Wall clock time and date at job start Tue Mar 31 2020 07:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46793 * 2 1 4 4 C 1.50702 * 109.47366 * 240.00218 * 2 1 3 5 5 O 1.21281 * 119.99554 * 275.00452 * 4 2 1 6 6 N 1.34777 * 119.99956 * 94.99705 * 4 2 1 7 7 C 1.47029 * 125.64416 * 174.96624 * 6 4 2 8 8 C 1.54325 * 107.26654 * 178.96661 * 7 6 4 9 9 H 1.08990 * 110.87469 * 96.24472 * 8 7 6 10 10 C 1.53001 * 110.71737 * 219.44622 * 8 7 6 11 11 C 1.55154 * 102.94390 * 337.80464 * 8 7 6 12 12 H 1.09000 * 111.00689 * 277.39353 * 11 8 7 13 13 N 1.46504 * 111.00525 * 153.57745 * 11 8 7 14 14 C 1.36934 * 120.00204 * 155.00196 * 13 11 8 15 15 H 1.08001 * 119.99866 * 0.02562 * 14 13 11 16 16 C 1.38814 * 120.00053 * 180.02562 * 14 13 11 17 17 N 1.31614 * 119.99759 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99897 * 180.27332 * 16 14 13 19 19 H 1.48495 * 109.47278 * 269.72650 * 18 16 14 20 20 H 1.48501 * 109.47213 * 29.72981 * 18 16 14 21 21 H 1.48504 * 109.46941 * 149.72487 * 18 16 14 22 22 C 1.47420 * 125.65015 * 354.99534 * 6 4 2 23 23 C 1.52999 * 109.47296 * 119.99866 * 2 1 3 24 24 F 1.39907 * 109.46935 * 179.97438 * 23 2 1 25 25 F 1.39899 * 109.47253 * 299.99893 * 23 2 1 26 26 F 1.39897 * 109.47110 * 60.00272 * 23 2 1 27 27 H 1.09006 * 109.47424 * 64.99528 * 1 2 3 28 28 H 1.09008 * 109.46923 * 184.99392 * 1 2 3 29 29 H 1.08993 * 109.47205 * 304.98995 * 1 2 3 30 30 H 1.08997 * 109.88116 * 59.54972 * 7 6 4 31 31 H 1.08997 * 110.01138 * 298.45219 * 7 6 4 32 32 H 1.09003 * 109.47345 * 173.52219 * 10 8 7 33 33 H 1.09002 * 109.47171 * 293.52375 * 10 8 7 34 34 H 1.09001 * 109.47382 * 53.51880 * 10 8 7 35 35 H 0.97000 * 119.99598 * 335.00829 * 13 11 8 36 36 H 0.97003 * 120.00106 * 179.97438 * 17 16 14 37 37 H 1.09001 * 110.36885 * 85.27034 * 22 6 4 38 38 H 1.08995 * 110.36558 * 322.94462 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.1481 -1.9176 -1.2289 6 7 2.3529 -0.0040 -2.3327 7 6 2.9499 -0.5535 -3.5589 8 6 3.1137 0.6160 -4.5524 9 1 4.1234 1.0241 -4.5087 10 6 2.7738 0.1689 -5.9756 11 6 2.0796 1.6537 -4.0413 12 1 1.0806 1.4252 -4.4127 13 7 2.4753 3.0151 -4.4104 14 6 1.5268 3.9955 -4.5292 15 1 0.4868 3.7652 -4.3504 16 6 1.9017 5.2853 -4.8794 17 7 3.1691 5.5660 -5.0967 18 14 0.6086 6.6244 -5.0340 19 1 0.1026 6.6652 -6.4295 20 1 -0.5159 6.3359 -4.1079 21 1 1.2111 7.9367 -4.6873 22 6 2.1635 1.4474 -2.5083 23 6 2.0400 -0.7212 1.2492 24 9 3.4391 -0.7217 1.2489 25 9 1.5737 -0.0617 2.3915 26 9 1.5738 -2.0402 1.2492 27 1 -0.3634 0.4344 -0.9314 28 1 -0.3633 -1.0238 0.0895 29 1 -0.3633 0.5893 0.8419 30 1 2.2921 -1.3116 -3.9839 31 1 3.9235 -0.9901 -3.3365 32 1 2.7841 1.0328 -6.6401 33 1 3.5117 -0.5586 -6.3139 34 1 1.7834 -0.2863 -5.9867 35 1 3.4094 3.2220 -4.5707 36 1 3.4311 6.4673 -5.3418 37 1 3.0132 1.9932 -2.0981 38 1 1.2382 1.7697 -2.0309 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082689369.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:06 Heat of formation + Delta-G solvation = -200.179519 kcal Electronic energy + Delta-G solvation = -24810.253785 eV Core-core repulsion = 20657.990165 eV Total energy + Delta-G solvation = -4152.263620 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.19947 -48.72021 -48.62092 -41.37232 -39.12469 -35.88863 -35.21278 -33.72209 -32.45417 -29.18182 -27.80479 -27.47223 -25.87659 -24.32127 -22.87953 -21.34535 -20.71339 -19.74053 -19.47683 -19.13384 -18.43475 -18.06691 -17.22264 -16.56654 -16.24667 -15.82250 -15.55171 -15.37591 -15.28005 -15.09045 -14.84432 -14.76905 -14.60709 -14.51702 -14.36183 -14.19855 -14.04848 -13.56729 -13.15533 -13.06317 -13.02067 -12.86524 -12.81168 -12.48829 -12.21890 -12.10260 -11.98801 -11.69718 -11.40748 -11.14383 -10.90128 -9.78808 -9.02534 -7.91978 -5.21457 1.13575 1.51743 1.53371 1.55184 1.61576 1.87249 2.57933 2.60065 2.86925 2.93627 3.37777 3.40523 3.68931 3.75968 3.82508 3.88274 3.94142 4.18378 4.36474 4.46603 4.54111 4.59127 4.62292 4.68092 4.86153 4.89177 5.03908 5.06996 5.13063 5.15865 5.34576 5.47068 5.58631 6.28188 6.31746 6.83569 7.37205 8.08149 8.31906 9.30794 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.018090 B = 0.004334 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.437191 B = 6459.017338 C = 7402.024913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.156 4.156 3 H 0.151 0.849 4 C 0.532 3.468 5 O -0.563 6.563 6 N -0.603 5.603 7 C 0.118 3.882 8 C -0.105 4.105 9 H 0.079 0.921 10 C -0.129 4.129 11 C 0.172 3.828 12 H 0.070 0.930 13 N -0.719 5.719 14 C -0.240 4.240 15 H 0.082 0.918 16 C -0.067 4.067 17 N -0.966 5.966 18 Si 0.965 3.035 19 H -0.291 1.291 20 H -0.266 1.266 21 H -0.301 1.301 22 C 0.076 3.924 23 C 0.469 3.531 24 F -0.190 7.190 25 F -0.172 7.172 26 F -0.176 7.176 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.377 0.623 36 H 0.250 0.750 37 H 0.067 0.933 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.021 -11.566 8.752 15.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.178 4.178 3 H 0.168 0.832 4 C 0.320 3.680 5 O -0.442 6.442 6 N -0.335 5.335 7 C -0.004 4.004 8 C -0.125 4.125 9 H 0.097 0.903 10 C -0.187 4.187 11 C 0.061 3.939 12 H 0.088 0.912 13 N -0.357 5.357 14 C -0.371 4.371 15 H 0.100 0.900 16 C -0.260 4.260 17 N -0.617 5.617 18 Si 0.795 3.205 19 H -0.219 1.219 20 H -0.191 1.191 21 H -0.228 1.228 22 C -0.050 4.050 23 C 0.415 3.585 24 F -0.172 7.172 25 F -0.153 7.153 26 F -0.158 7.158 27 H 0.111 0.889 28 H 0.091 0.909 29 H 0.123 0.877 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.209 0.791 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.136 -12.155 8.828 15.581 hybrid contribution 0.228 1.010 0.000 1.035 sum -3.907 -11.145 8.828 14.745 Atomic orbital electron populations 1.21837 0.87034 1.04881 1.06284 1.22646 1.03183 1.02964 0.89002 0.83174 1.19774 0.77729 0.86647 0.83887 1.90759 1.55240 1.14638 1.83584 1.48420 1.60462 1.10171 1.14464 1.22055 0.98448 0.96353 0.83562 1.22443 1.00176 0.94440 0.95477 0.90251 1.21619 1.01941 1.01072 0.94037 1.21506 0.97195 0.84444 0.90727 0.91167 1.42399 1.07013 1.04620 1.81691 1.19616 0.90331 0.89270 1.37897 0.90006 1.25452 0.97627 0.99783 1.03099 1.69796 1.16280 1.20153 1.55432 0.85264 0.78771 0.78763 0.77683 1.21868 1.19083 1.22831 1.23398 1.02099 0.78237 1.01235 1.20018 0.75168 0.77874 0.85465 1.93186 1.30699 1.96461 1.96830 1.93199 1.88325 1.80593 1.53232 1.93208 1.88226 1.37624 1.96706 0.88940 0.90930 0.87750 0.90541 0.91223 0.93326 0.91044 0.91957 0.79082 0.94098 0.91483 0.89423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.93 71.98 0.64 -1.81 16 2 C -0.16 -3.43 2.15 -11.54 -0.02 -3.45 16 3 H 0.15 2.80 7.13 -2.39 -0.02 2.78 16 4 C 0.53 15.05 6.58 87.66 0.58 15.62 16 5 O -0.56 -19.48 15.70 -3.03 -0.05 -19.52 16 6 N -0.60 -16.49 3.33 -811.79 -2.70 -19.19 16 7 C 0.12 3.09 6.47 86.73 0.56 3.65 16 8 C -0.11 -2.92 3.20 -9.61 -0.03 -2.95 16 9 H 0.08 2.33 8.00 -2.39 -0.02 2.31 16 10 C -0.13 -3.24 9.16 71.98 0.66 -2.58 16 11 C 0.17 5.64 3.16 46.38 0.15 5.78 16 12 H 0.07 2.33 8.00 -2.39 -0.02 2.31 16 13 N -0.72 -31.13 5.24 -316.37 -1.66 -32.79 16 14 C -0.24 -11.69 9.96 84.03 0.84 -10.85 16 15 H 0.08 3.78 7.83 -2.91 -0.02 3.75 16 16 C -0.07 -3.50 5.50 84.86 0.47 -3.03 16 17 N -0.97 -54.94 13.06 21.65 0.28 -54.66 16 18 Si 0.97 42.59 29.55 68.60 2.03 44.62 16 19 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 20 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 21 H -0.30 -13.70 7.11 99.48 0.71 -13.00 16 22 C 0.08 2.15 5.86 86.86 0.51 2.66 16 23 C 0.47 11.50 2.57 71.98 0.19 11.68 16 24 F -0.19 -5.25 17.02 44.97 0.77 -4.49 16 25 F -0.17 -3.75 16.89 44.97 0.76 -2.99 16 26 F -0.18 -4.90 15.30 44.97 0.69 -4.21 16 27 H 0.09 1.49 7.98 -2.38 -0.02 1.47 16 28 H 0.07 1.33 7.66 -2.38 -0.02 1.32 16 29 H 0.10 1.35 7.94 -2.39 -0.02 1.33 16 30 H 0.08 1.92 7.76 -2.39 -0.02 1.90 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 1.44 8.06 -2.39 -0.02 1.42 16 35 H 0.38 17.95 7.76 -92.71 -0.72 17.23 16 36 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 37 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.09 2.23 7.51 -2.39 -0.02 2.22 16 Total: -1.00 -60.98 327.48 5.01 -55.97 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.36 Total: 22.55 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 4.53 Total: 14.72 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -4.08 Total: -106.64 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.05 Total: -19.52 kcal Atomic # 9 Polarization: -13.91 SS G_CDS: 2.21 Total: -11.69 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -60.98 5.01 -55.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082689369.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.206 kcal (2) G-P(sol) polarization free energy of solvation -60.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds