1.21623 0.78012 1.01414 0.99328 1.48069 1.07331 1.59516 1.17987 1.19686 0.87586 0.78891 0.83501 1.90788 1.74834 1.44712 1.30678 1.23025 0.96152 1.07167 0.97325 1.19758 0.75921 0.76689 0.85847 1.93217 1.91511 1.34381 1.96417 1.93193 1.31004 1.95959 1.96428 1.93221 1.88799 1.77827 1.55669 1.21873 0.96649 0.99131 0.83880 1.22512 1.00146 0.99031 0.97424 1.20190 0.90873 0.86226 0.95331 0.92010 1.42847 1.80606 1.09398 1.05883 1.19046 1.37886 0.94083 0.86295 0.89130 1.24635 1.01400 0.96725 0.95998 1.69685 1.52905 1.10892 1.24445 0.86681 0.78231 0.79616 0.84685 1.21142 1.21667 1.20403 0.92214 0.93453 0.91597 0.89201 0.91209 0.84407 0.84381 0.89677 0.90809 0.89906 0.92736 0.80599 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.05 37.16 0.34 -1.63 16 2 C -0.11 -1.60 2.66 -90.72 -0.24 -1.84 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.12 1.73 5.39 -3.93 -0.02 1.71 16 5 N -0.60 -8.09 2.98 -173.03 -0.52 -8.60 16 6 C 0.52 6.97 7.47 -10.99 -0.08 6.89 16 7 O -0.53 -8.99 14.25 5.55 0.08 -8.91 16 8 C -0.20 -1.85 4.10 -27.88 -0.11 -1.97 16 9 C 0.47 5.38 2.89 37.16 0.11 5.49 16 10 F -0.17 -2.28 16.40 2.25 0.04 -2.25 16 11 F -0.18 -1.92 17.32 2.25 0.04 -1.88 16 12 F -0.17 -2.33 16.40 2.25 0.04 -2.30 16 13 C 0.11 1.36 6.09 -3.71 -0.02 1.33 16 14 C -0.15 -2.09 5.78 -26.61 -0.15 -2.24 16 15 C 0.18 3.02 2.53 -67.89 -0.17 2.85 16 16 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 17 N -0.74 -15.25 3.44 -53.38 -0.18 -15.44 16 18 C -0.24 -6.18 10.41 -15.06 -0.16 -6.34 16 19 H 0.09 2.49 8.06 -52.48 -0.42 2.07 16 20 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 21 N -0.93 -27.77 13.97 55.49 0.78 -27.00 16 22 Si 0.88 20.86 27.73 -169.99 -4.71 16.15 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.20 6.52 56.52 0.37 -5.83 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 1.08 7.54 -51.93 -0.39 0.69 16 29 H 0.09 1.33 7.01 -51.93 -0.36 0.97 16 30 H 0.07 1.11 6.64 -51.93 -0.34 0.77 16 31 H 0.14 0.98 7.94 -51.93 -0.41 0.57 16 32 H 0.14 0.93 7.70 -51.93 -0.40 0.53 16 33 H 0.08 1.27 7.74 -51.93 -0.40 0.87 16 34 H 0.07 0.68 5.93 -51.93 -0.31 0.37 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.36 7.46 3.80 -40.82 -0.16 7.30 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 314.53 15.07 4.74 4.74 Total: -1.00 -30.70 314.53 -5.22 -35.92 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -4.90 Total: 5.18 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -0.62 Total: 4.39 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 0.08 Total: -51.04 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 9 Polarization: -6.54 SS G_CDS: 0.11 Total: -6.42 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.71 Total: 16.15 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.70 -5.22 -35.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035944691.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.621 kcal (2) G-P(sol) polarization free energy of solvation -30.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds