Wall clock time and date at job start Tue Mar 31 2020 07:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47413 * 2 1 4 4 C 1.50706 * 109.47305 * 239.99679 * 2 1 3 5 5 O 1.21276 * 120.00149 * 240.00111 * 4 2 1 6 6 N 1.34771 * 119.99616 * 60.00233 * 4 2 1 7 7 C 1.46501 * 120.00020 * 180.02562 * 6 4 2 8 8 C 1.52993 * 109.47405 * 179.97438 * 7 6 4 9 9 C 1.53781 * 113.61492 * 174.99701 * 8 7 6 10 10 C 1.53781 * 87.08070 * 140.06794 * 9 8 7 11 11 N 1.46506 * 113.61361 * 89.11956 * 10 9 8 12 12 C 1.36932 * 119.99948 * 156.53166 * 11 10 9 13 13 H 1.08003 * 120.00194 * 359.97438 * 12 11 10 14 14 C 1.38815 * 119.99870 * 179.97438 * 12 11 10 15 15 N 1.31619 * 119.99865 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 120.00043 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47266 * 89.99689 * 16 14 12 18 18 H 1.48502 * 109.46703 * 209.99822 * 16 14 12 19 19 H 1.48500 * 109.46754 * 329.99754 * 16 14 12 20 20 C 1.53773 * 87.17302 * 334.52628 * 10 9 8 21 21 C 1.53001 * 109.47207 * 119.99864 * 2 1 3 22 22 F 1.39900 * 109.47498 * 180.02562 * 21 2 1 23 23 F 1.39904 * 109.47214 * 300.00455 * 21 2 1 24 24 F 1.39906 * 109.47215 * 60.00121 * 21 2 1 25 25 H 1.08994 * 109.47292 * 299.99874 * 1 2 3 26 26 H 1.09003 * 109.46948 * 60.00585 * 1 2 3 27 27 H 1.09002 * 109.47188 * 180.02562 * 1 2 3 28 28 H 0.96997 * 120.00572 * 359.97438 * 6 4 2 29 29 H 1.09002 * 109.46995 * 59.99707 * 7 6 4 30 30 H 1.08998 * 109.46746 * 299.99904 * 7 6 4 31 31 H 1.08998 * 112.84975 * 43.80400 * 8 7 6 32 32 H 1.09001 * 113.61537 * 25.52248 * 9 8 7 33 33 H 1.08998 * 113.61680 * 254.61401 * 9 8 7 34 34 H 1.09002 * 113.61408 * 219.93560 * 10 9 8 35 35 H 0.96997 * 119.99707 * 336.52824 * 11 10 9 36 36 H 0.97001 * 119.99982 * 180.02562 * 15 14 12 37 37 H 1.09007 * 113.61678 * 140.01927 * 20 10 9 38 38 H 1.09000 * 113.61916 * 270.92600 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.1947 -0.9410 -3.6507 8 6 1.6844 -0.2201 -4.8999 9 6 2.2406 -0.7949 -6.2133 10 6 0.8359 -0.5918 -6.8054 11 7 0.6384 0.7289 -7.4079 12 6 -0.3233 0.9073 -8.3662 13 1 -0.9360 0.0743 -8.6782 14 6 -0.5109 2.1588 -8.9368 15 7 -1.4349 2.3302 -9.8583 16 14 0.5492 3.5994 -8.3978 17 1 1.7631 3.6670 -9.2504 18 1 -0.2228 4.8605 -8.5347 19 1 0.9499 3.4157 -6.9797 20 6 0.2978 -0.7003 -5.3690 21 6 2.0400 -0.7212 1.2493 22 9 3.4390 -0.7207 1.2496 23 9 1.5736 -0.0618 2.3916 24 9 1.5737 -2.0403 1.2493 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.1489 0.5384 -2.5436 29 1 1.8310 -1.9685 -3.6505 30 1 3.2847 -0.9414 -3.6508 31 1 1.7693 0.8642 -4.8273 32 1 2.5368 -1.8414 -6.1411 33 1 3.0038 -0.1688 -6.6754 34 1 0.5140 -1.4058 -7.4549 35 1 1.1888 1.4769 -7.1280 36 1 -1.5657 3.2046 -10.2572 37 1 -0.5063 0.0022 -5.1496 38 1 0.0639 -1.7209 -5.0662 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100580231.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:38 Heat of formation + Delta-G solvation = -164.824707 kcal Electronic energy + Delta-G solvation = -23843.712593 eV Core-core repulsion = 19692.982072 eV Total energy + Delta-G solvation = -4150.730521 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.33899 -47.86078 -47.73998 -40.23966 -38.78240 -35.01819 -34.43477 -33.23682 -30.73210 -27.83212 -26.83528 -25.27397 -24.12035 -23.16321 -21.83111 -20.75761 -19.13536 -18.74602 -18.55820 -17.97071 -17.65023 -16.94474 -16.07024 -15.65183 -15.17310 -14.75976 -14.67970 -14.47393 -14.26004 -14.19600 -13.95611 -13.89141 -13.75567 -13.64351 -13.49705 -12.98562 -12.80752 -12.59581 -12.39602 -12.13356 -11.83220 -11.66150 -11.44413 -10.98247 -10.60123 -10.45773 -10.26236 -10.04675 -9.74734 -9.62544 -9.27813 -8.98471 -7.37812 -5.86263 -3.22940 2.17855 2.24561 2.77633 3.27524 3.31485 3.36772 3.37631 3.69131 3.81969 4.32029 4.41029 4.49307 4.53518 4.80175 4.81928 4.97488 4.99908 5.11843 5.31685 5.33095 5.39667 5.50843 5.65687 5.74211 5.80506 6.03808 6.10442 6.15251 6.39503 6.53069 6.63474 6.80640 7.11852 7.79990 7.91343 8.33330 9.10823 9.82897 10.01861 11.31817 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.027818 B = 0.002982 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.292463 B = 9386.071003 C = 9726.523832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.164 4.164 3 H 0.139 0.861 4 C 0.519 3.481 5 O -0.524 6.524 6 N -0.715 5.715 7 C 0.130 3.870 8 C -0.124 4.124 9 C -0.148 4.148 10 C 0.172 3.828 11 N -0.730 5.730 12 C -0.248 4.248 13 H 0.092 0.908 14 C 0.006 3.994 15 N -0.931 5.931 16 Si 0.885 3.115 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.278 1.278 20 C -0.167 4.167 21 C 0.473 3.527 22 F -0.174 7.174 23 F -0.182 7.182 24 F -0.171 7.171 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.404 0.596 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.362 0.638 36 H 0.261 0.739 37 H 0.069 0.931 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.049 -4.059 21.936 23.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.187 4.187 3 H 0.157 0.843 4 C 0.302 3.698 5 O -0.400 6.400 6 N -0.366 5.366 7 C 0.008 3.992 8 C -0.143 4.143 9 C -0.187 4.187 10 C 0.061 3.939 11 N -0.370 5.370 12 C -0.378 4.378 13 H 0.110 0.890 14 C -0.190 4.190 15 N -0.578 5.578 16 Si 0.715 3.285 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.205 1.205 20 C -0.207 4.207 21 C 0.419 3.581 22 F -0.155 7.155 23 F -0.164 7.164 24 F -0.153 7.153 25 H 0.102 0.898 26 H 0.106 0.894 27 H 0.096 0.904 28 H 0.239 0.761 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.195 0.805 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.371 -4.813 21.809 23.225 hybrid contribution 0.521 1.562 0.558 1.738 sum 6.892 -3.251 22.367 23.629 Atomic orbital electron populations 1.21866 0.89046 1.04931 1.05081 1.22660 1.01553 1.03065 0.91432 0.84294 1.19723 0.80886 0.84792 0.84358 1.90817 1.37181 1.25518 1.86458 1.45919 1.53232 1.32163 1.05261 1.21559 0.99054 0.96288 0.82318 1.22817 0.98860 0.99933 0.92692 1.23445 0.99378 1.00830 0.95077 1.21001 0.92229 0.89158 0.91561 1.42515 1.42566 1.05478 1.46482 1.19109 1.10174 0.96571 1.11949 0.89007 1.24688 0.98540 0.97271 0.98492 1.69697 1.35042 1.23225 1.29873 0.86559 0.80445 0.83371 0.78129 1.20979 1.21645 1.20470 1.23911 0.95459 1.00368 1.01009 1.19758 0.75943 0.77913 0.84525 1.93220 1.29274 1.96352 1.96662 1.93186 1.88572 1.80855 1.53738 1.93211 1.88268 1.37135 1.96655 0.89849 0.89450 0.90410 0.76091 0.91009 0.91412 0.89136 0.89881 0.91356 0.91087 0.80533 0.92929 0.91247 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.85 37.16 0.33 -0.56 16 2 C -0.16 -1.29 2.71 -91.77 -0.25 -1.54 16 3 H 0.14 0.71 8.14 -51.93 -0.42 0.28 16 4 C 0.52 5.68 6.92 -10.98 -0.08 5.60 16 5 O -0.52 -7.87 14.83 5.56 0.08 -7.78 16 6 N -0.71 -6.91 5.45 -60.30 -0.33 -7.23 16 7 C 0.13 1.46 5.52 -4.04 -0.02 1.44 16 8 C -0.12 -1.55 3.64 -89.67 -0.33 -1.88 16 9 C -0.15 -2.04 7.38 -25.92 -0.19 -2.23 16 10 C 0.17 3.02 4.55 -67.12 -0.31 2.71 16 11 N -0.73 -16.15 5.11 -52.64 -0.27 -16.42 16 12 C -0.25 -6.71 10.45 -15.06 -0.16 -6.87 16 13 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 14 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 15 N -0.93 -28.43 13.97 55.49 0.78 -27.65 16 16 Si 0.88 21.14 27.74 -169.99 -4.71 16.42 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.28 -6.14 6.52 56.52 0.37 -5.78 16 20 C -0.17 -2.41 7.45 -25.78 -0.19 -2.60 16 21 C 0.47 4.81 2.42 37.16 0.09 4.90 16 22 F -0.17 -2.09 16.40 2.25 0.04 -2.06 16 23 F -0.18 -1.67 16.80 2.25 0.04 -1.64 16 24 F -0.17 -2.05 15.88 2.25 0.04 -2.02 16 25 H 0.08 0.39 7.80 -51.93 -0.41 -0.01 16 26 H 0.09 0.40 7.56 -51.93 -0.39 0.01 16 27 H 0.08 0.53 7.80 -51.93 -0.41 0.13 16 28 H 0.40 3.03 7.89 -40.82 -0.32 2.71 16 29 H 0.07 0.85 7.85 -51.93 -0.41 0.44 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.29 8.11 -51.93 -0.42 0.87 16 35 H 0.36 7.81 5.76 -40.82 -0.24 7.58 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 38 H 0.07 0.95 7.91 -51.93 -0.41 0.54 16 LS Contribution 328.17 15.07 4.95 4.95 Total: -1.00 -32.51 328.17 -5.72 -38.23 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -5.13 Total: 6.14 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -1.20 Total: -0.95 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: 0.18 Total: -51.31 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.08 Total: -7.78 kcal Atomic # 9 Polarization: -5.82 SS G_CDS: 0.11 Total: -5.71 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.71 Total: 16.42 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.51 -5.72 -38.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100580231.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.592 kcal (2) G-P(sol) polarization free energy of solvation -32.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds