Wall clock time and date at job start Tue Mar 31 2020 07:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.49787 * 2 1 4 4 C 1.52771 * 109.56263 * 240.03596 * 2 1 3 5 5 N 1.46924 * 109.00549 * 185.55168 * 4 2 1 6 6 C 1.34777 * 120.62960 * 233.57860 * 5 4 2 7 7 O 1.21283 * 119.99665 * 359.72547 * 6 5 4 8 8 C 1.50697 * 120.00075 * 179.72007 * 6 5 4 9 9 C 1.53006 * 109.47239 * 180.02562 * 8 6 5 10 10 F 1.39900 * 109.46764 * 60.00143 * 9 8 6 11 11 F 1.39897 * 109.47129 * 180.02562 * 9 8 6 12 12 F 1.39903 * 109.46814 * 300.00614 * 9 8 6 13 13 C 1.46929 * 118.74050 * 53.31208 * 5 4 2 14 14 C 1.53190 * 108.77295 * 306.64053 * 13 5 4 15 15 C 1.53038 * 109.31664 * 54.63341 * 14 13 5 16 16 H 1.08993 * 109.46159 * 178.61370 * 15 14 13 17 17 N 1.46507 * 109.45660 * 58.65158 * 15 14 13 18 18 C 1.36942 * 119.99631 * 85.00378 * 17 15 14 19 19 H 1.08003 * 119.99607 * 359.97438 * 18 17 15 20 20 C 1.38807 * 120.00110 * 180.02562 * 18 17 15 21 21 N 1.31619 * 120.00167 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99937 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47079 * 90.00107 * 22 20 18 24 24 H 1.48501 * 109.47251 * 210.00478 * 22 20 18 25 25 H 1.48503 * 109.47212 * 330.00112 * 22 20 18 26 26 H 1.08996 * 109.46609 * 299.92848 * 1 2 3 27 27 H 1.08993 * 109.47098 * 59.92948 * 1 2 3 28 28 H 1.08999 * 109.46965 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.50797 * 65.66899 * 4 2 1 30 30 H 1.09000 * 109.42951 * 305.39008 * 4 2 1 31 31 H 1.09001 * 109.46613 * 60.00647 * 8 6 5 32 32 H 1.09000 * 109.47374 * 300.00393 * 8 6 5 33 33 H 1.08998 * 109.58407 * 66.42891 * 13 5 4 34 34 H 1.08996 * 109.58299 * 186.70918 * 13 5 4 35 35 H 1.09000 * 109.49630 * 174.59147 * 14 13 5 36 36 H 1.09005 * 109.49537 * 294.68145 * 14 13 5 37 37 H 0.96994 * 120.00364 * 265.00003 * 17 15 14 38 38 H 0.96998 * 120.00051 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0416 -0.7190 -1.2471 5 7 3.5046 -0.8294 -1.1695 6 6 4.2811 -0.3861 -2.1780 7 8 3.7731 0.1050 -3.1637 8 6 5.7806 -0.5006 -2.0807 9 6 6.4191 0.0723 -3.3477 10 9 6.0619 1.4183 -3.4821 11 9 7.8111 -0.0345 -3.2576 12 9 5.9679 -0.6434 -4.4619 13 6 4.1053 -1.4267 0.0309 14 6 3.5709 -0.6948 1.2660 15 6 2.0409 -0.7228 1.2485 16 1 1.6583 -0.2241 2.1389 17 7 1.5784 -2.1129 1.2311 18 6 1.4469 -2.8053 2.4052 19 1 1.6846 -2.3268 3.3438 20 6 1.0093 -4.1225 2.3888 21 7 0.8834 -4.7882 3.5173 22 14 0.5989 -4.9503 0.7653 23 1 1.8151 -5.6085 0.2240 24 1 -0.4600 -5.9685 0.9825 25 1 0.1155 -3.9318 -0.2013 26 1 -0.3632 0.5127 0.8906 27 1 -0.3633 0.5149 -0.8893 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7646 -0.1500 -2.1346 30 1 1.6020 -1.7152 -1.2973 31 1 6.0587 -1.5493 -1.9756 32 1 6.1321 0.0574 -1.2129 33 1 3.8376 -2.4818 0.0870 34 1 5.1898 -1.3269 -0.0149 35 1 3.9336 -1.1893 2.1672 36 1 3.9161 0.3391 1.2539 37 1 1.3653 -2.5427 0.3881 38 1 0.5772 -5.7086 3.5058 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035944691.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:42 Heat of formation + Delta-G solvation = -197.835065 kcal Electronic energy + Delta-G solvation = -25117.888720 eV Core-core repulsion = 20965.726763 eV Total energy + Delta-G solvation = -4152.161957 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.07184 -48.59178 -48.53848 -41.46623 -39.28692 -36.01639 -34.66320 -33.27034 -32.59621 -31.45477 -27.83365 -26.74389 -25.06241 -24.61648 -23.04043 -21.25017 -19.97524 -19.85568 -19.55668 -19.38856 -18.38277 -17.80926 -16.83405 -16.67122 -16.46003 -15.97826 -15.52352 -15.41177 -15.35082 -15.10009 -14.95889 -14.76381 -14.71070 -14.66177 -14.46243 -14.36975 -13.71993 -13.46470 -13.30758 -13.20097 -12.95481 -12.83464 -12.65804 -12.43731 -12.04243 -11.97418 -11.93552 -11.67452 -11.22454 -11.10211 -10.86903 -9.72395 -9.22708 -7.97029 -5.27788 1.37703 1.38506 1.39437 1.46434 1.49849 1.98243 2.50250 2.71813 2.94696 3.06550 3.35637 3.56239 3.63144 3.82741 3.97569 4.00969 4.12737 4.20944 4.28722 4.34663 4.47002 4.62926 4.69386 4.79503 4.95280 4.99401 5.12658 5.15743 5.26601 5.29858 5.43569 5.58929 5.86219 6.25724 6.28692 6.91805 7.14272 7.91248 8.08839 9.24878 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.022384 B = 0.004453 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.581962 B = 6286.915539 C = 6579.045602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.101 4.101 3 H 0.092 0.908 4 C 0.119 3.881 5 N -0.596 5.596 6 C 0.515 3.485 7 O -0.571 6.571 8 C -0.188 4.188 9 C 0.469 3.531 10 F -0.187 7.187 11 F -0.178 7.178 12 F -0.190 7.190 13 C 0.108 3.892 14 C -0.144 4.144 15 C 0.174 3.826 16 H 0.049 0.951 17 N -0.742 5.742 18 C -0.211 4.211 19 H 0.063 0.937 20 C -0.058 4.058 21 N -0.985 5.985 22 Si 0.937 3.063 23 H -0.279 1.279 24 H -0.304 1.304 25 H -0.257 1.257 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.041 0.959 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.168 0.832 32 H 0.175 0.825 33 H 0.062 0.938 34 H 0.120 0.880 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.362 0.638 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.411 11.226 -11.254 19.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.121 4.121 3 H 0.110 0.890 4 C -0.004 4.004 5 N -0.328 5.328 6 C 0.303 3.697 7 O -0.451 6.451 8 C -0.227 4.227 9 C 0.415 3.585 10 F -0.169 7.169 11 F -0.159 7.159 12 F -0.172 7.172 13 C -0.014 4.014 14 C -0.184 4.184 15 C 0.066 3.934 16 H 0.067 0.933 17 N -0.386 5.386 18 C -0.342 4.342 19 H 0.081 0.919 20 C -0.250 4.250 21 N -0.636 5.636 22 Si 0.766 3.234 23 H -0.206 1.206 24 H -0.231 1.231 25 H -0.182 1.182 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.186 0.814 32 H 0.192 0.808 33 H 0.080 0.920 34 H 0.137 0.863 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.196 0.804 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.154 11.459 -11.578 19.743 hybrid contribution -0.568 -1.055 -0.652 1.364 sum 10.586 10.404 -12.230 19.232 Atomic orbital electron populations 1.21659 0.94111 1.01605 1.02122 1.21596 0.96616 0.99889 0.93969 0.88969 1.21502 0.79150 1.00486 0.99224 1.48081 1.06816 1.59489 1.18378 1.20280 0.89160 0.77700 0.82514 1.90780 1.75943 1.46296 1.32032 1.23119 0.92693 1.09535 0.97395 1.20060 0.76296 0.76067 0.86127 1.93192 1.91679 1.35478 1.96515 1.93208 1.30451 1.95869 1.96370 1.93192 1.89048 1.78104 1.56807 1.21924 0.99222 0.97421 0.82787 1.22376 0.97486 1.00938 0.97610 1.20454 0.92926 0.83922 0.96100 0.93300 1.42812 1.80763 1.10856 1.04208 1.19000 1.34534 0.93707 0.86945 0.91946 1.25276 1.03045 0.97794 0.98858 1.69853 1.55824 1.11080 1.26864 0.85687 0.77670 0.78621 0.81408 1.20582 1.23127 1.18210 0.92144 0.91439 0.94017 0.89357 0.92759 0.81428 0.80757 0.91964 0.86251 0.91290 0.89791 0.80416 0.93680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.05 71.98 0.65 -3.02 16 2 C -0.10 -2.65 2.66 -10.86 -0.03 -2.68 16 3 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 4 C 0.12 3.23 5.39 86.22 0.47 3.70 16 5 N -0.60 -14.24 2.98 -819.72 -2.44 -16.68 16 6 C 0.52 12.20 7.47 87.66 0.65 12.85 16 7 O -0.57 -18.09 14.25 -3.04 -0.04 -18.14 16 8 C -0.19 -2.71 4.10 29.85 0.12 -2.59 16 9 C 0.47 9.33 2.89 71.98 0.21 9.54 16 10 F -0.19 -4.51 16.40 44.97 0.74 -3.78 16 11 F -0.18 -3.14 17.32 44.97 0.78 -2.36 16 12 F -0.19 -4.76 16.40 44.97 0.74 -4.02 16 13 C 0.11 2.35 6.09 86.36 0.53 2.88 16 14 C -0.14 -3.57 5.78 30.67 0.18 -3.40 16 15 C 0.17 5.44 2.53 45.02 0.11 5.55 16 16 H 0.05 1.66 8.08 -2.39 -0.02 1.64 16 17 N -0.74 -29.84 3.44 -322.81 -1.11 -30.95 16 18 C -0.21 -10.79 10.41 84.03 0.87 -9.92 16 19 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 20 C -0.06 -3.23 5.50 84.86 0.47 -2.76 16 21 N -0.98 -60.41 13.97 21.65 0.30 -60.11 16 22 Si 0.94 43.40 27.73 68.60 1.90 45.30 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 24 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 25 H -0.26 -10.84 6.52 99.48 0.65 -10.19 16 26 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.04 1.31 7.54 -2.39 -0.02 1.29 16 29 H 0.09 2.46 7.01 -2.39 -0.02 2.44 16 30 H 0.05 1.64 6.64 -2.39 -0.02 1.63 16 31 H 0.17 1.48 7.94 -2.39 -0.02 1.47 16 32 H 0.17 1.29 7.70 -2.39 -0.02 1.27 16 33 H 0.06 1.69 7.74 -2.39 -0.02 1.67 16 34 H 0.12 1.52 5.93 -2.39 -0.01 1.51 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.36 14.51 3.80 -92.71 -0.35 14.16 16 38 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -68.79 314.53 5.77 -63.02 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.68 Total: 17.56 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 4.23 Total: 10.15 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -3.25 Total: -107.73 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.04 Total: -18.14 kcal Atomic # 9 Polarization: -12.42 SS G_CDS: 2.25 Total: -10.16 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.90 Total: 45.30 kcal Total: -68.79 5.77 -63.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035944691.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.814 kcal (2) G-P(sol) polarization free energy of solvation -68.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds