Wall clock time and date at job start Tue Mar 31 2020 07:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47330 * 2 1 4 4 C 1.50701 * 109.47309 * 120.00301 * 2 1 3 5 5 O 1.21280 * 120.00325 * 86.09442 * 4 2 1 6 6 N 1.34783 * 119.99806 * 266.09939 * 4 2 1 7 7 C 1.47416 * 125.64848 * 355.06500 * 6 4 2 8 8 C 1.54907 * 104.83127 * 204.09589 * 7 6 4 9 9 H 1.09003 * 111.00742 * 81.06247 * 8 7 6 10 10 C 1.53006 * 111.00247 * 204.91509 * 8 7 6 11 11 C 1.55154 * 101.58404 * 322.98967 * 8 7 6 12 12 H 1.09003 * 110.86925 * 277.07466 * 11 8 7 13 13 N 1.46495 * 110.72549 * 153.86705 * 11 8 7 14 14 C 1.36929 * 120.00234 * 160.02761 * 13 11 8 15 15 H 1.08001 * 120.00200 * 359.97438 * 14 13 11 16 16 C 1.38811 * 120.00281 * 180.02562 * 14 13 11 17 17 N 1.31627 * 119.99547 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00355 * 180.27289 * 16 14 13 19 19 H 1.48496 * 109.47164 * 269.72236 * 18 16 14 20 20 H 1.48503 * 109.47062 * 29.72098 * 18 16 14 21 21 H 1.48500 * 109.47562 * 149.72042 * 18 16 14 22 22 C 1.47021 * 125.64657 * 175.02305 * 6 4 2 23 23 C 1.53002 * 109.47521 * 240.00187 * 2 1 3 24 24 F 1.39897 * 109.47130 * 299.99980 * 23 2 1 25 25 F 1.39898 * 109.47072 * 60.00229 * 23 2 1 26 26 F 1.39898 * 109.47145 * 179.97438 * 23 2 1 27 27 H 1.09003 * 109.46930 * 55.33968 * 1 2 3 28 28 H 1.09003 * 109.47116 * 175.33458 * 1 2 3 29 29 H 1.08998 * 109.47442 * 295.34219 * 1 2 3 30 30 H 1.09007 * 110.36800 * 322.93399 * 7 6 4 31 31 H 1.08997 * 110.37084 * 85.14534 * 7 6 4 32 32 H 1.09002 * 109.46722 * 172.19665 * 10 8 7 33 33 H 1.09000 * 109.47388 * 292.19109 * 10 8 7 34 34 H 1.08993 * 109.46908 * 52.19703 * 10 8 7 35 35 H 0.97005 * 119.99656 * 340.02047 * 13 11 8 36 36 H 0.97003 * 119.99527 * 180.02562 * 17 16 14 37 37 H 1.09004 * 109.87791 * 59.56029 * 22 6 4 38 38 H 1.08996 * 110.01404 * 298.46646 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.1671 -1.9157 1.2223 6 7 2.3319 -0.0064 2.3400 7 6 2.3134 1.4631 2.4562 8 6 3.2809 1.7807 3.6235 9 1 4.3175 1.7674 3.2865 10 6 2.9349 3.1221 4.2731 11 6 2.9963 0.6034 4.5932 12 1 2.1182 0.8084 5.2057 13 7 4.1630 0.3332 5.4371 14 6 4.0145 -0.3582 6.6096 15 1 3.0372 -0.7040 6.9126 16 6 5.1198 -0.6138 7.4095 17 7 6.3108 -0.1919 7.0405 18 14 4.9184 -1.5635 9.0053 19 1 4.6524 -0.6145 10.1160 20 1 3.7801 -2.5088 8.8785 21 1 6.1626 -2.3225 9.2901 22 6 2.7302 -0.5768 3.6352 23 6 2.0401 -0.7212 -1.2493 24 9 1.5738 -2.0402 -1.2493 25 9 1.5738 -0.0617 -2.3915 26 9 3.4390 -0.7206 -1.2495 27 1 -0.3633 0.5845 -0.8453 28 1 -0.3633 -1.0243 -0.0836 29 1 -0.3634 0.4398 0.9287 30 1 2.6692 1.9211 1.5333 31 1 1.3076 1.8126 2.6891 32 1 3.5366 3.2564 5.1720 33 1 3.1440 3.9300 3.5719 34 1 1.8778 3.1355 4.5381 35 1 5.0407 0.6440 5.1651 36 1 7.0832 -0.3708 7.5992 37 1 3.6374 -1.1693 3.5160 38 1 1.9290 -1.2014 4.0300 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082689368.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:03 Heat of formation + Delta-G solvation = -201.206039 kcal Electronic energy + Delta-G solvation = -24737.199905 eV Core-core repulsion = 20584.891772 eV Total energy + Delta-G solvation = -4152.308134 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.17860 -48.69754 -48.60987 -41.35363 -39.13344 -36.01177 -35.06454 -33.73802 -32.46283 -29.42107 -27.50393 -27.32303 -26.13987 -24.36595 -22.76348 -21.37332 -20.67359 -19.72890 -19.48596 -19.14269 -18.37611 -18.11134 -17.30470 -16.52470 -16.38365 -15.66848 -15.48933 -15.39196 -15.37699 -15.06799 -14.84513 -14.80627 -14.73217 -14.64254 -14.19028 -14.07390 -13.91618 -13.47065 -13.33783 -13.08576 -12.93329 -12.85391 -12.77565 -12.44604 -12.25548 -12.16291 -12.02655 -11.69879 -11.36621 -11.10877 -10.94048 -9.76616 -9.09080 -7.97545 -5.27181 1.18198 1.46709 1.48658 1.54165 1.56661 1.88491 2.54304 2.62019 2.91112 2.95501 3.34045 3.48406 3.55623 3.76577 3.81440 3.91297 3.99811 4.25968 4.32295 4.43646 4.61407 4.62703 4.66896 4.69332 4.89646 4.92820 5.09406 5.10634 5.16065 5.21667 5.38707 5.51552 5.55913 6.24122 6.37958 6.88401 7.31330 8.03848 8.26203 9.25396 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.024438 B = 0.003805 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.459483 B = 7357.773344 C = 7821.407157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.146 4.146 3 H 0.170 0.830 4 C 0.522 3.478 5 O -0.576 6.576 6 N -0.603 5.603 7 C 0.102 3.898 8 C -0.106 4.106 9 H 0.070 0.930 10 C -0.127 4.127 11 C 0.171 3.829 12 H 0.074 0.926 13 N -0.723 5.723 14 C -0.245 4.245 15 H 0.078 0.922 16 C -0.069 4.069 17 N -0.967 5.967 18 Si 0.969 3.031 19 H -0.283 1.283 20 H -0.272 1.272 21 H -0.299 1.299 22 C 0.092 3.908 23 C 0.463 3.537 24 F -0.182 7.182 25 F -0.169 7.169 26 F -0.193 7.193 27 H 0.111 0.889 28 H 0.060 0.940 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.039 0.961 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.375 0.625 36 H 0.251 0.749 37 H 0.032 0.968 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.047 9.118 -16.426 23.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.168 4.168 3 H 0.187 0.813 4 C 0.310 3.690 5 O -0.456 6.456 6 N -0.335 5.335 7 C -0.019 4.019 8 C -0.126 4.126 9 H 0.088 0.912 10 C -0.184 4.184 11 C 0.061 3.939 12 H 0.092 0.908 13 N -0.362 5.362 14 C -0.376 4.376 15 H 0.096 0.904 16 C -0.262 4.262 17 N -0.617 5.617 18 Si 0.798 3.202 19 H -0.210 1.210 20 H -0.197 1.197 21 H -0.226 1.226 22 C -0.034 4.034 23 C 0.409 3.591 24 F -0.164 7.164 25 F -0.151 7.151 26 F -0.175 7.175 27 H 0.130 0.870 28 H 0.079 0.921 29 H 0.120 0.880 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.208 0.792 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.056 8.333 -16.351 23.116 hybrid contribution 1.087 -1.212 0.802 1.815 sum -12.969 7.122 -15.548 21.463 Atomic orbital electron populations 1.21853 0.86612 1.04578 1.06863 1.22697 1.03263 1.03282 0.87599 0.81272 1.20152 0.77789 0.86833 0.84222 1.90787 1.54955 1.16160 1.83683 1.48488 1.65537 1.09398 1.10071 1.22830 1.01567 0.77539 0.99982 1.22559 0.99495 0.95809 0.94705 0.91179 1.21576 1.02145 0.94394 1.00326 1.21506 0.91023 0.91355 0.90042 0.90766 1.42497 1.05821 1.66013 1.21836 1.19616 0.93981 1.26724 0.97305 0.90432 1.25511 0.95267 1.02933 1.02481 1.69808 0.98875 1.52871 1.40137 0.85216 0.76555 0.78330 0.80120 1.20951 1.19715 1.22590 1.22885 0.98189 0.99046 0.83300 1.20216 0.75132 0.77894 0.85888 1.93206 1.88253 1.38197 1.96735 1.93198 1.88266 1.80415 1.53174 1.93191 1.30974 1.96455 1.96851 0.87038 0.92108 0.88012 0.87286 0.87205 0.94229 0.89993 0.90888 0.79241 0.93999 0.94927 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.93 71.98 0.64 -1.13 16 2 C -0.15 -2.67 2.41 -11.54 -0.03 -2.69 16 3 H 0.17 1.72 6.39 -2.39 -0.02 1.70 16 4 C 0.52 15.18 6.59 87.66 0.58 15.76 16 5 O -0.58 -22.89 15.68 -3.03 -0.05 -22.94 16 6 N -0.60 -16.75 3.33 -811.81 -2.70 -19.45 16 7 C 0.10 1.84 6.03 86.86 0.52 2.36 16 8 C -0.11 -2.70 3.25 -9.40 -0.03 -2.73 16 9 H 0.07 2.04 8.00 -2.39 -0.02 2.02 16 10 C -0.13 -2.63 9.31 71.98 0.67 -1.96 16 11 C 0.17 6.07 3.06 46.18 0.14 6.21 16 12 H 0.07 2.54 8.02 -2.39 -0.02 2.52 16 13 N -0.72 -34.49 5.18 -317.34 -1.64 -36.14 16 14 C -0.24 -13.09 9.98 84.03 0.84 -12.26 16 15 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 16 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 17 N -0.97 -58.21 13.06 21.65 0.28 -57.93 16 18 Si 0.97 45.58 29.55 68.60 2.03 47.61 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 21 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 22 C 0.09 3.38 6.62 86.73 0.57 3.95 16 23 C 0.46 10.70 2.56 71.98 0.18 10.88 16 24 F -0.18 -5.25 15.31 44.97 0.69 -4.57 16 25 F -0.17 -3.17 16.88 44.97 0.76 -2.41 16 26 F -0.19 -5.31 17.02 44.97 0.77 -4.55 16 27 H 0.11 0.78 7.93 -2.39 -0.02 0.76 16 28 H 0.06 1.01 7.67 -2.39 -0.02 0.99 16 29 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.11 1.24 6.86 -2.38 -0.02 1.23 16 31 H 0.11 1.29 7.99 -2.39 -0.02 1.27 16 32 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 1.25 8.07 -2.39 -0.02 1.23 16 35 H 0.38 19.45 7.71 -92.70 -0.72 18.73 16 36 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 37 H 0.03 1.47 8.03 -2.39 -0.02 1.45 16 38 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -72.93 326.96 5.06 -67.87 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.37 Total: 17.52 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: 4.56 Total: 14.97 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -4.06 Total: -113.51 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.05 Total: -22.94 kcal Atomic # 9 Polarization: -13.74 SS G_CDS: 2.21 Total: -11.52 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -72.93 5.06 -67.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082689368.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.337 kcal (2) G-P(sol) polarization free energy of solvation -72.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds