Wall clock time and date at job start Tue Mar 31 2020 07:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.58460 * 2 1 4 4 C 1.53192 * 109.58567 * 120.42319 * 2 1 3 5 5 C 1.53049 * 109.31366 * 174.42173 * 4 2 1 6 6 H 1.09003 * 109.44141 * 58.65177 * 5 4 2 7 7 N 1.46492 * 109.45633 * 178.61663 * 5 4 2 8 8 C 1.36939 * 119.99588 * 205.06811 * 7 5 4 9 9 H 1.08004 * 120.00261 * 0.02562 * 8 7 5 10 10 C 1.38818 * 120.00087 * 180.02562 * 8 7 5 11 11 N 1.31616 * 120.00206 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 119.99803 * 0.02562 * 10 8 7 13 13 H 1.48495 * 109.46706 * 269.99624 * 12 10 8 14 14 H 1.48494 * 109.46848 * 149.99985 * 12 10 8 15 15 H 1.48496 * 109.47081 * 29.99949 * 12 10 8 16 16 C 1.53034 * 109.53873 * 298.63981 * 5 4 2 17 17 C 1.53200 * 109.31415 * 61.36224 * 16 5 4 18 18 N 1.46922 * 109.58902 * 239.71612 * 2 1 3 19 19 C 1.34777 * 120.63183 * 6.62471 * 18 2 1 20 20 O 1.21279 * 120.00072 * 354.92923 * 19 18 2 21 21 C 1.50697 * 120.00232 * 174.92839 * 19 18 2 22 22 C 1.53004 * 109.47427 * 180.02562 * 21 19 18 23 23 F 1.39902 * 109.46888 * 59.99952 * 22 21 19 24 24 F 1.39892 * 109.47146 * 180.02562 * 22 21 19 25 25 F 1.39902 * 109.46690 * 299.99752 * 22 21 19 26 26 H 1.09000 * 109.47232 * 175.91829 * 1 2 3 27 27 H 1.09001 * 109.47694 * 295.92503 * 1 2 3 28 28 H 1.09007 * 109.47368 * 55.92365 * 1 2 3 29 29 H 1.09001 * 109.49358 * 54.47560 * 4 2 1 30 30 H 1.08998 * 109.50230 * 294.37998 * 4 2 1 31 31 H 0.96992 * 120.00706 * 25.07222 * 7 5 4 32 32 H 0.96993 * 120.00180 * 179.97438 * 11 10 8 33 33 H 1.08995 * 109.50095 * 181.31425 * 16 5 4 34 34 H 1.09007 * 109.50128 * 301.37872 * 16 5 4 35 35 H 1.08996 * 109.58226 * 65.15576 * 17 16 5 36 36 H 1.09000 * 109.58501 * 185.43491 * 17 16 5 37 37 H 1.09003 * 109.46995 * 300.00106 * 21 19 18 38 38 H 1.08999 * 109.47011 * 59.99583 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7309 1.2446 5 6 3.5675 -0.8494 1.1692 6 1 4.0058 0.1462 1.0995 7 7 4.0650 -1.5186 2.3736 8 6 5.3491 -1.3010 2.7967 9 1 5.9949 -0.6358 2.2428 10 6 5.8208 -1.9356 3.9377 11 7 7.0552 -1.7268 4.3442 12 14 4.7042 -3.0868 4.8955 13 1 3.9684 -2.3158 5.9296 14 1 5.5225 -4.1383 5.5509 15 1 3.7341 -3.7212 3.9673 16 6 3.9569 -1.6655 -0.0654 17 6 3.4651 -0.9452 -1.3248 18 7 2.0225 -0.6980 -1.1953 19 6 1.1675 -1.1035 -2.1550 20 8 -0.0280 -0.9761 -1.9953 21 6 1.6968 -1.7152 -3.4264 22 6 0.5267 -2.0847 -4.3404 23 9 -0.2071 -0.9337 -4.6469 24 9 1.0181 -2.6530 -5.5204 25 9 -0.3008 -3.0058 -3.6891 26 1 -0.3634 -1.0250 -0.0731 27 1 -0.3634 0.4493 0.9242 28 1 -0.3634 0.5758 -0.8512 29 1 1.6029 -1.7269 1.2892 30 1 1.7659 -0.1695 2.1367 31 1 3.4851 -2.1158 2.8713 32 1 7.3846 -2.1699 5.1416 33 1 5.0412 -1.7694 -0.1058 34 1 3.4988 -2.6530 -0.0082 35 1 3.9904 0.0038 -1.4316 36 1 3.6542 -1.5679 -2.1993 37 1 2.3413 -0.9974 -3.9340 38 1 2.2690 -2.6116 -3.1876 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044504038.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:19 Heat of formation + Delta-G solvation = -185.153280 kcal Electronic energy + Delta-G solvation = -24814.639787 eV Core-core repulsion = 20663.027753 eV Total energy + Delta-G solvation = -4151.612034 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.04783 -48.57270 -48.51296 -41.61841 -38.86458 -36.30732 -34.56253 -33.82705 -32.17471 -31.38455 -28.39503 -26.04292 -25.24337 -24.26997 -22.86479 -21.69861 -20.56989 -19.69056 -19.52446 -19.25557 -18.33821 -17.55910 -16.93569 -16.70757 -16.57666 -15.90597 -15.46659 -15.42059 -15.18575 -14.94743 -14.87709 -14.72992 -14.68741 -14.64976 -14.41725 -14.37488 -13.82621 -13.49247 -13.30893 -13.14747 -12.98359 -12.89358 -12.66554 -12.56053 -12.13227 -12.03241 -11.91249 -11.77523 -11.35773 -10.92976 -10.23964 -9.64259 -9.29639 -8.00658 -5.33219 1.38957 1.40502 1.45233 1.47812 1.53368 2.01078 2.49308 2.75721 2.97601 3.09470 3.31340 3.49657 3.60354 3.86215 4.00064 4.07568 4.16448 4.23248 4.28541 4.34248 4.57589 4.60512 4.63548 4.78793 4.84136 5.00895 5.06288 5.14984 5.24772 5.42258 5.50884 5.68071 5.80287 6.23808 6.33479 7.01965 7.09964 7.87136 8.04287 9.20742 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.027869 B = 0.003688 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.443665 B = 7590.979556 C = 7843.072807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.152 3.848 3 H 0.089 0.911 4 C -0.129 4.129 5 C 0.174 3.826 6 H 0.051 0.949 7 N -0.754 5.754 8 C -0.223 4.223 9 H 0.064 0.936 10 C -0.062 4.062 11 N -0.984 5.984 12 Si 0.948 3.052 13 H -0.282 1.282 14 H -0.299 1.299 15 H -0.256 1.256 16 C -0.145 4.145 17 C 0.110 3.890 18 N -0.598 5.598 19 C 0.514 3.486 20 O -0.554 6.554 21 C -0.191 4.191 22 C 0.468 3.532 23 F -0.187 7.187 24 F -0.180 7.180 25 F -0.190 7.190 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.362 0.638 32 H 0.256 0.744 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.090 0.910 36 H 0.119 0.881 37 H 0.174 0.826 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.072 1.180 -18.940 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.049 3.951 3 H 0.107 0.893 4 C -0.168 4.168 5 C 0.066 3.934 6 H 0.069 0.931 7 N -0.396 5.396 8 C -0.354 4.354 9 H 0.082 0.918 10 C -0.253 4.253 11 N -0.635 5.635 12 Si 0.777 3.223 13 H -0.208 1.208 14 H -0.226 1.226 15 H -0.180 1.180 16 C -0.186 4.186 17 C -0.012 4.012 18 N -0.330 5.330 19 C 0.302 3.698 20 O -0.433 6.433 21 C -0.231 4.231 22 C 0.414 3.586 23 F -0.169 7.169 24 F -0.162 7.162 25 F -0.172 7.172 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.195 0.805 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.137 0.863 37 H 0.191 0.809 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.513 1.339 -18.862 22.675 hybrid contribution -0.265 -0.918 1.039 1.411 sum -12.779 0.422 -17.824 21.935 Atomic orbital electron populations 1.22063 0.92735 1.02556 1.00861 1.21270 0.95322 0.95596 0.82913 0.89323 1.22220 0.95354 1.01039 0.98169 1.20431 0.92322 0.95018 0.85632 0.93090 1.42862 1.11613 1.55149 1.30000 1.19042 0.88947 1.21113 1.06280 0.91831 1.25405 0.97496 1.02584 0.99854 1.69860 1.17360 1.49201 1.27033 0.85508 0.78647 0.79047 0.79126 1.20798 1.22608 1.18046 1.22456 1.01361 0.99547 0.95232 1.22024 0.78177 1.02170 0.98865 1.48157 1.08216 1.56968 1.19679 1.20224 0.86278 0.78383 0.84943 1.90868 1.16459 1.56196 1.79753 1.23174 0.97052 1.08891 0.93966 1.20103 0.84329 0.74434 0.79751 1.93192 1.79849 1.50208 1.93636 1.93202 1.87459 1.85450 1.50039 1.93194 1.75112 1.67676 1.81214 0.92866 0.92785 0.91888 0.92391 0.90584 0.80524 0.93486 0.91498 0.92628 0.89170 0.86347 0.80889 0.81728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.02 7.59 71.98 0.55 -2.47 16 2 C 0.15 3.46 3.49 44.97 0.16 3.62 16 3 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 4 C -0.13 -3.51 4.84 30.67 0.15 -3.36 16 5 C 0.17 5.65 2.73 45.02 0.12 5.77 16 6 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 7 N -0.75 -32.56 4.92 -322.81 -1.59 -34.15 16 8 C -0.22 -11.92 10.41 84.03 0.87 -11.05 16 9 H 0.06 3.69 8.06 -2.91 -0.02 3.66 16 10 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 11 N -0.98 -61.32 13.97 21.65 0.30 -61.02 16 12 Si 0.95 44.49 27.74 68.60 1.90 46.39 16 13 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 14 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 15 H -0.26 -10.89 6.52 99.48 0.65 -10.25 16 16 C -0.15 -3.84 5.66 30.67 0.17 -3.66 16 17 C 0.11 1.81 6.32 86.36 0.55 2.36 16 18 N -0.60 -11.85 2.97 -795.03 -2.36 -14.21 16 19 C 0.51 10.50 7.37 87.66 0.65 11.15 16 20 O -0.55 -15.28 10.23 -3.03 -0.03 -15.31 16 21 C -0.19 -2.33 4.15 29.85 0.12 -2.20 16 22 C 0.47 8.56 2.89 71.98 0.21 8.77 16 23 F -0.19 -4.19 16.40 44.97 0.74 -3.46 16 24 F -0.18 -3.01 17.32 44.97 0.78 -2.23 16 25 F -0.19 -4.50 16.40 44.97 0.74 -3.77 16 26 H 0.05 1.49 6.73 -2.39 -0.02 1.47 16 27 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.06 1.62 6.77 -2.38 -0.02 1.60 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.36 15.46 5.66 -92.71 -0.52 14.94 16 32 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.09 1.30 8.14 -2.39 -0.02 1.29 16 36 H 0.12 1.07 5.97 -2.39 -0.01 1.05 16 37 H 0.17 0.88 8.11 -2.39 -0.02 0.86 16 38 H 0.17 1.15 7.48 -2.39 -0.02 1.14 16 Total: -1.00 -70.59 313.82 4.99 -65.60 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.50 Total: 16.28 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 4.01 Total: 5.87 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -3.65 Total: -109.38 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.03 Total: -15.31 kcal Atomic # 9 Polarization: -11.70 SS G_CDS: 2.25 Total: -9.45 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.90 Total: 46.39 kcal Total: -70.59 4.99 -65.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044504038.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.554 kcal (2) G-P(sol) polarization free energy of solvation -70.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds