Wall clock time and date at job start Tue Mar 31 2020 07:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46793 * 2 1 4 4 C 1.50702 * 109.47366 * 240.00218 * 2 1 3 5 5 O 1.21281 * 119.99554 * 275.00452 * 4 2 1 6 6 N 1.34777 * 119.99956 * 94.99705 * 4 2 1 7 7 C 1.47029 * 125.64416 * 174.96624 * 6 4 2 8 8 C 1.54325 * 107.26654 * 178.96661 * 7 6 4 9 9 H 1.08990 * 110.87469 * 96.24472 * 8 7 6 10 10 C 1.53001 * 110.71737 * 219.44622 * 8 7 6 11 11 C 1.55154 * 102.94390 * 337.80464 * 8 7 6 12 12 H 1.09000 * 111.00689 * 277.39353 * 11 8 7 13 13 N 1.46504 * 111.00525 * 153.57745 * 11 8 7 14 14 C 1.36934 * 120.00204 * 155.00196 * 13 11 8 15 15 H 1.08001 * 119.99866 * 0.02562 * 14 13 11 16 16 C 1.38814 * 120.00053 * 180.02562 * 14 13 11 17 17 N 1.31614 * 119.99759 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99897 * 180.27332 * 16 14 13 19 19 H 1.48495 * 109.47278 * 269.72650 * 18 16 14 20 20 H 1.48501 * 109.47213 * 29.72981 * 18 16 14 21 21 H 1.48504 * 109.46941 * 149.72487 * 18 16 14 22 22 C 1.47420 * 125.65015 * 354.99534 * 6 4 2 23 23 C 1.52999 * 109.47296 * 119.99866 * 2 1 3 24 24 F 1.39907 * 109.46935 * 179.97438 * 23 2 1 25 25 F 1.39899 * 109.47253 * 299.99893 * 23 2 1 26 26 F 1.39897 * 109.47110 * 60.00272 * 23 2 1 27 27 H 1.09006 * 109.47424 * 64.99528 * 1 2 3 28 28 H 1.09008 * 109.46923 * 184.99392 * 1 2 3 29 29 H 1.08993 * 109.47205 * 304.98995 * 1 2 3 30 30 H 1.08997 * 109.88116 * 59.54972 * 7 6 4 31 31 H 1.08997 * 110.01138 * 298.45219 * 7 6 4 32 32 H 1.09003 * 109.47345 * 173.52219 * 10 8 7 33 33 H 1.09002 * 109.47171 * 293.52375 * 10 8 7 34 34 H 1.09001 * 109.47382 * 53.51880 * 10 8 7 35 35 H 0.97000 * 119.99598 * 335.00829 * 13 11 8 36 36 H 0.97003 * 120.00106 * 179.97438 * 17 16 14 37 37 H 1.09001 * 110.36885 * 85.27034 * 22 6 4 38 38 H 1.08995 * 110.36558 * 322.94462 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.1481 -1.9176 -1.2289 6 7 2.3529 -0.0040 -2.3327 7 6 2.9499 -0.5535 -3.5589 8 6 3.1137 0.6160 -4.5524 9 1 4.1234 1.0241 -4.5087 10 6 2.7738 0.1689 -5.9756 11 6 2.0796 1.6537 -4.0413 12 1 1.0806 1.4252 -4.4127 13 7 2.4753 3.0151 -4.4104 14 6 1.5268 3.9955 -4.5292 15 1 0.4868 3.7652 -4.3504 16 6 1.9017 5.2853 -4.8794 17 7 3.1691 5.5660 -5.0967 18 14 0.6086 6.6244 -5.0340 19 1 0.1026 6.6652 -6.4295 20 1 -0.5159 6.3359 -4.1079 21 1 1.2111 7.9367 -4.6873 22 6 2.1635 1.4474 -2.5083 23 6 2.0400 -0.7212 1.2492 24 9 3.4391 -0.7217 1.2489 25 9 1.5737 -0.0617 2.3915 26 9 1.5738 -2.0402 1.2492 27 1 -0.3634 0.4344 -0.9314 28 1 -0.3633 -1.0238 0.0895 29 1 -0.3633 0.5893 0.8419 30 1 2.2921 -1.3116 -3.9839 31 1 3.9235 -0.9901 -3.3365 32 1 2.7841 1.0328 -6.6401 33 1 3.5117 -0.5586 -6.3139 34 1 1.7834 -0.2863 -5.9867 35 1 3.4094 3.2220 -4.5707 36 1 3.4311 6.4673 -5.3418 37 1 3.0132 1.9932 -2.0981 38 1 1.2382 1.7697 -2.0309 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082689369.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:06 Heat of formation + Delta-G solvation = -182.927935 kcal Electronic energy + Delta-G solvation = -24809.505701 eV Core-core repulsion = 20657.990165 eV Total energy + Delta-G solvation = -4151.515535 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.15529 -47.68644 -47.54828 -40.15416 -37.82966 -34.30773 -34.07621 -32.40048 -30.81287 -27.69623 -26.77617 -26.45885 -24.16642 -23.16647 -21.55178 -20.03987 -19.57803 -18.67662 -18.42025 -17.48663 -17.17726 -16.89299 -15.91917 -15.24940 -14.92077 -14.48757 -14.45129 -14.14304 -14.03877 -13.79546 -13.71262 -13.70701 -13.38553 -13.21764 -13.09277 -12.99613 -12.88597 -12.50682 -12.10864 -11.95507 -11.73301 -11.55345 -11.19992 -11.08476 -10.81555 -10.71019 -10.33001 -10.06699 -9.97985 -9.80651 -9.11839 -8.53945 -7.19633 -5.94338 -3.25877 2.25527 2.63928 2.97332 3.33252 3.38998 3.40741 3.60554 3.94008 3.95921 4.41129 4.50822 4.69263 4.79756 4.88937 5.00971 5.12824 5.30583 5.40405 5.44819 5.53012 5.61696 5.73207 5.76915 5.83178 5.91805 6.10504 6.12250 6.22529 6.35222 6.35659 6.53285 6.74458 7.51199 7.54734 8.02341 8.22733 9.35055 9.87424 10.22324 11.27328 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.018090 B = 0.004334 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.437191 B = 6459.017338 C = 7402.024913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.160 4.160 3 H 0.134 0.866 4 C 0.534 3.466 5 O -0.532 6.532 6 N -0.605 5.605 7 C 0.117 3.883 8 C -0.115 4.115 9 H 0.085 0.915 10 C -0.134 4.134 11 C 0.179 3.821 12 H 0.070 0.930 13 N -0.708 5.708 14 C -0.252 4.252 15 H 0.073 0.927 16 C -0.005 4.005 17 N -0.928 5.928 18 Si 0.908 3.092 19 H -0.288 1.288 20 H -0.281 1.281 21 H -0.291 1.291 22 C 0.063 3.937 23 C 0.471 3.529 24 F -0.180 7.180 25 F -0.181 7.181 26 F -0.166 7.166 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.388 0.612 36 H 0.258 0.742 37 H 0.074 0.926 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.747 -11.040 8.114 13.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.182 4.182 3 H 0.152 0.848 4 C 0.320 3.680 5 O -0.409 6.409 6 N -0.337 5.337 7 C -0.006 4.006 8 C -0.135 4.135 9 H 0.104 0.896 10 C -0.192 4.192 11 C 0.066 3.934 12 H 0.088 0.912 13 N -0.348 5.348 14 C -0.383 4.383 15 H 0.091 0.909 16 C -0.202 4.202 17 N -0.575 5.575 18 Si 0.738 3.262 19 H -0.215 1.215 20 H -0.206 1.206 21 H -0.217 1.217 22 C -0.062 4.062 23 C 0.416 3.584 24 F -0.162 7.162 25 F -0.162 7.162 26 F -0.148 7.148 27 H 0.104 0.896 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.222 0.778 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.827 -11.587 8.170 14.456 hybrid contribution -0.169 0.965 0.178 0.996 sum -2.997 -10.622 8.348 13.838 Atomic orbital electron populations 1.21772 0.88921 1.04609 1.04975 1.22576 1.01725 1.02871 0.91066 0.84820 1.19339 0.78457 0.86939 0.83310 1.90770 1.53924 1.13237 1.83010 1.48419 1.60640 1.10528 1.14145 1.22040 0.97966 0.96637 0.83935 1.22543 1.01350 0.95096 0.94528 0.89627 1.21662 1.00666 1.01421 0.95416 1.21344 0.96550 0.86110 0.89400 0.91160 1.42304 1.08016 1.03187 1.81264 1.19231 0.89489 0.88881 1.40711 0.90940 1.24765 0.96165 0.97586 1.01712 1.69653 1.14519 1.20356 1.52927 0.86194 0.80517 0.81580 0.77870 1.21547 1.20630 1.21673 1.23704 1.01555 0.77953 1.03014 1.19873 0.75622 0.78134 0.84786 1.93205 1.29779 1.96439 1.96742 1.93183 1.88512 1.80881 1.53623 1.93227 1.88172 1.36752 1.96618 0.89579 0.90458 0.89921 0.91297 0.91696 0.91226 0.93151 0.92881 0.77784 0.93233 0.90807 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.93 37.16 0.33 -1.12 16 2 C -0.16 -1.94 2.15 -91.77 -0.20 -2.14 16 3 H 0.13 1.44 7.13 -51.93 -0.37 1.07 16 4 C 0.53 8.04 6.58 -10.98 -0.07 7.97 16 5 O -0.53 -9.56 15.70 5.56 0.09 -9.47 16 6 N -0.60 -8.87 3.33 -170.52 -0.57 -9.44 16 7 C 0.12 1.64 6.47 -3.06 -0.02 1.62 16 8 C -0.12 -1.68 3.20 -88.79 -0.28 -1.96 16 9 H 0.09 1.29 8.00 -51.93 -0.42 0.87 16 10 C -0.13 -1.79 9.16 37.16 0.34 -1.45 16 11 C 0.18 3.06 3.16 -65.78 -0.21 2.85 16 12 H 0.07 1.23 8.00 -51.93 -0.42 0.82 16 13 N -0.71 -15.56 5.24 -51.35 -0.27 -15.82 16 14 C -0.25 -6.28 9.96 -15.06 -0.15 -6.43 16 15 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 16 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 17 N -0.93 -26.02 13.06 55.49 0.72 -25.29 16 18 Si 0.91 20.83 29.55 -169.99 -5.02 15.80 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 C 0.06 0.97 5.86 -2.53 -0.01 0.95 16 23 C 0.47 6.16 2.57 37.16 0.10 6.26 16 24 F -0.18 -2.59 17.02 2.25 0.04 -2.56 16 25 F -0.18 -2.16 16.89 2.25 0.04 -2.12 16 26 F -0.17 -2.41 15.30 2.25 0.03 -2.38 16 27 H 0.09 0.83 7.98 -51.93 -0.41 0.41 16 28 H 0.08 0.80 7.66 -51.92 -0.40 0.40 16 29 H 0.08 0.68 7.94 -51.93 -0.41 0.26 16 30 H 0.07 0.94 7.76 -51.93 -0.40 0.54 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.67 8.06 -51.93 -0.42 0.25 16 35 H 0.39 9.18 7.76 -40.82 -0.32 8.86 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.07 1.03 7.51 -51.93 -0.39 0.64 16 LS Contribution 327.48 15.07 4.94 4.94 Total: -1.00 -28.86 327.48 -5.47 -34.32 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.19 Total: 5.71 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -0.27 Total: 6.31 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: -0.11 Total: -50.56 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 9 Polarization: -7.17 SS G_CDS: 0.11 Total: -7.05 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.86 -5.47 -34.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082689369.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.603 kcal (2) G-P(sol) polarization free energy of solvation -28.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds