Wall clock time and date at job start Tue Mar 31 2020 07:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.58138 * 2 1 4 4 C 1.53159 * 109.59361 * 239.56511 * 2 1 3 5 5 C 1.53045 * 109.32678 * 185.57372 * 4 2 1 6 6 H 1.09000 * 109.45820 * 181.38712 * 5 4 2 7 7 N 1.46496 * 109.45738 * 301.35204 * 5 4 2 8 8 C 1.36944 * 120.00082 * 205.02689 * 7 5 4 9 9 H 1.07995 * 119.99786 * 0.02562 * 8 7 5 10 10 C 1.38817 * 119.99918 * 180.02562 * 8 7 5 11 11 N 1.31612 * 119.99993 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 119.99699 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.47518 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47214 * 240.00169 * 12 10 8 15 15 H 1.48494 * 109.47323 * 120.00246 * 12 10 8 16 16 C 1.53039 * 109.52949 * 61.36941 * 5 4 2 17 17 C 1.53190 * 109.31190 * 298.64131 * 16 5 4 18 18 N 1.46923 * 108.77490 * 54.63400 * 17 16 5 19 19 C 1.34777 * 120.63071 * 126.37165 * 18 17 16 20 20 O 1.21279 * 120.00173 * 174.21799 * 19 18 17 21 21 C 1.50704 * 119.99685 * 354.21278 * 19 18 17 22 22 C 1.53005 * 109.46892 * 180.02562 * 21 19 18 23 23 F 1.39895 * 109.47459 * 59.99899 * 22 21 19 24 24 F 1.39895 * 109.46975 * 180.02562 * 22 21 19 25 25 F 1.39903 * 109.46908 * 299.99987 * 22 21 19 26 26 H 1.08993 * 109.47591 * 305.50895 * 1 2 3 27 27 H 1.09000 * 109.46718 * 65.50950 * 1 2 3 28 28 H 1.09002 * 109.46939 * 185.50456 * 1 2 3 29 29 H 1.08990 * 109.48442 * 65.62074 * 4 2 1 30 30 H 1.09002 * 109.50065 * 305.53043 * 4 2 1 31 31 H 0.97005 * 120.00289 * 25.03300 * 7 5 4 32 32 H 0.96999 * 120.00306 * 359.97438 * 11 10 8 33 33 H 1.08992 * 109.49670 * 58.59394 * 16 5 4 34 34 H 1.09004 * 109.49764 * 178.65789 * 16 5 4 35 35 H 1.08996 * 109.58721 * 174.42307 * 17 16 5 36 36 H 1.09003 * 109.58921 * 294.70722 * 17 16 5 37 37 H 1.09001 * 109.46801 * 299.99840 * 21 19 18 38 38 H 1.08996 * 109.47551 * 60.00280 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7309 -1.2441 5 6 3.5676 -0.8494 -1.1689 6 1 3.9377 -1.3475 -2.0650 7 7 4.1570 0.4885 -1.0754 8 6 5.4412 0.7021 -1.5004 9 1 6.0192 -0.1156 -1.9048 10 6 5.9999 1.9698 -1.4114 11 7 5.2956 2.9662 -0.9181 12 14 7.7513 2.2613 -1.9918 13 1 8.3229 0.9883 -2.4998 14 1 8.5731 2.7543 -0.8574 15 1 7.7506 3.2729 -3.0789 16 6 3.9569 -1.6655 0.0658 17 6 3.4650 -0.9451 1.3251 18 7 2.0225 -0.6979 1.1954 19 6 1.1673 -1.1041 2.1546 20 8 -0.0057 -0.8032 2.0882 21 6 1.6686 -1.9321 3.3097 22 6 0.5041 -2.2572 4.2474 23 9 -0.4717 -2.9752 3.5477 24 9 0.9695 -3.0254 5.3199 25 9 -0.0503 -1.0677 4.7322 26 1 -0.3634 0.5968 0.8365 27 1 -0.3633 0.4260 -0.9352 28 1 -0.3633 -1.0230 0.0986 29 1 1.7659 -0.1695 -2.1361 30 1 1.6030 -1.7270 -1.2887 31 1 3.6378 1.2231 -0.7124 32 1 4.3860 2.8149 -0.6170 33 1 3.4984 -2.6527 0.0088 34 1 5.0412 -1.7698 0.1059 35 1 3.6517 -1.5688 2.1993 36 1 3.9920 0.0029 1.4332 37 1 2.1000 -2.8591 2.9318 38 1 2.4291 -1.3730 3.8546 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044504034.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:14 Heat of formation + Delta-G solvation = -166.730795 kcal Electronic energy + Delta-G solvation = -25253.712927 eV Core-core repulsion = 21102.899752 eV Total energy + Delta-G solvation = -4150.813175 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.15588 -47.70255 -47.56206 -40.54550 -37.73238 -34.55435 -33.46719 -32.17259 -31.13249 -28.91279 -27.07484 -24.71211 -23.92907 -23.48949 -21.92685 -20.35493 -19.04445 -18.63073 -18.28826 -17.44555 -17.31866 -16.54969 -16.02712 -15.42795 -14.94866 -14.55848 -14.43292 -14.25402 -14.03698 -13.84515 -13.77664 -13.74079 -13.68283 -13.62861 -13.30813 -13.06288 -12.54353 -12.19271 -12.13004 -11.94161 -11.64974 -11.39112 -10.91174 -10.81307 -10.64848 -10.41312 -10.30721 -10.09221 -9.26021 -9.14451 -9.02360 -8.41089 -7.13859 -6.18137 -3.19632 2.42958 2.45774 2.97677 3.46537 3.52320 3.58958 3.61541 3.89965 3.92131 4.49543 4.59449 4.84866 4.87797 5.00355 5.11874 5.19353 5.30752 5.46012 5.54195 5.56846 5.69140 5.82421 5.90720 5.99015 6.12577 6.22688 6.31059 6.39404 6.56852 6.57448 6.65324 6.85465 7.42659 7.73888 8.05904 8.66685 9.12511 9.99023 10.13738 11.29594 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.025908 B = 0.004067 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.491417 B = 6883.246760 C = 7219.355748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.147 3.853 3 H 0.078 0.922 4 C -0.135 4.135 5 C 0.178 3.822 6 H 0.053 0.947 7 N -0.733 5.733 8 C -0.333 4.333 9 H 0.065 0.935 10 C -0.043 4.043 11 N -0.943 5.943 12 Si 1.084 2.916 13 H -0.295 1.295 14 H -0.293 1.293 15 H -0.293 1.293 16 C -0.149 4.149 17 C 0.110 3.890 18 N -0.592 5.592 19 C 0.517 3.483 20 O -0.524 6.524 21 C -0.199 4.199 22 C 0.473 3.527 23 F -0.174 7.174 24 F -0.185 7.185 25 F -0.173 7.173 26 H 0.077 0.923 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.366 0.634 32 H 0.255 0.745 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.135 0.865 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.015 -11.965 7.717 15.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.045 3.955 3 H 0.096 0.904 4 C -0.174 4.174 5 C 0.068 3.932 6 H 0.071 0.929 7 N -0.377 5.377 8 C -0.464 4.464 9 H 0.083 0.917 10 C -0.240 4.240 11 N -0.588 5.588 12 Si 0.915 3.085 13 H -0.221 1.221 14 H -0.221 1.221 15 H -0.220 1.220 16 C -0.190 4.190 17 C -0.012 4.012 18 N -0.325 5.325 19 C 0.303 3.697 20 O -0.402 6.402 21 C -0.240 4.240 22 C 0.418 3.582 23 F -0.156 7.156 24 F -0.167 7.167 25 F -0.155 7.155 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.201 0.799 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.153 0.847 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.313 -10.817 7.400 14.547 hybrid contribution -1.173 -1.116 0.444 1.679 sum -7.486 -11.932 7.843 16.123 Atomic orbital electron populations 1.22214 0.92887 1.03250 1.01144 1.21278 0.95104 0.95793 0.83305 0.90434 1.22271 0.97422 1.00449 0.97245 1.20129 0.90214 0.87740 0.95110 0.92879 1.42530 1.14112 1.04702 1.76376 1.20092 0.90435 0.97041 1.38812 0.91652 1.25730 1.06063 0.91541 1.00711 1.70836 1.10989 1.32438 1.44556 0.83169 0.74416 0.74801 0.76136 1.22142 1.22058 1.22035 1.22508 1.01692 0.97951 0.96897 1.21815 0.78922 1.02004 0.98470 1.48103 1.07707 1.56713 1.19932 1.19670 0.86356 0.80615 0.83050 1.90841 1.16647 1.56485 1.76209 1.23088 0.97918 1.05661 0.97314 1.19759 0.83962 0.74676 0.79765 1.93211 1.65324 1.78488 1.78547 1.93188 1.88581 1.76439 1.58491 1.93222 1.86980 1.46461 1.88812 0.90445 0.93646 0.91984 0.90605 0.91817 0.79918 0.93407 0.93046 0.90511 0.91078 0.89551 0.84660 0.84615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 7.61 37.16 0.28 -1.78 16 2 C 0.15 2.30 3.19 -67.62 -0.22 2.09 16 3 H 0.08 1.37 6.65 -51.93 -0.35 1.02 16 4 C -0.13 -2.08 5.07 -26.63 -0.13 -2.22 16 5 C 0.18 3.17 3.10 -67.89 -0.21 2.96 16 6 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 7 N -0.73 -16.46 4.31 -53.38 -0.23 -16.69 16 8 C -0.33 -8.63 9.93 -15.05 -0.15 -8.77 16 9 H 0.07 1.68 7.83 -52.49 -0.41 1.27 16 10 C -0.04 -1.17 5.50 -17.43 -0.10 -1.26 16 11 N -0.94 -27.83 13.70 55.49 0.76 -27.07 16 12 Si 1.08 24.86 29.92 -169.99 -5.09 19.78 16 13 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 C -0.15 -2.23 5.78 -26.61 -0.15 -2.39 16 17 C 0.11 1.52 6.09 -3.71 -0.02 1.50 16 18 N -0.59 -8.47 2.97 -165.24 -0.49 -8.97 16 19 C 0.52 7.17 7.27 -10.98 -0.08 7.09 16 20 O -0.52 -8.65 10.40 5.56 0.06 -8.59 16 21 C -0.20 -1.99 4.11 -27.88 -0.11 -2.11 16 22 C 0.47 5.55 2.89 37.16 0.11 5.66 16 23 F -0.17 -2.33 16.40 2.25 0.04 -2.29 16 24 F -0.19 -2.01 17.32 2.25 0.04 -1.97 16 25 F -0.17 -2.38 16.40 2.25 0.04 -2.35 16 26 H 0.08 1.26 6.54 -51.93 -0.34 0.92 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.96 6.96 -51.93 -0.36 0.60 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.37 8.60 4.90 -40.82 -0.20 8.40 16 32 H 0.25 7.40 6.77 -40.82 -0.28 7.12 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.07 0.73 5.93 -51.93 -0.31 0.42 16 36 H 0.09 1.46 7.74 -51.93 -0.40 1.05 16 37 H 0.14 1.01 7.93 -51.93 -0.41 0.60 16 38 H 0.14 1.07 7.71 -51.93 -0.40 0.67 16 LS Contribution 311.00 15.07 4.69 4.69 Total: -1.00 -30.39 311.00 -5.76 -36.15 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -4.78 Total: 6.53 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -0.79 Total: 0.77 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: 0.04 Total: -52.72 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.06 Total: -8.59 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 0.11 Total: -6.61 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.09 Total: 19.78 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.39 -5.76 -36.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044504034.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.582 kcal (2) G-P(sol) polarization free energy of solvation -30.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds