Wall clock time and date at job start Tue Mar 31 2020 07:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47330 * 2 1 4 4 C 1.50701 * 109.47309 * 120.00301 * 2 1 3 5 5 O 1.21280 * 120.00325 * 86.09442 * 4 2 1 6 6 N 1.34783 * 119.99806 * 266.09939 * 4 2 1 7 7 C 1.47416 * 125.64848 * 355.06500 * 6 4 2 8 8 C 1.54907 * 104.83127 * 204.09589 * 7 6 4 9 9 H 1.09003 * 111.00742 * 81.06247 * 8 7 6 10 10 C 1.53006 * 111.00247 * 204.91509 * 8 7 6 11 11 C 1.55154 * 101.58404 * 322.98967 * 8 7 6 12 12 H 1.09003 * 110.86925 * 277.07466 * 11 8 7 13 13 N 1.46495 * 110.72549 * 153.86705 * 11 8 7 14 14 C 1.36929 * 120.00234 * 160.02761 * 13 11 8 15 15 H 1.08001 * 120.00200 * 359.97438 * 14 13 11 16 16 C 1.38811 * 120.00281 * 180.02562 * 14 13 11 17 17 N 1.31627 * 119.99547 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00355 * 180.27289 * 16 14 13 19 19 H 1.48496 * 109.47164 * 269.72236 * 18 16 14 20 20 H 1.48503 * 109.47062 * 29.72098 * 18 16 14 21 21 H 1.48500 * 109.47562 * 149.72042 * 18 16 14 22 22 C 1.47021 * 125.64657 * 175.02305 * 6 4 2 23 23 C 1.53002 * 109.47521 * 240.00187 * 2 1 3 24 24 F 1.39897 * 109.47130 * 299.99980 * 23 2 1 25 25 F 1.39898 * 109.47072 * 60.00229 * 23 2 1 26 26 F 1.39898 * 109.47145 * 179.97438 * 23 2 1 27 27 H 1.09003 * 109.46930 * 55.33968 * 1 2 3 28 28 H 1.09003 * 109.47116 * 175.33458 * 1 2 3 29 29 H 1.08998 * 109.47442 * 295.34219 * 1 2 3 30 30 H 1.09007 * 110.36800 * 322.93399 * 7 6 4 31 31 H 1.08997 * 110.37084 * 85.14534 * 7 6 4 32 32 H 1.09002 * 109.46722 * 172.19665 * 10 8 7 33 33 H 1.09000 * 109.47388 * 292.19109 * 10 8 7 34 34 H 1.08993 * 109.46908 * 52.19703 * 10 8 7 35 35 H 0.97005 * 119.99656 * 340.02047 * 13 11 8 36 36 H 0.97003 * 119.99527 * 180.02562 * 17 16 14 37 37 H 1.09004 * 109.87791 * 59.56029 * 22 6 4 38 38 H 1.08996 * 110.01404 * 298.46646 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.1671 -1.9157 1.2223 6 7 2.3319 -0.0064 2.3400 7 6 2.3134 1.4631 2.4562 8 6 3.2809 1.7807 3.6235 9 1 4.3175 1.7674 3.2865 10 6 2.9349 3.1221 4.2731 11 6 2.9963 0.6034 4.5932 12 1 2.1182 0.8084 5.2057 13 7 4.1630 0.3332 5.4371 14 6 4.0145 -0.3582 6.6096 15 1 3.0372 -0.7040 6.9126 16 6 5.1198 -0.6138 7.4095 17 7 6.3108 -0.1919 7.0405 18 14 4.9184 -1.5635 9.0053 19 1 4.6524 -0.6145 10.1160 20 1 3.7801 -2.5088 8.8785 21 1 6.1626 -2.3225 9.2901 22 6 2.7302 -0.5768 3.6352 23 6 2.0401 -0.7212 -1.2493 24 9 1.5738 -2.0402 -1.2493 25 9 1.5738 -0.0617 -2.3915 26 9 3.4390 -0.7206 -1.2495 27 1 -0.3633 0.5845 -0.8453 28 1 -0.3633 -1.0243 -0.0836 29 1 -0.3634 0.4398 0.9287 30 1 2.6692 1.9211 1.5333 31 1 1.3076 1.8126 2.6891 32 1 3.5366 3.2564 5.1720 33 1 3.1440 3.9300 3.5719 34 1 1.8778 3.1355 4.5381 35 1 5.0407 0.6440 5.1651 36 1 7.0832 -0.3708 7.5992 37 1 3.6374 -1.1693 3.5160 38 1 1.9290 -1.2014 4.0300 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082689368.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:03 Heat of formation + Delta-G solvation = -180.290583 kcal Electronic energy + Delta-G solvation = -24736.292943 eV Core-core repulsion = 20584.891772 eV Total energy + Delta-G solvation = -4151.401171 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.19213 -47.72788 -47.57472 -40.13623 -37.82937 -34.44169 -33.91967 -32.39949 -30.77913 -27.87965 -26.68699 -26.32108 -24.42612 -23.07206 -21.52086 -20.07661 -19.52390 -18.71272 -18.47095 -17.51956 -17.06797 -16.94904 -16.05558 -15.26817 -14.81078 -14.54920 -14.45134 -14.08601 -14.03700 -13.83825 -13.74102 -13.63778 -13.58387 -13.30370 -13.26250 -12.92585 -12.71233 -12.48677 -12.28521 -12.05195 -11.62586 -11.55696 -11.21258 -11.10212 -10.81733 -10.69854 -10.31144 -10.02580 -9.87940 -9.77253 -9.03551 -8.50465 -7.12920 -5.87359 -3.18497 2.26152 2.62542 2.95754 3.38832 3.45029 3.46341 3.55147 3.87151 3.89987 4.42216 4.50350 4.59177 4.64925 4.69483 5.03124 5.11101 5.19335 5.28974 5.40267 5.45610 5.56770 5.66797 5.74420 5.78928 5.86689 6.07923 6.17883 6.30089 6.37691 6.50408 6.55654 6.82035 7.54301 7.61683 8.07072 8.29844 9.42081 9.94509 10.29130 11.34509 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.024438 B = 0.003805 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.459483 B = 7357.773344 C = 7821.407157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.161 4.161 3 H 0.130 0.870 4 C 0.529 3.471 5 O -0.522 6.522 6 N -0.604 5.604 7 C 0.100 3.900 8 C -0.113 4.113 9 H 0.086 0.914 10 C -0.134 4.134 11 C 0.177 3.823 12 H 0.067 0.933 13 N -0.710 5.710 14 C -0.250 4.250 15 H 0.073 0.927 16 C -0.007 4.007 17 N -0.929 5.929 18 Si 0.908 3.092 19 H -0.289 1.289 20 H -0.281 1.281 21 H -0.291 1.291 22 C 0.081 3.919 23 C 0.469 3.531 24 F -0.165 7.165 25 F -0.182 7.182 26 F -0.179 7.179 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.387 0.613 36 H 0.257 0.743 37 H 0.076 0.924 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.715 6.897 -15.252 20.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.183 4.183 3 H 0.148 0.852 4 C 0.314 3.686 5 O -0.398 6.398 6 N -0.337 5.337 7 C -0.023 4.023 8 C -0.133 4.133 9 H 0.105 0.895 10 C -0.192 4.192 11 C 0.065 3.935 12 H 0.085 0.915 13 N -0.350 5.350 14 C -0.381 4.381 15 H 0.091 0.909 16 C -0.203 4.203 17 N -0.576 5.576 18 Si 0.739 3.261 19 H -0.216 1.216 20 H -0.206 1.206 21 H -0.217 1.217 22 C -0.044 4.044 23 C 0.414 3.586 24 F -0.146 7.146 25 F -0.164 7.164 26 F -0.160 7.160 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.222 0.778 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.661 6.072 -15.147 20.057 hybrid contribution 0.411 -0.520 0.524 0.845 sum -11.250 5.552 -14.622 19.267 Atomic orbital electron populations 1.21747 0.88973 1.04818 1.04583 1.22626 1.01612 1.02639 0.91448 0.85179 1.19340 0.78847 0.87211 0.83197 1.90809 1.52842 1.13527 1.82668 1.48465 1.66118 1.07735 1.11406 1.22518 1.00196 0.80080 0.99496 1.22619 0.99343 0.96522 0.94787 0.89536 1.21623 1.01611 0.94870 1.01055 1.21270 0.92668 0.89673 0.89888 0.91477 1.42348 1.04695 1.66208 1.21750 1.19233 0.94016 1.28103 0.96746 0.90947 1.24765 0.95326 1.01052 0.99190 1.69662 0.98312 1.50718 1.38916 0.86181 0.76986 0.79509 0.83444 1.21588 1.20607 1.21677 1.23372 1.00447 0.99518 0.81045 1.19888 0.75746 0.78278 0.84648 1.93238 1.88142 1.36662 1.96586 1.93175 1.88553 1.80900 1.53769 1.93218 1.29644 1.96429 1.96712 0.90035 0.90354 0.89786 0.91079 0.90948 0.91158 0.93108 0.92759 0.77824 0.93304 0.90567 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.93 37.16 0.33 -0.85 16 2 C -0.16 -1.73 2.41 -91.77 -0.22 -1.95 16 3 H 0.13 1.04 6.39 -51.93 -0.33 0.71 16 4 C 0.53 8.07 6.59 -10.98 -0.07 7.99 16 5 O -0.52 -10.20 15.68 5.56 0.09 -10.11 16 6 N -0.60 -8.95 3.33 -170.53 -0.57 -9.52 16 7 C 0.10 1.13 6.03 -2.53 -0.02 1.11 16 8 C -0.11 -1.56 3.25 -88.47 -0.29 -1.85 16 9 H 0.09 1.30 8.00 -51.93 -0.42 0.89 16 10 C -0.13 -1.60 9.31 37.16 0.35 -1.26 16 11 C 0.18 3.18 3.06 -66.10 -0.20 2.98 16 12 H 0.07 1.19 8.02 -51.93 -0.42 0.78 16 13 N -0.71 -16.55 5.18 -51.66 -0.27 -16.82 16 14 C -0.25 -6.59 9.98 -15.06 -0.15 -6.74 16 15 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 16 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 17 N -0.93 -27.12 13.06 55.49 0.72 -26.39 16 18 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 C 0.08 1.47 6.62 -3.06 -0.02 1.45 16 23 C 0.47 5.86 2.56 37.16 0.10 5.96 16 24 F -0.17 -2.41 15.31 2.25 0.03 -2.37 16 25 F -0.18 -1.98 16.88 2.25 0.04 -1.94 16 26 F -0.18 -2.55 17.02 2.25 0.04 -2.51 16 27 H 0.08 0.50 7.93 -51.93 -0.41 0.08 16 28 H 0.08 0.74 7.67 -51.93 -0.40 0.34 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.63 6.86 -51.93 -0.36 0.27 16 31 H 0.07 0.66 7.99 -51.93 -0.41 0.25 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.58 8.07 -51.93 -0.42 0.16 16 35 H 0.39 9.67 7.71 -40.82 -0.31 9.35 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.08 1.63 8.03 -51.93 -0.42 1.21 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 326.96 15.07 4.93 4.93 Total: -1.00 -31.33 326.96 -5.43 -36.77 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -5.13 Total: 4.64 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -0.29 Total: 6.56 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.11 Total: -52.73 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 9 Polarization: -6.93 SS G_CDS: 0.11 Total: -6.82 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.33 -5.43 -36.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082689368.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.523 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds