Wall clock time and date at job start Tue Mar 31 2020 07:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.49822 * 2 1 4 4 C 1.53626 * 109.46022 * 120.20469 * 2 1 3 5 5 N 1.46924 * 108.54638 * 174.73808 * 4 2 1 6 6 C 1.34777 * 120.62960 * 126.36755 * 5 4 2 7 7 O 1.21283 * 119.99665 * 359.72547 * 6 5 4 8 8 C 1.50697 * 120.00075 * 179.72007 * 6 5 4 9 9 C 1.53006 * 109.47239 * 180.02562 * 8 6 5 10 10 F 1.39900 * 109.46764 * 60.00143 * 9 8 6 11 11 F 1.39897 * 109.47129 * 180.02562 * 9 8 6 12 12 F 1.39903 * 109.46814 * 300.00614 * 9 8 6 13 13 C 1.46929 * 118.74050 * 306.10103 * 5 4 2 14 14 C 1.53191 * 108.77730 * 53.85649 * 13 5 4 15 15 C 1.53038 * 109.31121 * 305.36864 * 14 13 5 16 16 H 1.09003 * 109.46150 * 301.34211 * 15 14 13 17 17 N 1.46498 * 109.46011 * 181.38627 * 15 14 13 18 18 C 1.36943 * 120.00171 * 84.99936 * 17 15 14 19 19 H 1.07994 * 119.99747 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99957 * 180.02562 * 18 17 15 21 21 N 1.31616 * 119.99930 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99878 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46883 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47388 * 119.99659 * 22 20 18 25 25 H 1.48503 * 109.46843 * 239.99504 * 22 20 18 26 26 H 1.08997 * 109.47314 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47337 * 300.06609 * 1 2 3 28 28 H 1.09003 * 109.46988 * 60.06426 * 1 2 3 29 29 H 1.09005 * 109.73614 * 55.00407 * 4 2 1 30 30 H 1.09001 * 109.66448 * 294.43661 * 4 2 1 31 31 H 1.09001 * 109.46613 * 60.00647 * 8 6 5 32 32 H 1.09000 * 109.47374 * 300.00393 * 8 6 5 33 33 H 1.09000 * 109.58622 * 173.64473 * 13 5 4 34 34 H 1.08998 * 109.58306 * 293.92513 * 13 5 4 35 35 H 1.08999 * 109.49863 * 65.31413 * 14 13 5 36 36 H 1.08993 * 109.49922 * 185.41802 * 14 13 5 37 37 H 0.97001 * 120.00240 * 264.99441 * 17 15 14 38 38 H 0.97006 * 120.00204 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0417 -0.7287 1.2518 5 7 3.5053 -0.8283 1.1690 6 6 4.2818 -0.3853 2.1775 7 8 3.7738 0.1058 3.1633 8 6 5.7813 -0.5002 2.0804 9 6 6.4198 0.0714 3.3479 10 9 5.9684 -0.6453 4.4613 11 9 7.8118 -0.0347 3.2574 12 9 6.0629 1.4173 3.4836 13 6 4.1059 -1.4255 -0.0316 14 6 3.5709 -0.6940 -1.2666 15 6 2.0409 -0.7227 -1.2485 16 1 1.6972 -1.7571 -1.2355 17 7 1.5260 -0.0527 -2.4453 18 6 1.3945 -0.7494 -3.6169 19 1 1.6708 -1.7925 -3.6588 20 6 0.9071 -0.1144 -4.7510 21 7 0.5708 1.1571 -4.7000 22 14 0.7271 -1.0648 -6.3490 23 1 1.1698 -2.4673 -6.1433 24 1 -0.6953 -1.0517 -6.7753 25 1 1.5643 -0.4308 -7.3989 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5149 0.8894 28 1 -0.3633 0.5129 -0.8906 29 1 1.6096 -1.7283 1.2984 30 1 1.7636 -0.1663 2.1431 31 1 6.1329 0.0579 1.2126 32 1 6.0593 -1.5488 1.9750 33 1 5.1902 -1.3229 0.0127 34 1 3.8408 -2.4813 -0.0862 35 1 3.9154 0.3401 -1.2547 36 1 3.9334 -1.1884 -2.1678 37 1 1.2780 0.8843 -2.4078 38 1 0.2299 1.6008 -5.4924 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035944697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:48 Heat of formation + Delta-G solvation = -204.534648 kcal Electronic energy + Delta-G solvation = -24598.961642 eV Core-core repulsion = 20446.509169 eV Total energy + Delta-G solvation = -4152.452473 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.06163 -48.58230 -48.53036 -41.34762 -39.07315 -36.21428 -34.60412 -33.17142 -32.56220 -30.99764 -27.79424 -26.73968 -25.04179 -24.13724 -23.06362 -21.37585 -20.45553 -19.60379 -19.53655 -19.00428 -18.38284 -17.82487 -16.72783 -16.63599 -16.61268 -15.67898 -15.49651 -15.43311 -15.36810 -14.98334 -14.93982 -14.74732 -14.70700 -14.65027 -14.35698 -14.10744 -13.64573 -13.37925 -13.18686 -13.06830 -12.87623 -12.81424 -12.68428 -12.43831 -12.06683 -12.02931 -11.83314 -11.65495 -11.14217 -11.10852 -10.82664 -9.72665 -8.94381 -7.89638 -5.16949 1.40344 1.50027 1.50869 1.52780 1.59974 2.00587 2.59569 2.73143 2.96789 3.07733 3.44597 3.58168 3.80541 3.85748 4.02891 4.10544 4.14884 4.23546 4.33429 4.42492 4.51952 4.68320 4.79924 4.81852 4.85806 4.99814 5.03143 5.18726 5.32236 5.42463 5.51712 5.58044 5.65726 6.27468 6.32349 6.94510 7.38744 8.15623 8.37662 9.34237 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.028954 B = 0.003489 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.806694 B = 8024.305411 C = 8461.288434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.100 4.100 3 H 0.052 0.948 4 C 0.127 3.873 5 N -0.600 5.600 6 C 0.514 3.486 7 O -0.573 6.573 8 C -0.187 4.187 9 C 0.467 3.533 10 F -0.187 7.187 11 F -0.178 7.178 12 F -0.191 7.191 13 C 0.109 3.891 14 C -0.146 4.146 15 C 0.176 3.824 16 H 0.050 0.950 17 N -0.733 5.733 18 C -0.227 4.227 19 H 0.080 0.920 20 C -0.077 4.077 21 N -0.972 5.972 22 Si 0.966 3.034 23 H -0.263 1.263 24 H -0.300 1.300 25 H -0.298 1.298 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.039 0.961 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.167 0.833 32 H 0.179 0.821 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.370 0.630 38 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.237 -7.397 14.189 20.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.120 4.120 3 H 0.070 0.930 4 C 0.004 3.996 5 N -0.331 5.331 6 C 0.302 3.698 7 O -0.452 6.452 8 C -0.227 4.227 9 C 0.413 3.587 10 F -0.169 7.169 11 F -0.159 7.159 12 F -0.173 7.173 13 C -0.013 4.013 14 C -0.186 4.186 15 C 0.068 3.932 16 H 0.068 0.932 17 N -0.372 5.372 18 C -0.359 4.359 19 H 0.098 0.902 20 C -0.269 4.269 21 N -0.623 5.623 22 Si 0.796 3.204 23 H -0.187 1.187 24 H -0.228 1.228 25 H -0.226 1.226 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.185 0.815 32 H 0.196 0.804 33 H 0.136 0.864 34 H 0.112 0.888 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.201 0.799 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 11.983 -7.309 14.606 20.257 hybrid contribution -0.449 0.569 -1.063 1.287 sum 11.534 -6.740 13.543 19.023 Atomic orbital electron populations 1.21580 0.94241 1.02021 1.01065 1.21693 0.96508 0.99106 0.94727 0.92952 1.21709 0.78754 1.01481 0.97618 1.48132 1.06993 1.59744 1.18225 1.20307 0.89194 0.77631 0.82669 1.90788 1.75974 1.46053 1.32435 1.23127 0.92686 1.09896 0.96989 1.20111 0.76318 0.75972 0.86307 1.93190 1.89001 1.77936 1.56761 1.93207 1.30476 1.95863 1.96376 1.93195 1.91720 1.35848 1.96526 1.22084 0.99590 0.97918 0.81714 1.22495 0.97982 1.00358 0.97808 1.20477 0.92160 0.95348 0.85235 0.93199 1.42627 1.76920 1.10856 1.06825 1.19650 1.33436 0.94458 0.88401 0.90195 1.25465 1.03291 0.96845 1.01262 1.69825 1.52191 1.11180 1.29148 0.85175 0.76464 0.78473 0.80286 1.18669 1.22778 1.22593 0.92210 0.91939 0.94225 0.89430 0.89933 0.81527 0.80405 0.86355 0.88798 0.93373 0.91060 0.79892 0.94367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 9.03 71.98 0.65 -3.41 16 2 C -0.10 -3.03 2.47 -10.57 -0.03 -3.05 16 3 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 4 C 0.13 3.14 5.75 86.51 0.50 3.64 16 5 N -0.60 -12.90 2.97 -818.06 -2.43 -15.32 16 6 C 0.51 11.65 7.47 87.66 0.65 12.31 16 7 O -0.57 -18.05 14.25 -3.04 -0.04 -18.10 16 8 C -0.19 -2.52 4.10 29.85 0.12 -2.39 16 9 C 0.47 9.16 2.89 71.98 0.21 9.37 16 10 F -0.19 -4.44 16.40 44.97 0.74 -3.70 16 11 F -0.18 -3.09 17.32 44.97 0.78 -2.31 16 12 F -0.19 -4.87 16.40 44.97 0.74 -4.13 16 13 C 0.11 1.86 6.34 86.36 0.55 2.40 16 14 C -0.15 -3.98 5.66 30.67 0.17 -3.81 16 15 C 0.18 5.98 2.19 45.02 0.10 6.08 16 16 H 0.05 1.70 8.08 -2.39 -0.02 1.68 16 17 N -0.73 -33.89 4.41 -322.82 -1.42 -35.32 16 18 C -0.23 -11.68 9.93 84.03 0.83 -10.85 16 19 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 20 C -0.08 -4.21 5.50 84.86 0.47 -3.74 16 21 N -0.97 -57.96 13.06 21.65 0.28 -57.68 16 22 Si 0.97 44.34 29.55 68.60 2.03 46.37 16 23 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 24 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 25 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 26 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.04 1.50 7.36 -2.39 -0.02 1.48 16 29 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.08 2.23 7.00 -2.39 -0.02 2.22 16 31 H 0.17 1.38 7.69 -2.39 -0.02 1.36 16 32 H 0.18 0.96 7.94 -2.39 -0.02 0.94 16 33 H 0.12 1.10 5.93 -2.39 -0.01 1.08 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.37 19.09 7.50 -92.71 -0.70 18.40 16 38 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 Total: -1.00 -69.38 321.63 5.29 -64.09 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.39 Total: 19.55 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 4.23 Total: 6.54 kcal Atomic # 7 Polarization: -104.75 SS G_CDS: -3.57 Total: -108.32 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.04 Total: -18.10 kcal Atomic # 9 Polarization: -12.40 SS G_CDS: 2.25 Total: -10.14 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -69.38 5.29 -64.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035944697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.440 kcal (2) G-P(sol) polarization free energy of solvation -69.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds