Wall clock time and date at job start Tue Mar 31 2020 07:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46817 * 2 1 4 4 C 1.50701 * 109.47195 * 240.00470 * 2 1 3 5 5 O 1.21282 * 119.99504 * 246.76967 * 4 2 1 6 6 N 1.34772 * 120.00458 * 66.76316 * 4 2 1 7 7 C 1.47413 * 125.65126 * 185.79794 * 6 4 2 8 8 C 1.54913 * 104.83396 * 204.16850 * 7 6 4 9 9 C 1.55156 * 101.58115 * 322.99060 * 8 7 6 10 10 H 1.08998 * 110.87383 * 277.06610 * 9 8 7 11 11 N 1.46501 * 110.72098 * 153.86790 * 9 8 7 12 12 C 1.36933 * 120.00525 * 91.75483 * 11 9 8 13 13 H 1.08001 * 119.99479 * 359.72245 * 12 11 9 14 14 C 1.38807 * 120.00347 * 179.72807 * 12 11 9 15 15 N 1.31621 * 119.99874 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00096 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47184 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47466 * 119.99405 * 16 14 12 19 19 H 1.48506 * 109.47087 * 239.99672 * 16 14 12 20 20 C 1.47021 * 125.64444 * 5.84679 * 6 4 2 21 21 H 1.09007 * 110.01556 * 298.38975 * 20 6 4 22 22 C 1.52998 * 109.88705 * 59.48353 * 20 6 4 23 23 C 1.52999 * 109.46840 * 120.00134 * 2 1 3 24 24 F 1.39906 * 109.46625 * 180.02562 * 23 2 1 25 25 F 1.39895 * 109.47066 * 299.99785 * 23 2 1 26 26 F 1.39896 * 109.47296 * 60.00064 * 23 2 1 27 27 H 1.09004 * 109.47034 * 53.92714 * 1 2 3 28 28 H 1.09001 * 109.47168 * 173.92540 * 1 2 3 29 29 H 1.08998 * 109.47224 * 293.93167 * 1 2 3 30 30 H 1.08998 * 110.37050 * 323.00625 * 7 6 4 31 31 H 1.09000 * 110.37101 * 85.32834 * 7 6 4 32 32 H 1.09006 * 111.00601 * 204.92082 * 8 7 6 33 33 H 1.08999 * 111.00387 * 81.06908 * 8 7 6 34 34 H 0.96999 * 119.99323 * 271.47767 * 11 9 8 35 35 H 0.97000 * 120.00138 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.47544 * 170.75099 * 22 20 6 37 37 H 1.09000 * 109.47085 * 290.74799 * 22 20 6 38 38 H 1.08997 * 109.47455 * 50.74944 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.6251 -1.7630 -1.1234 6 7 1.8229 -0.1759 -2.4499 7 6 2.1503 -0.8166 -3.7365 8 6 2.3172 0.3576 -4.7331 9 6 1.2159 1.3369 -4.2481 10 1 0.2448 1.0649 -4.6616 11 7 1.5584 2.7173 -4.5993 12 6 1.1226 3.2511 -5.7826 13 1 0.5302 2.6528 -6.4591 14 6 1.4424 4.5608 -6.1128 15 7 2.1641 5.2899 -5.2882 16 14 0.8485 5.2886 -7.7274 17 1 0.0622 4.2708 -8.4697 18 1 -0.0064 6.4713 -7.4526 19 1 2.0181 5.7021 -8.5439 20 6 1.2310 1.1431 -2.7171 21 1 0.2133 1.1810 -2.3286 22 6 2.0784 2.2360 -2.0627 23 6 2.0400 -0.7213 1.2492 24 9 3.4390 -0.7208 1.2495 25 9 1.5737 -0.0618 2.3915 26 9 1.5737 -2.0402 1.2492 27 1 -0.3633 0.6051 -0.8307 28 1 -0.3633 -1.0219 -0.1088 29 1 -0.3633 0.4169 0.9393 30 1 3.0800 -1.3795 -3.6544 31 1 1.3371 -1.4699 -4.0528 32 1 2.1275 0.0319 -5.7560 33 1 3.3063 0.8072 -4.6450 34 1 2.0905 3.2545 -3.9917 35 1 2.3873 6.2053 -5.5188 36 1 1.7325 3.2138 -2.3980 37 1 1.9836 2.1692 -0.9789 38 1 3.1229 2.1039 -2.3449 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074804537.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:14 Heat of formation + Delta-G solvation = -164.462475 kcal Electronic energy + Delta-G solvation = -25200.004976 eV Core-core repulsion = 21049.290163 eV Total energy + Delta-G solvation = -4150.714813 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.12816 -47.65055 -47.52466 -40.39410 -37.83410 -34.49677 -34.13250 -31.60210 -30.89682 -28.93750 -26.64919 -25.47296 -24.33566 -23.55905 -21.76061 -20.01450 -19.40834 -18.62305 -18.31446 -17.78472 -17.22835 -16.70301 -15.89319 -15.26952 -14.94541 -14.58379 -14.47727 -14.29830 -14.00013 -13.87801 -13.77770 -13.70923 -13.65680 -13.32533 -13.06758 -12.69055 -12.50106 -12.41618 -12.12308 -11.81385 -11.66390 -11.58414 -11.27138 -11.01958 -10.89051 -10.55441 -10.29728 -10.12431 -9.93389 -9.77180 -9.06679 -8.60221 -7.15596 -5.93213 -3.23579 2.42375 2.47338 2.97227 3.34275 3.40733 3.42679 3.59679 3.92351 3.94217 4.42190 4.48853 4.63876 4.73032 4.92154 5.04351 5.18591 5.28194 5.31370 5.38510 5.46521 5.54000 5.64412 5.77799 5.84129 5.96249 6.06450 6.14813 6.22822 6.41217 6.49257 6.56631 6.80454 7.50586 7.57493 8.00704 8.25064 9.37260 9.89531 10.24132 11.29182 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.030704 B = 0.003865 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.725536 B = 7243.356051 C = 7633.608422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.171 4.171 3 H 0.146 0.854 4 C 0.540 3.460 5 O -0.532 6.532 6 N -0.600 5.600 7 C 0.106 3.894 8 C -0.154 4.154 9 C 0.176 3.824 10 H 0.070 0.930 11 N -0.716 5.716 12 C -0.248 4.248 13 H 0.073 0.927 14 C -0.008 4.008 15 N -0.931 5.931 16 Si 0.908 3.092 17 H -0.279 1.279 18 H -0.291 1.291 19 H -0.291 1.291 20 C 0.109 3.891 21 H 0.080 0.920 22 C -0.173 4.173 23 C 0.473 3.527 24 F -0.175 7.175 25 F -0.182 7.182 26 F -0.172 7.172 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.390 0.610 35 H 0.257 0.743 36 H 0.096 0.904 37 H 0.049 0.951 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.182 -9.789 10.696 14.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.193 4.193 3 H 0.163 0.837 4 C 0.326 3.674 5 O -0.409 6.409 6 N -0.333 5.333 7 C -0.016 4.016 8 C -0.196 4.196 9 C 0.064 3.936 10 H 0.088 0.912 11 N -0.360 5.360 12 C -0.378 4.378 13 H 0.091 0.909 14 C -0.205 4.205 15 N -0.579 5.579 16 Si 0.739 3.261 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.218 1.218 20 C 0.005 3.995 21 H 0.098 0.902 22 C -0.230 4.230 23 C 0.418 3.582 24 F -0.157 7.157 25 F -0.164 7.164 26 F -0.153 7.153 27 H 0.109 0.891 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.229 0.771 35 H 0.067 0.933 36 H 0.115 0.885 37 H 0.068 0.932 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.919 -10.321 10.673 15.131 hybrid contribution 0.055 0.636 -0.488 0.803 sum -2.864 -9.685 10.185 14.344 Atomic orbital electron populations 1.21894 0.89248 1.04676 1.05140 1.22912 1.01653 1.03654 0.91073 0.83716 1.19252 0.79768 0.85135 0.83232 1.90782 1.41270 1.23017 1.85856 1.48423 1.61006 1.18908 1.04998 1.22312 1.00787 0.96296 0.82209 1.23585 1.02269 0.95651 0.98072 1.21151 0.96386 0.87169 0.88904 0.91249 1.42708 1.63063 1.07850 1.22363 1.19290 1.27453 0.95334 0.95769 0.90902 1.24747 1.00369 0.96715 0.98621 1.69652 1.42278 1.09231 1.36692 0.86109 0.77925 0.78984 0.83066 1.20459 1.21769 1.21784 1.22192 0.96475 0.81451 0.99405 0.90182 1.22356 1.01178 1.00679 0.98834 1.19821 0.75872 0.77871 0.84625 1.93210 1.29406 1.96371 1.96685 1.93172 1.88573 1.80890 1.53759 1.93198 1.88263 1.37178 1.96668 0.89093 0.90721 0.89950 0.90796 0.91510 0.90325 0.90643 0.77144 0.93323 0.88511 0.93247 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.80 37.16 0.33 -1.10 16 2 C -0.17 -2.02 2.03 -91.77 -0.19 -2.20 16 3 H 0.15 1.52 4.93 -51.93 -0.26 1.27 16 4 C 0.54 7.98 6.66 -10.99 -0.07 7.91 16 5 O -0.53 -9.58 15.09 5.56 0.08 -9.49 16 6 N -0.60 -8.51 3.08 -163.02 -0.50 -9.02 16 7 C 0.11 1.49 6.94 -2.53 -0.02 1.47 16 8 C -0.15 -2.41 6.77 -24.58 -0.17 -2.58 16 9 C 0.18 2.99 3.49 -66.10 -0.23 2.76 16 10 H 0.07 1.17 8.09 -51.93 -0.42 0.75 16 11 N -0.72 -15.70 4.91 -51.65 -0.25 -15.95 16 12 C -0.25 -6.22 9.96 -15.06 -0.15 -6.37 16 13 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 14 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 15 N -0.93 -26.10 13.06 55.49 0.72 -25.38 16 16 Si 0.91 20.99 29.55 -169.99 -5.02 15.97 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 C 0.11 1.54 2.98 -66.95 -0.20 1.34 16 21 H 0.08 1.00 5.77 -51.93 -0.30 0.70 16 22 C -0.17 -2.48 8.02 37.16 0.30 -2.18 16 23 C 0.47 6.14 2.43 37.16 0.09 6.23 16 24 F -0.18 -2.58 16.57 2.25 0.04 -2.54 16 25 F -0.18 -2.13 16.69 2.25 0.04 -2.10 16 26 F -0.17 -2.45 15.84 2.25 0.04 -2.41 16 27 H 0.09 0.80 5.50 -51.93 -0.29 0.51 16 28 H 0.07 0.71 7.97 -51.93 -0.41 0.30 16 29 H 0.08 0.64 7.64 -51.93 -0.40 0.24 16 30 H 0.07 1.07 7.98 -51.93 -0.41 0.65 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.39 8.97 4.96 -40.82 -0.20 8.77 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.10 1.61 6.26 -51.93 -0.33 1.28 16 37 H 0.05 0.57 5.04 -51.93 -0.26 0.31 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 312.54 15.07 4.71 4.71 Total: -1.00 -29.36 312.54 -5.07 -34.43 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -4.51 Total: 6.82 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -0.40 Total: 4.97 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.03 Total: -50.35 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.08 Total: -9.49 kcal Atomic # 9 Polarization: -7.16 SS G_CDS: 0.11 Total: -7.05 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.36 -5.07 -34.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074804537.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.033 kcal (2) G-P(sol) polarization free energy of solvation -29.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds