Wall clock time and date at job start Tue Mar 31 2020 07:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.58138 * 2 1 4 4 C 1.53159 * 109.59361 * 239.56511 * 2 1 3 5 5 C 1.53045 * 109.32678 * 185.57372 * 4 2 1 6 6 H 1.09000 * 109.45820 * 181.38712 * 5 4 2 7 7 N 1.46496 * 109.45738 * 301.35204 * 5 4 2 8 8 C 1.36944 * 120.00082 * 205.02689 * 7 5 4 9 9 H 1.07995 * 119.99786 * 0.02562 * 8 7 5 10 10 C 1.38817 * 119.99918 * 180.02562 * 8 7 5 11 11 N 1.31612 * 119.99993 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 119.99699 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.47518 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47214 * 240.00169 * 12 10 8 15 15 H 1.48494 * 109.47323 * 120.00246 * 12 10 8 16 16 C 1.53039 * 109.52949 * 61.36941 * 5 4 2 17 17 C 1.53190 * 109.31190 * 298.64131 * 16 5 4 18 18 N 1.46923 * 108.77490 * 54.63400 * 17 16 5 19 19 C 1.34777 * 120.63071 * 126.37165 * 18 17 16 20 20 O 1.21279 * 120.00173 * 174.21799 * 19 18 17 21 21 C 1.50704 * 119.99685 * 354.21278 * 19 18 17 22 22 C 1.53005 * 109.46892 * 180.02562 * 21 19 18 23 23 F 1.39895 * 109.47459 * 59.99899 * 22 21 19 24 24 F 1.39895 * 109.46975 * 180.02562 * 22 21 19 25 25 F 1.39903 * 109.46908 * 299.99987 * 22 21 19 26 26 H 1.08993 * 109.47591 * 305.50895 * 1 2 3 27 27 H 1.09000 * 109.46718 * 65.50950 * 1 2 3 28 28 H 1.09002 * 109.46939 * 185.50456 * 1 2 3 29 29 H 1.08990 * 109.48442 * 65.62074 * 4 2 1 30 30 H 1.09002 * 109.50065 * 305.53043 * 4 2 1 31 31 H 0.97005 * 120.00289 * 25.03300 * 7 5 4 32 32 H 0.96999 * 120.00306 * 359.97438 * 11 10 8 33 33 H 1.08992 * 109.49670 * 58.59394 * 16 5 4 34 34 H 1.09004 * 109.49764 * 178.65789 * 16 5 4 35 35 H 1.08996 * 109.58721 * 174.42307 * 17 16 5 36 36 H 1.09003 * 109.58921 * 294.70722 * 17 16 5 37 37 H 1.09001 * 109.46801 * 299.99840 * 21 19 18 38 38 H 1.08996 * 109.47551 * 60.00280 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7309 -1.2441 5 6 3.5676 -0.8494 -1.1689 6 1 3.9377 -1.3475 -2.0650 7 7 4.1570 0.4885 -1.0754 8 6 5.4412 0.7021 -1.5004 9 1 6.0192 -0.1156 -1.9048 10 6 5.9999 1.9698 -1.4114 11 7 5.2956 2.9662 -0.9181 12 14 7.7513 2.2613 -1.9918 13 1 8.3229 0.9883 -2.4998 14 1 8.5731 2.7543 -0.8574 15 1 7.7506 3.2729 -3.0789 16 6 3.9569 -1.6655 0.0658 17 6 3.4650 -0.9451 1.3251 18 7 2.0225 -0.6979 1.1954 19 6 1.1673 -1.1041 2.1546 20 8 -0.0057 -0.8032 2.0882 21 6 1.6686 -1.9321 3.3097 22 6 0.5041 -2.2572 4.2474 23 9 -0.4717 -2.9752 3.5477 24 9 0.9695 -3.0254 5.3199 25 9 -0.0503 -1.0677 4.7322 26 1 -0.3634 0.5968 0.8365 27 1 -0.3633 0.4260 -0.9352 28 1 -0.3633 -1.0230 0.0986 29 1 1.7659 -0.1695 -2.1361 30 1 1.6030 -1.7270 -1.2887 31 1 3.6378 1.2231 -0.7124 32 1 4.3860 2.8149 -0.6170 33 1 3.4984 -2.6527 0.0088 34 1 5.0412 -1.7698 0.1059 35 1 3.6517 -1.5688 2.1993 36 1 3.9920 0.0029 1.4332 37 1 2.1000 -2.8591 2.9318 38 1 2.4291 -1.3730 3.8546 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044504034.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:13 Heat of formation + Delta-G solvation = -185.236496 kcal Electronic energy + Delta-G solvation = -25254.515394 eV Core-core repulsion = 21102.899752 eV Total energy + Delta-G solvation = -4151.615642 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.08180 -48.60279 -48.54408 -41.71388 -39.04165 -36.17133 -34.61979 -33.79581 -32.14026 -30.57489 -28.37769 -25.82751 -25.49799 -24.99758 -23.09184 -21.57431 -20.22628 -19.56392 -19.48458 -19.10267 -18.38366 -17.63948 -17.25978 -16.78702 -16.33393 -15.82580 -15.49307 -15.46548 -15.39266 -15.03640 -14.98250 -14.82365 -14.72201 -14.68278 -14.52534 -14.41118 -13.60787 -13.42536 -13.33508 -13.09878 -12.94166 -12.71892 -12.62581 -12.22401 -12.05251 -11.92968 -11.81687 -11.66605 -11.15724 -10.89765 -10.30225 -9.65067 -9.05200 -8.31818 -5.25985 1.40123 1.48618 1.61775 1.71753 1.82777 1.96411 2.71238 2.74658 2.93118 3.05682 3.46206 3.55348 3.73100 3.84814 3.91534 3.98045 4.11190 4.17118 4.23839 4.27271 4.41901 4.57341 4.67836 4.76083 4.84676 4.98326 5.04143 5.16235 5.18871 5.27590 5.35373 5.62310 5.69465 6.32066 6.55285 6.96459 7.15204 8.06298 8.17931 9.19709 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.025908 B = 0.004067 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.491417 B = 6883.246760 C = 7219.355748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.148 3.852 3 H 0.048 0.952 4 C -0.123 4.123 5 C 0.168 3.832 6 H 0.045 0.955 7 N -0.743 5.743 8 C -0.318 4.318 9 H 0.068 0.932 10 C -0.104 4.104 11 N -0.980 5.980 12 Si 1.127 2.873 13 H -0.270 1.270 14 H -0.294 1.294 15 H -0.298 1.298 16 C -0.141 4.141 17 C 0.114 3.886 18 N -0.592 5.592 19 C 0.513 3.487 20 O -0.554 6.554 21 C -0.190 4.190 22 C 0.471 3.529 23 F -0.186 7.186 24 F -0.178 7.178 25 F -0.190 7.190 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.359 0.641 32 H 0.242 0.758 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.118 0.882 36 H 0.051 0.949 37 H 0.172 0.828 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.356 -14.325 8.242 17.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.045 3.955 3 H 0.066 0.934 4 C -0.162 4.162 5 C 0.060 3.940 6 H 0.063 0.937 7 N -0.386 5.386 8 C -0.450 4.450 9 H 0.086 0.914 10 C -0.295 4.295 11 N -0.629 5.629 12 Si 0.954 3.046 13 H -0.195 1.195 14 H -0.222 1.222 15 H -0.226 1.226 16 C -0.181 4.181 17 C -0.008 4.008 18 N -0.325 5.325 19 C 0.301 3.699 20 O -0.433 6.433 21 C -0.230 4.230 22 C 0.416 3.584 23 F -0.168 7.168 24 F -0.160 7.160 25 F -0.171 7.171 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.192 0.808 32 H 0.053 0.947 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.136 0.864 36 H 0.069 0.931 37 H 0.190 0.810 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -5.665 -13.247 7.930 16.446 hybrid contribution -1.461 -0.459 0.281 1.557 sum -7.126 -13.706 8.211 17.494 Atomic orbital electron populations 1.22044 0.92295 1.02831 1.00873 1.21114 0.95375 0.94639 0.84347 0.93360 1.22139 0.95740 1.01506 0.96772 1.20406 0.91463 0.85809 0.96321 0.93740 1.42691 1.13202 1.06499 1.76246 1.20395 0.91556 0.96671 1.36336 0.91406 1.26951 1.09062 0.91903 1.01602 1.70945 1.10900 1.33549 1.47532 0.82594 0.71015 0.75543 0.75477 1.19521 1.22164 1.22588 1.22358 1.01338 0.98927 0.95486 1.21799 0.78106 1.00987 0.99873 1.48087 1.08012 1.56660 1.19727 1.20256 0.85867 0.80327 0.83445 1.90840 1.18025 1.57534 1.76927 1.23147 0.97492 1.06888 0.95460 1.20006 0.84111 0.74120 0.80118 1.93190 1.66052 1.78703 1.78807 1.93203 1.88369 1.76166 1.58217 1.93194 1.87372 1.47466 1.89077 0.92090 0.92841 0.92044 0.91492 0.89463 0.80832 0.94702 0.89739 0.91499 0.86412 0.93082 0.81033 0.81910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.64 7.61 71.98 0.55 -3.09 16 2 C 0.15 4.57 3.19 44.96 0.14 4.71 16 3 H 0.05 1.77 6.65 -2.38 -0.02 1.76 16 4 C -0.12 -3.64 5.07 30.66 0.16 -3.48 16 5 C 0.17 5.79 3.10 45.02 0.14 5.93 16 6 H 0.04 1.61 8.08 -2.39 -0.02 1.59 16 7 N -0.74 -33.57 4.31 -322.81 -1.39 -34.96 16 8 C -0.32 -16.45 9.93 84.03 0.83 -15.61 16 9 H 0.07 3.42 7.83 -2.91 -0.02 3.40 16 10 C -0.10 -5.73 5.50 84.86 0.47 -5.27 16 11 N -0.98 -59.32 13.70 21.65 0.30 -59.02 16 12 Si 1.13 50.11 29.92 68.60 2.05 52.16 16 13 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 14 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 15 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 16 C -0.14 -3.81 5.78 30.67 0.18 -3.63 16 17 C 0.11 2.87 6.09 86.36 0.53 3.40 16 18 N -0.59 -15.85 2.97 -795.10 -2.36 -18.22 16 19 C 0.51 13.04 7.27 87.66 0.64 13.67 16 20 O -0.55 -17.65 10.40 -3.02 -0.03 -17.68 16 21 C -0.19 -3.07 4.11 29.85 0.12 -2.95 16 22 C 0.47 9.87 2.89 71.98 0.21 10.08 16 23 F -0.19 -4.61 16.40 44.97 0.74 -3.87 16 24 F -0.18 -3.34 17.32 44.97 0.78 -2.56 16 25 F -0.19 -4.96 16.40 44.97 0.74 -4.23 16 26 H 0.06 2.01 6.54 -2.39 -0.02 1.99 16 27 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.06 1.82 6.96 -2.39 -0.02 1.80 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.36 17.39 4.90 -92.70 -0.45 16.93 16 32 H 0.24 14.67 6.77 -92.71 -0.63 14.04 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 35 H 0.12 1.86 5.93 -2.39 -0.01 1.84 16 36 H 0.05 1.68 7.74 -2.39 -0.02 1.66 16 37 H 0.17 1.58 7.93 -2.39 -0.02 1.56 16 38 H 0.16 1.81 7.71 -2.39 -0.02 1.80 16 Total: -1.00 -67.47 311.00 5.56 -61.92 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.78 Total: 22.70 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 3.96 Total: 3.76 kcal Atomic # 7 Polarization: -108.74 SS G_CDS: -3.46 Total: -112.20 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.03 Total: -17.68 kcal Atomic # 9 Polarization: -12.91 SS G_CDS: 2.25 Total: -10.66 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 2.05 Total: 52.16 kcal Total: -67.47 5.56 -61.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044504034.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.320 kcal (2) G-P(sol) polarization free energy of solvation -67.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds