Wall clock time and date at job start Tue Mar 31 2020 07:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.58460 * 2 1 4 4 C 1.53192 * 109.58567 * 120.42319 * 2 1 3 5 5 C 1.53049 * 109.31366 * 174.42173 * 4 2 1 6 6 H 1.09003 * 109.44141 * 58.65177 * 5 4 2 7 7 N 1.46492 * 109.45633 * 178.61663 * 5 4 2 8 8 C 1.36939 * 119.99588 * 205.06811 * 7 5 4 9 9 H 1.08004 * 120.00261 * 0.02562 * 8 7 5 10 10 C 1.38818 * 120.00087 * 180.02562 * 8 7 5 11 11 N 1.31616 * 120.00206 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 119.99803 * 0.02562 * 10 8 7 13 13 H 1.48495 * 109.46706 * 269.99624 * 12 10 8 14 14 H 1.48494 * 109.46848 * 149.99985 * 12 10 8 15 15 H 1.48496 * 109.47081 * 29.99949 * 12 10 8 16 16 C 1.53034 * 109.53873 * 298.63981 * 5 4 2 17 17 C 1.53200 * 109.31415 * 61.36224 * 16 5 4 18 18 N 1.46922 * 109.58902 * 239.71612 * 2 1 3 19 19 C 1.34777 * 120.63183 * 6.62471 * 18 2 1 20 20 O 1.21279 * 120.00072 * 354.92923 * 19 18 2 21 21 C 1.50697 * 120.00232 * 174.92839 * 19 18 2 22 22 C 1.53004 * 109.47427 * 180.02562 * 21 19 18 23 23 F 1.39902 * 109.46888 * 59.99952 * 22 21 19 24 24 F 1.39892 * 109.47146 * 180.02562 * 22 21 19 25 25 F 1.39902 * 109.46690 * 299.99752 * 22 21 19 26 26 H 1.09000 * 109.47232 * 175.91829 * 1 2 3 27 27 H 1.09001 * 109.47694 * 295.92503 * 1 2 3 28 28 H 1.09007 * 109.47368 * 55.92365 * 1 2 3 29 29 H 1.09001 * 109.49358 * 54.47560 * 4 2 1 30 30 H 1.08998 * 109.50230 * 294.37998 * 4 2 1 31 31 H 0.96992 * 120.00706 * 25.07222 * 7 5 4 32 32 H 0.96993 * 120.00180 * 179.97438 * 11 10 8 33 33 H 1.08995 * 109.50095 * 181.31425 * 16 5 4 34 34 H 1.09007 * 109.50128 * 301.37872 * 16 5 4 35 35 H 1.08996 * 109.58226 * 65.15576 * 17 16 5 36 36 H 1.09000 * 109.58501 * 185.43491 * 17 16 5 37 37 H 1.09003 * 109.46995 * 300.00106 * 21 19 18 38 38 H 1.08999 * 109.47011 * 59.99583 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7309 1.2446 5 6 3.5675 -0.8494 1.1692 6 1 4.0058 0.1462 1.0995 7 7 4.0650 -1.5186 2.3736 8 6 5.3491 -1.3010 2.7967 9 1 5.9949 -0.6358 2.2428 10 6 5.8208 -1.9356 3.9377 11 7 7.0552 -1.7268 4.3442 12 14 4.7042 -3.0868 4.8955 13 1 3.9684 -2.3158 5.9296 14 1 5.5225 -4.1383 5.5509 15 1 3.7341 -3.7212 3.9673 16 6 3.9569 -1.6655 -0.0654 17 6 3.4651 -0.9452 -1.3248 18 7 2.0225 -0.6980 -1.1953 19 6 1.1675 -1.1035 -2.1550 20 8 -0.0280 -0.9761 -1.9953 21 6 1.6968 -1.7152 -3.4264 22 6 0.5267 -2.0847 -4.3404 23 9 -0.2071 -0.9337 -4.6469 24 9 1.0181 -2.6530 -5.5204 25 9 -0.3008 -3.0058 -3.6891 26 1 -0.3634 -1.0250 -0.0731 27 1 -0.3634 0.4493 0.9242 28 1 -0.3634 0.5758 -0.8512 29 1 1.6029 -1.7269 1.2892 30 1 1.7659 -0.1695 2.1367 31 1 3.4851 -2.1158 2.8713 32 1 7.3846 -2.1699 5.1416 33 1 5.0412 -1.7694 -0.1058 34 1 3.4988 -2.6530 -0.0082 35 1 3.9904 0.0038 -1.4316 36 1 3.6542 -1.5679 -2.1993 37 1 2.3413 -0.9974 -3.9340 38 1 2.2690 -2.6116 -3.1876 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044504038.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:20 Heat of formation + Delta-G solvation = -164.583040 kcal Electronic energy + Delta-G solvation = -24813.747794 eV Core-core repulsion = 20663.027753 eV Total energy + Delta-G solvation = -4150.720041 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.23575 -47.78123 -47.64510 -40.65880 -37.69484 -34.79811 -33.60380 -32.06053 -31.27347 -29.84582 -27.23869 -24.82197 -24.15757 -22.83799 -21.82339 -20.36879 -19.55581 -18.70990 -18.57892 -17.63084 -17.52707 -16.66412 -15.99739 -15.62073 -14.92348 -14.64450 -14.56111 -14.28718 -14.11698 -13.97576 -13.85001 -13.81448 -13.73417 -13.55227 -13.37949 -12.74237 -12.57346 -12.43173 -12.29662 -12.09806 -11.94117 -11.58027 -11.08386 -11.03483 -10.96054 -10.63420 -10.35566 -10.00557 -9.67013 -9.27965 -9.01187 -8.66033 -7.37156 -5.85079 -3.21502 2.30401 2.32343 2.83328 3.32267 3.35589 3.40800 3.49910 3.77119 3.82835 4.37514 4.52211 4.72838 4.75786 4.86771 4.89425 5.03308 5.14234 5.30321 5.39119 5.48078 5.62208 5.70084 5.82550 5.92788 5.96149 6.13675 6.23029 6.27234 6.31997 6.57969 6.68817 6.83445 7.22631 7.89721 7.90254 8.33900 9.11805 9.84656 10.03934 11.33000 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.027869 B = 0.003688 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.443665 B = 7590.979556 C = 7843.072807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.149 3.851 3 H 0.076 0.924 4 C -0.140 4.140 5 C 0.183 3.817 6 H 0.058 0.942 7 N -0.748 5.748 8 C -0.247 4.247 9 H 0.091 0.909 10 C 0.007 3.993 11 N -0.932 5.932 12 Si 0.883 3.117 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.278 1.278 16 C -0.153 4.153 17 C 0.103 3.897 18 N -0.597 5.597 19 C 0.519 3.481 20 O -0.520 6.520 21 C -0.200 4.200 22 C 0.473 3.527 23 F -0.174 7.174 24 F -0.185 7.185 25 F -0.173 7.173 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.361 0.639 32 H 0.260 0.740 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.137 0.863 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.199 1.437 -17.291 20.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.046 3.954 3 H 0.094 0.906 4 C -0.179 4.179 5 C 0.073 3.927 6 H 0.076 0.924 7 N -0.389 5.389 8 C -0.377 4.377 9 H 0.108 0.892 10 C -0.189 4.189 11 N -0.580 5.580 12 Si 0.714 3.286 13 H -0.210 1.210 14 H -0.217 1.217 15 H -0.204 1.204 16 C -0.194 4.194 17 C -0.020 4.020 18 N -0.330 5.330 19 C 0.305 3.695 20 O -0.397 6.397 21 C -0.241 4.241 22 C 0.418 3.582 23 F -0.156 7.156 24 F -0.166 7.166 25 F -0.155 7.155 26 H 0.090 0.910 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.194 0.806 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.155 0.845 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.600 1.589 -17.152 20.767 hybrid contribution -0.513 -1.071 0.618 1.339 sum -12.113 0.518 -16.535 20.503 Atomic orbital electron populations 1.22224 0.92604 1.03830 1.00740 1.21355 0.95593 0.95144 0.83278 0.90577 1.22359 0.97506 1.01075 0.96941 1.20138 0.90773 0.95398 0.86364 0.92430 1.42788 1.13259 1.54710 1.28184 1.19055 0.87705 1.23421 1.07529 0.89151 1.24669 0.96072 0.99983 0.98175 1.69692 1.15098 1.47039 1.26135 0.86571 0.80340 0.81307 0.80403 1.21014 1.21716 1.20376 1.22665 1.02349 0.99818 0.94534 1.21962 0.79134 1.01104 0.99783 1.48136 1.07701 1.57170 1.20005 1.19694 0.86720 0.79040 0.84093 1.90868 1.14935 1.55021 1.78916 1.23104 0.97745 1.07014 0.96221 1.19751 0.84039 0.75102 0.79303 1.93216 1.79305 1.49556 1.93491 1.93193 1.87668 1.85551 1.50211 1.93226 1.74342 1.67047 1.80860 0.91028 0.93621 0.91228 0.91767 0.90334 0.80596 0.92975 0.89873 0.92153 0.90702 0.90375 0.84544 0.84484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 7.59 37.16 0.28 -1.47 16 2 C 0.15 1.86 3.49 -67.60 -0.24 1.63 16 3 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.14 -2.03 4.84 -26.61 -0.13 -2.15 16 5 C 0.18 3.11 2.73 -67.89 -0.19 2.92 16 6 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 7 N -0.75 -16.48 4.92 -53.39 -0.26 -16.74 16 8 C -0.25 -6.58 10.41 -15.06 -0.16 -6.74 16 9 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 10 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 11 N -0.93 -28.37 13.97 55.49 0.78 -27.59 16 12 Si 0.88 21.49 27.74 -169.99 -4.71 16.77 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 15 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 16 C -0.15 -2.19 5.66 -26.61 -0.15 -2.34 16 17 C 0.10 1.06 6.32 -3.71 -0.02 1.03 16 18 N -0.60 -6.87 2.97 -165.22 -0.49 -7.37 16 19 C 0.52 6.08 7.37 -10.99 -0.08 5.99 16 20 O -0.52 -7.61 10.23 5.56 0.06 -7.55 16 21 C -0.20 -1.63 4.15 -27.88 -0.12 -1.75 16 22 C 0.47 4.91 2.89 37.16 0.11 5.02 16 23 F -0.17 -2.10 16.40 2.25 0.04 -2.06 16 24 F -0.18 -1.79 17.32 2.25 0.04 -1.75 16 25 F -0.17 -2.18 16.40 2.25 0.04 -2.14 16 26 H 0.07 1.04 6.73 -51.93 -0.35 0.69 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.94 6.77 -51.92 -0.35 0.59 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.36 8.00 5.66 -40.82 -0.23 7.77 16 32 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.57 5.97 -51.93 -0.31 0.26 16 37 H 0.14 0.73 8.11 -51.93 -0.42 0.31 16 38 H 0.14 0.84 7.48 -51.93 -0.39 0.45 16 LS Contribution 313.82 15.07 4.73 4.73 Total: -1.00 -31.63 313.82 -5.60 -37.23 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -5.02 Total: 4.23 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -0.78 Total: 2.25 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.02 Total: -51.70 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: 0.06 Total: -7.55 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 0.11 Total: -5.96 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.77 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.63 -5.60 -37.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044504038.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.355 kcal (2) G-P(sol) polarization free energy of solvation -31.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds