Wall clock time and date at job start Tue Mar 31 2020 07:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46817 * 2 1 4 4 C 1.50701 * 109.47195 * 240.00470 * 2 1 3 5 5 O 1.21282 * 119.99504 * 246.76967 * 4 2 1 6 6 N 1.34772 * 120.00458 * 66.76316 * 4 2 1 7 7 C 1.47413 * 125.65126 * 185.79794 * 6 4 2 8 8 C 1.54913 * 104.83396 * 204.16850 * 7 6 4 9 9 C 1.55156 * 101.58115 * 322.99060 * 8 7 6 10 10 H 1.08998 * 110.87383 * 277.06610 * 9 8 7 11 11 N 1.46501 * 110.72098 * 153.86790 * 9 8 7 12 12 C 1.36933 * 120.00525 * 91.75483 * 11 9 8 13 13 H 1.08001 * 119.99479 * 359.72245 * 12 11 9 14 14 C 1.38807 * 120.00347 * 179.72807 * 12 11 9 15 15 N 1.31621 * 119.99874 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00096 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47184 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47466 * 119.99405 * 16 14 12 19 19 H 1.48506 * 109.47087 * 239.99672 * 16 14 12 20 20 C 1.47021 * 125.64444 * 5.84679 * 6 4 2 21 21 H 1.09007 * 110.01556 * 298.38975 * 20 6 4 22 22 C 1.52998 * 109.88705 * 59.48353 * 20 6 4 23 23 C 1.52999 * 109.46840 * 120.00134 * 2 1 3 24 24 F 1.39906 * 109.46625 * 180.02562 * 23 2 1 25 25 F 1.39895 * 109.47066 * 299.99785 * 23 2 1 26 26 F 1.39896 * 109.47296 * 60.00064 * 23 2 1 27 27 H 1.09004 * 109.47034 * 53.92714 * 1 2 3 28 28 H 1.09001 * 109.47168 * 173.92540 * 1 2 3 29 29 H 1.08998 * 109.47224 * 293.93167 * 1 2 3 30 30 H 1.08998 * 110.37050 * 323.00625 * 7 6 4 31 31 H 1.09000 * 110.37101 * 85.32834 * 7 6 4 32 32 H 1.09006 * 111.00601 * 204.92082 * 8 7 6 33 33 H 1.08999 * 111.00387 * 81.06908 * 8 7 6 34 34 H 0.96999 * 119.99323 * 271.47767 * 11 9 8 35 35 H 0.97000 * 120.00138 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.47544 * 170.75099 * 22 20 6 37 37 H 1.09000 * 109.47085 * 290.74799 * 22 20 6 38 38 H 1.08997 * 109.47455 * 50.74944 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.6251 -1.7630 -1.1234 6 7 1.8229 -0.1759 -2.4499 7 6 2.1503 -0.8166 -3.7365 8 6 2.3172 0.3576 -4.7331 9 6 1.2159 1.3369 -4.2481 10 1 0.2448 1.0649 -4.6616 11 7 1.5584 2.7173 -4.5993 12 6 1.1226 3.2511 -5.7826 13 1 0.5302 2.6528 -6.4591 14 6 1.4424 4.5608 -6.1128 15 7 2.1641 5.2899 -5.2882 16 14 0.8485 5.2886 -7.7274 17 1 0.0622 4.2708 -8.4697 18 1 -0.0064 6.4713 -7.4526 19 1 2.0181 5.7021 -8.5439 20 6 1.2310 1.1431 -2.7171 21 1 0.2133 1.1810 -2.3286 22 6 2.0784 2.2360 -2.0627 23 6 2.0400 -0.7213 1.2492 24 9 3.4390 -0.7208 1.2495 25 9 1.5737 -0.0618 2.3915 26 9 1.5737 -2.0402 1.2492 27 1 -0.3633 0.6051 -0.8307 28 1 -0.3633 -1.0219 -0.1088 29 1 -0.3633 0.4169 0.9393 30 1 3.0800 -1.3795 -3.6544 31 1 1.3371 -1.4699 -4.0528 32 1 2.1275 0.0319 -5.7560 33 1 3.3063 0.8072 -4.6450 34 1 2.0905 3.2545 -3.9917 35 1 2.3873 6.2053 -5.5188 36 1 1.7325 3.2138 -2.3980 37 1 1.9836 2.1692 -0.9789 38 1 3.1229 2.1039 -2.3449 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074804537.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:14 Heat of formation + Delta-G solvation = -182.296467 kcal Electronic energy + Delta-G solvation = -25200.778316 eV Core-core repulsion = 21049.290163 eV Total energy + Delta-G solvation = -4151.488153 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.15474 -48.65695 -48.59521 -41.58674 -39.13061 -35.94721 -35.33298 -33.26815 -32.07961 -30.49082 -27.52088 -26.85525 -25.59279 -25.16444 -22.85789 -21.33580 -20.54243 -19.71090 -19.41831 -19.36650 -18.39895 -17.87873 -17.11597 -16.68668 -16.19704 -16.04488 -15.58373 -15.50255 -15.31422 -15.03425 -14.86680 -14.81044 -14.75685 -14.71073 -14.21872 -13.88982 -13.53472 -13.47471 -13.29258 -13.09201 -13.02068 -12.91048 -12.75077 -12.60675 -12.32760 -11.95674 -11.92459 -11.57620 -11.43960 -11.11537 -10.90360 -9.78903 -8.98680 -7.92036 -5.19758 1.30424 1.41805 1.51665 1.53803 1.61836 1.89111 2.58502 2.60901 2.87030 2.95605 3.39754 3.41970 3.64253 3.76711 3.82433 3.89351 3.95234 4.14829 4.27694 4.37692 4.54544 4.61474 4.65491 4.68673 4.80231 4.84519 5.01961 5.09161 5.19104 5.22773 5.34531 5.46756 5.59316 6.29642 6.35026 6.84866 7.39258 8.11677 8.34956 9.31427 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.030704 B = 0.003865 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.725536 B = 7243.356051 C = 7633.608422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.164 4.164 3 H 0.160 0.840 4 C 0.538 3.462 5 O -0.567 6.567 6 N -0.598 5.598 7 C 0.111 3.889 8 C -0.146 4.146 9 C 0.166 3.834 10 H 0.078 0.922 11 N -0.727 5.727 12 C -0.237 4.237 13 H 0.080 0.920 14 C -0.069 4.069 15 N -0.968 5.968 16 Si 0.965 3.035 17 H -0.265 1.265 18 H -0.296 1.296 19 H -0.300 1.300 20 C 0.119 3.881 21 H 0.109 0.891 22 C -0.168 4.168 23 C 0.470 3.530 24 F -0.189 7.189 25 F -0.173 7.173 26 F -0.181 7.181 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.383 0.617 35 H 0.250 0.750 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.704 -10.526 11.076 15.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.186 4.186 3 H 0.177 0.823 4 C 0.326 3.674 5 O -0.447 6.447 6 N -0.330 5.330 7 C -0.012 4.012 8 C -0.187 4.187 9 C 0.056 3.944 10 H 0.096 0.904 11 N -0.370 5.370 12 C -0.369 4.369 13 H 0.098 0.902 14 C -0.262 4.262 15 N -0.619 5.619 16 Si 0.796 3.204 17 H -0.189 1.189 18 H -0.224 1.224 19 H -0.228 1.228 20 C 0.015 3.985 21 H 0.126 0.874 22 C -0.225 4.225 23 C 0.416 3.584 24 F -0.170 7.170 25 F -0.154 7.154 26 F -0.162 7.162 27 H 0.119 0.881 28 H 0.091 0.909 29 H 0.121 0.879 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.220 0.780 35 H 0.059 0.941 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.468 -11.102 11.050 16.289 hybrid contribution 0.540 0.765 -0.571 1.097 sum -3.928 -10.337 10.479 15.235 Atomic orbital electron populations 1.21971 0.86982 1.05040 1.06706 1.22952 1.03367 1.03461 0.88835 0.82295 1.19706 0.79044 0.84795 0.83899 1.90771 1.42855 1.24717 1.86339 1.48422 1.60726 1.18750 1.05095 1.22292 1.01468 0.95682 0.81708 1.23403 1.00487 0.95792 0.99018 1.21377 0.96915 0.84919 0.91162 0.90397 1.42861 1.62971 1.09715 1.21485 1.19671 1.25579 0.95132 0.96481 0.90180 1.25423 1.01697 0.97610 1.01460 1.69788 1.44512 1.09153 1.38397 0.85191 0.77009 0.78222 0.80017 1.18927 1.22370 1.22803 1.22088 0.97873 0.81220 0.97289 0.87393 1.22271 0.99938 0.99509 1.00818 1.20012 0.75290 0.77702 0.85432 1.93185 1.30636 1.96413 1.96794 1.93190 1.88344 1.80574 1.53335 1.93180 1.88276 1.37994 1.96757 0.88091 0.90887 0.87900 0.91296 0.89404 0.89673 0.92798 0.78003 0.94122 0.90683 0.90189 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.80 71.98 0.63 -1.64 16 2 C -0.16 -3.45 2.03 -11.54 -0.02 -3.47 16 3 H 0.16 2.83 4.93 -2.39 -0.01 2.82 16 4 C 0.54 14.85 6.66 87.66 0.58 15.43 16 5 O -0.57 -19.78 15.09 -3.04 -0.05 -19.82 16 6 N -0.60 -15.66 3.08 -788.08 -2.43 -18.08 16 7 C 0.11 2.89 6.94 86.86 0.60 3.50 16 8 C -0.15 -4.38 6.77 31.99 0.22 -4.16 16 9 C 0.17 5.37 3.49 46.18 0.16 5.53 16 10 H 0.08 2.42 8.09 -2.39 -0.02 2.40 16 11 N -0.73 -31.45 4.91 -317.33 -1.56 -33.00 16 12 C -0.24 -11.71 9.96 84.03 0.84 -10.88 16 13 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 14 C -0.07 -3.67 5.50 84.86 0.47 -3.20 16 15 N -0.97 -55.09 13.06 21.65 0.28 -54.80 16 16 Si 0.97 43.14 29.55 68.60 2.03 45.17 16 17 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 18 H -0.30 -13.37 7.11 99.48 0.71 -12.67 16 19 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 20 C 0.12 3.07 2.98 45.34 0.14 3.21 16 21 H 0.11 2.27 5.77 -2.38 -0.01 2.25 16 22 C -0.17 -4.57 8.02 71.98 0.58 -3.99 16 23 C 0.47 11.35 2.43 71.98 0.17 11.52 16 24 F -0.19 -5.37 16.57 44.97 0.74 -4.62 16 25 F -0.17 -3.63 16.69 44.97 0.75 -2.88 16 26 F -0.18 -4.90 15.84 44.97 0.71 -4.18 16 27 H 0.10 1.34 5.50 -2.38 -0.01 1.32 16 28 H 0.07 1.17 7.97 -2.39 -0.02 1.15 16 29 H 0.10 1.18 7.64 -2.39 -0.02 1.16 16 30 H 0.07 1.91 7.98 -2.39 -0.02 1.89 16 31 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 33 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.38 17.71 4.96 -92.71 -0.46 17.25 16 35 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 36 H 0.07 2.45 6.26 -2.39 -0.01 2.43 16 37 H 0.08 1.65 5.04 -2.39 -0.01 1.64 16 38 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -63.03 312.54 5.50 -57.52 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.65 Total: 22.85 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 4.36 Total: 11.85 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -3.70 Total: -105.89 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.05 Total: -19.82 kcal Atomic # 9 Polarization: -13.89 SS G_CDS: 2.21 Total: -11.69 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -63.03 5.50 -57.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074804537.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.772 kcal (2) G-P(sol) polarization free energy of solvation -63.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds