Wall clock time and date at job start Tue Mar 31 2020 07:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.49822 * 2 1 4 4 C 1.53626 * 109.46022 * 120.20469 * 2 1 3 5 5 N 1.46924 * 108.54638 * 174.73808 * 4 2 1 6 6 C 1.34777 * 120.62960 * 126.36755 * 5 4 2 7 7 O 1.21283 * 119.99665 * 359.72547 * 6 5 4 8 8 C 1.50697 * 120.00075 * 179.72007 * 6 5 4 9 9 C 1.53006 * 109.47239 * 180.02562 * 8 6 5 10 10 F 1.39900 * 109.46764 * 60.00143 * 9 8 6 11 11 F 1.39897 * 109.47129 * 180.02562 * 9 8 6 12 12 F 1.39903 * 109.46814 * 300.00614 * 9 8 6 13 13 C 1.46929 * 118.74050 * 306.10103 * 5 4 2 14 14 C 1.53191 * 108.77730 * 53.85649 * 13 5 4 15 15 C 1.53038 * 109.31121 * 305.36864 * 14 13 5 16 16 H 1.09003 * 109.46150 * 301.34211 * 15 14 13 17 17 N 1.46498 * 109.46011 * 181.38627 * 15 14 13 18 18 C 1.36943 * 120.00171 * 84.99936 * 17 15 14 19 19 H 1.07994 * 119.99747 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99957 * 180.02562 * 18 17 15 21 21 N 1.31616 * 119.99930 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99878 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46883 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47388 * 119.99659 * 22 20 18 25 25 H 1.48503 * 109.46843 * 239.99504 * 22 20 18 26 26 H 1.08997 * 109.47314 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47337 * 300.06609 * 1 2 3 28 28 H 1.09003 * 109.46988 * 60.06426 * 1 2 3 29 29 H 1.09005 * 109.73614 * 55.00407 * 4 2 1 30 30 H 1.09001 * 109.66448 * 294.43661 * 4 2 1 31 31 H 1.09001 * 109.46613 * 60.00647 * 8 6 5 32 32 H 1.09000 * 109.47374 * 300.00393 * 8 6 5 33 33 H 1.09000 * 109.58622 * 173.64473 * 13 5 4 34 34 H 1.08998 * 109.58306 * 293.92513 * 13 5 4 35 35 H 1.08999 * 109.49863 * 65.31413 * 14 13 5 36 36 H 1.08993 * 109.49922 * 185.41802 * 14 13 5 37 37 H 0.97001 * 120.00240 * 264.99441 * 17 15 14 38 38 H 0.97006 * 120.00204 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0417 -0.7287 1.2518 5 7 3.5053 -0.8283 1.1690 6 6 4.2818 -0.3853 2.1775 7 8 3.7738 0.1058 3.1633 8 6 5.7813 -0.5002 2.0804 9 6 6.4198 0.0714 3.3479 10 9 5.9684 -0.6453 4.4613 11 9 7.8118 -0.0347 3.2574 12 9 6.0629 1.4173 3.4836 13 6 4.1059 -1.4255 -0.0316 14 6 3.5709 -0.6940 -1.2666 15 6 2.0409 -0.7227 -1.2485 16 1 1.6972 -1.7571 -1.2355 17 7 1.5260 -0.0527 -2.4453 18 6 1.3945 -0.7494 -3.6169 19 1 1.6708 -1.7925 -3.6588 20 6 0.9071 -0.1144 -4.7510 21 7 0.5708 1.1571 -4.7000 22 14 0.7271 -1.0648 -6.3490 23 1 1.1698 -2.4673 -6.1433 24 1 -0.6953 -1.0517 -6.7753 25 1 1.5643 -0.4308 -7.3989 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5149 0.8894 28 1 -0.3633 0.5129 -0.8906 29 1 1.6096 -1.7283 1.2984 30 1 1.7636 -0.1663 2.1431 31 1 6.1329 0.0579 1.2126 32 1 6.0593 -1.5488 1.9750 33 1 5.1902 -1.3229 0.0127 34 1 3.8408 -2.4813 -0.0862 35 1 3.9154 0.3401 -1.2547 36 1 3.9334 -1.1884 -2.1678 37 1 1.2780 0.8843 -2.4078 38 1 0.2299 1.6008 -5.4924 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035944697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:48 Heat of formation + Delta-G solvation = -185.051911 kcal Electronic energy + Delta-G solvation = -24598.116807 eV Core-core repulsion = 20446.509169 eV Total energy + Delta-G solvation = -4151.607638 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.20298 -47.74905 -47.61022 -40.30655 -37.83600 -34.78916 -33.18276 -31.86154 -31.50021 -29.40706 -26.66427 -25.22698 -23.89672 -22.84895 -21.76239 -20.19369 -19.36214 -18.69907 -18.65503 -17.50509 -17.14991 -16.83745 -15.66815 -15.62829 -15.01147 -14.58814 -14.49049 -14.21466 -14.07627 -13.84542 -13.81021 -13.78038 -13.70677 -13.41283 -13.39288 -12.70313 -12.51247 -12.38361 -12.13411 -11.78017 -11.68738 -11.24195 -11.01481 -10.89218 -10.74128 -10.49628 -10.22220 -10.07102 -9.81506 -9.70461 -8.98309 -8.66654 -7.03947 -5.84078 -3.13318 2.33363 2.36953 2.88920 3.37555 3.43205 3.45774 3.52456 3.81396 3.85853 4.40817 4.51431 4.76869 4.79061 4.91850 5.14199 5.15882 5.22829 5.43418 5.46053 5.60063 5.67947 5.85492 5.98822 6.04668 6.19555 6.25618 6.35393 6.40249 6.51630 6.71312 6.84256 6.95556 7.24037 7.62640 7.90311 8.33890 9.45630 10.02394 10.37000 11.38319 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.028954 B = 0.003489 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.806694 B = 8024.305411 C = 8461.288434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.070 0.930 4 C 0.120 3.880 5 N -0.599 5.599 6 C 0.518 3.482 7 O -0.530 6.530 8 C -0.196 4.196 9 C 0.472 3.528 10 F -0.174 7.174 11 F -0.184 7.184 12 F -0.173 7.173 13 C 0.103 3.897 14 C -0.153 4.153 15 C 0.183 3.817 16 H 0.049 0.951 17 N -0.720 5.720 18 C -0.241 4.241 19 H 0.071 0.929 20 C -0.011 4.011 21 N -0.931 5.931 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 H 0.051 0.949 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.384 0.616 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.470 -5.174 13.696 17.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.089 0.911 4 C -0.002 4.002 5 N -0.331 5.331 6 C 0.304 3.696 7 O -0.407 6.407 8 C -0.237 4.237 9 C 0.418 3.582 10 F -0.156 7.156 11 F -0.166 7.166 12 F -0.154 7.154 13 C -0.020 4.020 14 C -0.195 4.195 15 C 0.073 3.927 16 H 0.067 0.933 17 N -0.361 5.361 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.207 4.207 21 N -0.579 5.579 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.109 0.891 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.218 0.782 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.174 -5.028 14.086 18.088 hybrid contribution 0.088 -0.115 -1.008 1.018 sum 10.262 -5.142 13.078 17.401 Atomic orbital electron populations 1.21659 0.93973 1.01827 1.01965 1.21833 0.96726 1.00041 0.94405 0.91123 1.21879 0.77554 1.01111 0.99640 1.48080 1.07503 1.59866 1.17698 1.19690 0.87581 0.78854 0.83467 1.90797 1.74822 1.44349 1.30740 1.23030 0.96176 1.07039 0.97478 1.19753 0.75928 0.76771 0.85784 1.93215 1.88796 1.77795 1.55773 1.93194 1.31000 1.95972 1.96418 1.93230 1.91501 1.34289 1.96386 1.21982 0.97430 0.97842 0.84788 1.22714 1.00620 1.00450 0.95672 1.20197 0.90244 0.95799 0.86499 0.93316 1.42417 1.76433 1.11442 1.05781 1.19252 1.36103 0.94125 0.87682 0.91153 1.24732 1.01933 0.95994 0.98076 1.69666 1.49846 1.09499 1.28872 0.86159 0.77368 0.78858 0.84017 1.20578 1.21875 1.21908 0.93005 0.93737 0.90682 0.91192 0.89108 0.84294 0.84495 0.90563 0.90884 0.92029 0.90299 0.78176 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.03 37.15 0.34 -1.78 16 2 C -0.11 -1.69 2.47 -90.28 -0.22 -1.92 16 3 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 4 C 0.12 1.60 5.75 -3.49 -0.02 1.58 16 5 N -0.60 -7.39 2.97 -172.50 -0.51 -7.91 16 6 C 0.52 6.61 7.47 -10.99 -0.08 6.53 16 7 O -0.53 -8.70 14.25 5.55 0.08 -8.62 16 8 C -0.20 -1.73 4.10 -27.88 -0.11 -1.85 16 9 C 0.47 5.20 2.89 37.16 0.11 5.31 16 10 F -0.17 -2.21 16.40 2.25 0.04 -2.17 16 11 F -0.18 -1.85 17.32 2.25 0.04 -1.82 16 12 F -0.17 -2.30 16.40 2.25 0.04 -2.26 16 13 C 0.10 1.10 6.34 -3.71 -0.02 1.08 16 14 C -0.15 -2.27 5.66 -26.61 -0.15 -2.42 16 15 C 0.18 3.21 2.19 -67.89 -0.15 3.06 16 16 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 17 N -0.72 -16.51 4.41 -53.39 -0.24 -16.75 16 18 C -0.24 -6.21 9.93 -15.06 -0.15 -6.36 16 19 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 20 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 21 N -0.93 -26.99 13.06 55.49 0.72 -26.27 16 22 Si 0.90 21.44 29.55 -169.99 -5.02 16.42 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 1.38 7.36 -51.93 -0.38 1.00 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.28 7.00 -51.93 -0.36 0.92 16 31 H 0.14 0.93 7.69 -51.93 -0.40 0.54 16 32 H 0.14 0.78 7.94 -51.93 -0.41 0.37 16 33 H 0.08 0.59 5.93 -51.93 -0.31 0.28 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.38 9.60 7.50 -40.82 -0.31 9.29 16 38 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 321.63 15.07 4.85 4.85 Total: -1.00 -30.79 321.63 -5.67 -36.46 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.10 Total: 5.22 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -0.56 Total: 2.84 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.02 Total: -50.92 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.08 Total: -8.62 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 0.11 Total: -6.25 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.79 -5.67 -36.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035944697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.591 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds